Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC003445A_C01 KCC003445A_c01
(481 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF43497.1|AF134579_1 arabinogalactan protein [Zea mays] 38 0.071
gb|AAK49819.1| calcium channel subunit alpha 1A [Bos taurus] 37 0.092
emb|CAA68172.1| calcium channel alpha1 subunit [Homo sapiens] 37 0.16
ref|NP_075461.1| calcium channel, alpha 1A subunit isoform 2; ca... 37 0.16
sp|O00555|CCAA_HUMAN Voltage-dependent P/Q-type calcium channel ... 37 0.16
>gb|AAF43497.1|AF134579_1 arabinogalactan protein [Zea mays]
Length = 274
Score = 37.7 bits (86), Expect = 0.071
Identities = 33/81 (40%), Positives = 39/81 (47%), Gaps = 7/81 (8%)
Frame = +2
Query: 260 RGGSR*SATQATSTPAG-----CRPR--STRLRQHD*SRTATATPSMRRSAWSSPSPRTL 418
R S +AT +TST AG C P ST R S TA P R S PSP +
Sbjct: 7 RASSAATATPSTSTAAGTPTSACSPTATSTSTRTSSASTAPTACPGTSRG--SRPSPCSS 64
Query: 419 AITHVTASRAPGRRLKRTTTT 481
T T+ APGRR + TTT+
Sbjct: 65 TATSSTS--APGRRPRGTTTS 83
>gb|AAK49819.1| calcium channel subunit alpha 1A [Bos taurus]
Length = 233
Score = 37.4 bits (85), Expect = 0.092
Identities = 34/90 (37%), Positives = 42/90 (45%), Gaps = 1/90 (1%)
Frame = +3
Query: 213 RSAARSFSSFARQGFVEA-ARDEAQHKQRRHRRGAGPAQLDSVNTTDPERLRRLQV*DGA 389
RS R S AR G E+ D ++RRHR G PA + D ER R + +
Sbjct: 139 RSRHREGSRPARGGEGESEGPDGGGERRRRHRHGPPPAYDADMRREDKERRHRRRKENQG 198
Query: 390 HGVPLPRGPSLSPT*QRQGRLGEG*RGPPP 479
GVP+ GP+LS T Q LG R PP
Sbjct: 199 SGVPV-SGPNLSTTRPIQQDLG---RQDPP 224
>emb|CAA68172.1| calcium channel alpha1 subunit [Homo sapiens]
Length = 2262
Score = 36.6 bits (83), Expect = 0.16
Identities = 31/89 (34%), Positives = 39/89 (42%)
Frame = +3
Query: 213 RSAARSFSSFARQGFVEAARDEAQHKQRRHRRGAGPAQLDSVNTTDPERLRRLQV*DGAH 392
R+ R S AR G E + ++RRHR GA D ER R + +
Sbjct: 977 RARHREGSRPARGGEGEGEGPDGGERRRRHRHGAPATYEGDARREDKERRHRRRKENQGS 1036
Query: 393 GVPLPRGPSLSPT*QRQGRLGEG*RGPPP 479
GVP+ GP+LS T Q LG R PP
Sbjct: 1037 GVPV-SGPNLSTTRPIQQDLG---RQDPP 1061
>ref|NP_075461.1| calcium channel, alpha 1A subunit isoform 2; calcium channel, L type,
alpha-1 polypeptide, isoform 4; brain calcium channel 1
[Homo sapiens] gi|2281752|gb|AAB64179.1|
alpha1A-voltage-dependent calcium channel [Homo sapiens]
Length = 2505
Score = 36.6 bits (83), Expect = 0.16
Identities = 31/89 (34%), Positives = 39/89 (42%)
Frame = +3
Query: 213 RSAARSFSSFARQGFVEAARDEAQHKQRRHRRGAGPAQLDSVNTTDPERLRRLQV*DGAH 392
R+ R S AR G E + ++RRHR GA D ER R + +
Sbjct: 977 RARHREGSRPARGGEGEGEGPDGGERRRRHRHGAPATYEGDARREDKERRHRRRKENQGS 1036
Query: 393 GVPLPRGPSLSPT*QRQGRLGEG*RGPPP 479
GVP+ GP+LS T Q LG R PP
Sbjct: 1037 GVPV-SGPNLSTTRPIQQDLG---RQDPP 1061
>sp|O00555|CCAA_HUMAN Voltage-dependent P/Q-type calcium channel alpha-1A subunit (Calcium
channel, L type, alpha-1 polypeptide isoform 4) (Brain
calcium channel I) (BI)
Length = 2505
Score = 36.6 bits (83), Expect = 0.16
Identities = 31/89 (34%), Positives = 39/89 (42%)
Frame = +3
Query: 213 RSAARSFSSFARQGFVEAARDEAQHKQRRHRRGAGPAQLDSVNTTDPERLRRLQV*DGAH 392
R+ R S AR G E + ++RRHR GA D ER R + +
Sbjct: 977 RARHREGSRPARGGEGEGEGPDGGERRRRHRHGAPATYEGDARREDKERRHRRRKENQGS 1036
Query: 393 GVPLPRGPSLSPT*QRQGRLGEG*RGPPP 479
GVP+ GP+LS T Q LG R PP
Sbjct: 1037 GVPV-SGPNLSTTRPIQQDLG---RQDPP 1061
