KCC003442A_c01
[Fasta Sequence]
[Nr Search]
[EST assemble image]
Fasta Sequence
>KCC003442A_C01 KCC003442A_c01
CTCTAATTAAAATCGATATAGACTCCCAAACAATGAGAAACGCGCCCACTGTGAAAAGAA
ACTCAGCGTAAGCCATATTGCCCGCAGATTTCCTTTTCTTCTTGCTGTATTTACAGTTTC
TCGTGCTATCTAATATATCTGGTCCATTAAGGTCGCTACGATGGCTCCGGCCAGGCTTTG
TCGGGCGATTCTGGCGCTGGCCCTGGCGCTGGCAGCTTGCTCCACACGCATGGCAAATGC
CCAACCTGCGTGCCCCGCGGTCGCCGGCTACACATTCTACCGCCTCCAAGACGCGGCTGG
CTCCGTAACCCTAGCCACGCTCGACGCCGCCGCCGCCACCTCCGTCAGCGCCATCGCTGA
CGTGTGCGCCAGCACCCCCCGCTGCA
Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC003442A_C01 KCC003442A_c01
(386 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAE04676.1| OSJNBb0018A10.5 [Oryza sativa (japonica cultivar... 45 2e-04
gb|AAM08514.1|AC068654_16 Hypothetical protein [Oryza sativa] gi... 43 0.001
gb|AAP52390.1| unknown protein [Oryza sativa (japonica cultivar-... 42 0.002
emb|CAE04214.1| OSJNBa0011E07.23 [Oryza sativa (japonica cultiva... 42 0.002
emb|CAA41440.1| preproacrosin [Sus sp.] 42 0.003
>emb|CAE04676.1| OSJNBb0018A10.5 [Oryza sativa (japonica cultivar-group)]
Length = 909
Score = 45.1 bits (105), Expect = 2e-04
Identities = 26/66 (39%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Frame = +3
Query: 198 WPWRWQLAPH---AWQMPNLRAPRSPATHSTASKTRLAP*P*PRSTPPPPPPSAPSLTCA 368
W R+ + P A + P+ AP SP S + P P P PPPPPP APS
Sbjct: 422 WRKRYIILPRRQAASRAPSPPAPPSPPAPSPPAPPPPPPVPSPSGPPPPPPPPAPSPPAP 481
Query: 369 PAPPAA 386
P PP A
Sbjct: 482 PPPPPA 487
>gb|AAM08514.1|AC068654_16 Hypothetical protein [Oryza sativa] gi|31429824|gb|AAP51819.1|
hypothetical protein [Oryza sativa (japonica
cultivar-group)]
Length = 773
Score = 43.1 bits (100), Expect = 0.001
Identities = 25/64 (39%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Frame = +3
Query: 198 WPWRWQLAPH---AWQMPNLRAPRSPATHSTASKTRLAP*P*PRSTPPPPPPSAPSLTCA 368
W R+ + P A + P+ AP SP S + P P P + PPPPPP APS
Sbjct: 397 WRKRYIILPGRQAASRAPSPPAPPSPPAPSPPAPPPPPPAPSPPAPPPPPPPPAPSPPAP 456
Query: 369 PAPP 380
P PP
Sbjct: 457 PPPP 460
Score = 35.0 bits (79), Expect = 0.26
Identities = 20/45 (44%), Positives = 23/45 (50%)
Frame = +3
Query: 249 RAPRSPATHSTASKTRLAP*P*PRSTPPPPPPSAPSLTCAPAPPA 383
RAP PA S + + AP P P P PP P P AP+PPA
Sbjct: 412 RAPSPPAPPSPPAPSPPAPPP-PPPAPSPPAPPPPPPPPAPSPPA 455
Score = 33.5 bits (75), Expect = 0.74
Identities = 20/57 (35%), Positives = 23/57 (40%), Gaps = 3/57 (5%)
Frame = +3
Query: 219 APHAWQMPNLRAPRSPATHSTASKTRLAP*P*PRSTPPPP---PPSAPSLTCAPAPP 380
+P A P +P +P A P P P P PP PP P C PAPP
Sbjct: 415 SPPAPPSPPAPSPPAPPPPPPAPSPPAPPPPPPPPAPSPPAPPPPPPPPPPCPPAPP 471
>gb|AAP52390.1| unknown protein [Oryza sativa (japonica cultivar-group)]
Length = 827
Score = 42.4 bits (98), Expect = 0.002
Identities = 23/62 (37%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Frame = +3
Query: 204 WRWQLAPHAWQMPNLRAPRSPATHSTASKTRLAP*P*PRSTPPPPPPSAPSLTCAP-APP 380
W+ ++ +W AP H+ A AP P P P P PP AP L+ AP APP
Sbjct: 495 WKPRMRTSSWTTLEETAPAPSPPHALAPSPPQAPAPTPSQAPTPTPPQAPRLSRAPQAPP 554
Query: 381 AA 386
A
Sbjct: 555 PA 556
>emb|CAE04214.1| OSJNBa0011E07.23 [Oryza sativa (japonica cultivar-group)]
Length = 547
Score = 42.4 bits (98), Expect = 0.002
Identities = 26/65 (40%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Frame = +3
Query: 198 WPWRWQLAPH---AWQMPNLRAPRSPATHSTASKTRLAP*P*PRSTPPPPPPSAPSLTCA 368
W R+ + P A + P+L AP SP S + P P P PPPPP APS
Sbjct: 58 WRKRYIILPRRQAASRAPSLPAPLSPPAPSPPAPP--PPPPAPSPPVPPPPPPAPSSPAP 115
Query: 369 PAPPA 383
P+PPA
Sbjct: 116 PSPPA 120
Score = 35.8 bits (81), Expect = 0.15
Identities = 21/56 (37%), Positives = 24/56 (42%)
Frame = +3
Query: 219 APHAWQMPNLRAPRSPATHSTASKTRLAP*P*PRSTPPPPPPSAPSLTCAPAPPAA 386
AP + P+ AP SPA P PR PPP PP+ P APP A
Sbjct: 109 APSSPAPPSPPAPSSPAPPPPPPAPSPPDPPPPRPAPPPCPPAPPMTRSRQAPPPA 164
>emb|CAA41440.1| preproacrosin [Sus sp.]
Length = 415
Score = 41.6 bits (96), Expect = 0.003
Identities = 32/92 (34%), Positives = 36/92 (38%)
Frame = +3
Query: 111 LQFLVLSNISGPLRSLRWLRPGFVGRFWRWPWRWQLAPHAWQMPNLRAPRSPATHSTASK 290
LQ + L P +RP V R PW +Q P Q P R PR PA
Sbjct: 292 LQMVQLGTPPRPSTPAPPVRPPSVQTPVRPPWYFQRPPGPSQQPGSR-PRPPAPPPAP-- 348
Query: 291 TRLAP*P*PRSTPPPPPPSAPSLTCAPAPPAA 386
P P P PPPPPP P + PP A
Sbjct: 349 ----PPPPPPPPPPPPPPPPPPQQVSAKPPQA 376
EST assemble image
|
|
|
|
clone |
accession |
position |
1 |
MXL019d10_r |
BP094197 |
1 |
370 |
2 |
MXL048e03_r |
BP095862 |
1 |
386 |
3 |
MXL018h03_r |
BP094154 |
27 |
260 |
|
Chlamydomonas reinhardtii
Kazusa DNA Research Institute