KCC003442A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC003442A_C01 KCC003442A_c01
CTCTAATTAAAATCGATATAGACTCCCAAACAATGAGAAACGCGCCCACTGTGAAAAGAA
ACTCAGCGTAAGCCATATTGCCCGCAGATTTCCTTTTCTTCTTGCTGTATTTACAGTTTC
TCGTGCTATCTAATATATCTGGTCCATTAAGGTCGCTACGATGGCTCCGGCCAGGCTTTG
TCGGGCGATTCTGGCGCTGGCCCTGGCGCTGGCAGCTTGCTCCACACGCATGGCAAATGC
CCAACCTGCGTGCCCCGCGGTCGCCGGCTACACATTCTACCGCCTCCAAGACGCGGCTGG
CTCCGTAACCCTAGCCACGCTCGACGCCGCCGCCGCCACCTCCGTCAGCGCCATCGCTGA
CGTGTGCGCCAGCACCCCCCGCTGCA


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC003442A_C01 KCC003442A_c01
         (386 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

emb|CAE04676.1| OSJNBb0018A10.5 [Oryza sativa (japonica cultivar...    45  2e-04
gb|AAM08514.1|AC068654_16 Hypothetical protein [Oryza sativa] gi...    43  0.001
gb|AAP52390.1| unknown protein [Oryza sativa (japonica cultivar-...    42  0.002
emb|CAE04214.1| OSJNBa0011E07.23 [Oryza sativa (japonica cultiva...    42  0.002
emb|CAA41440.1| preproacrosin [Sus sp.]                                42  0.003

>emb|CAE04676.1| OSJNBb0018A10.5 [Oryza sativa (japonica cultivar-group)]
          Length = 909

 Score = 45.1 bits (105), Expect = 2e-04
 Identities = 26/66 (39%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
 Frame = +3

Query: 198 WPWRWQLAPH---AWQMPNLRAPRSPATHSTASKTRLAP*P*PRSTPPPPPPSAPSLTCA 368
           W  R+ + P    A + P+  AP SP   S  +     P P P   PPPPPP APS    
Sbjct: 422 WRKRYIILPRRQAASRAPSPPAPPSPPAPSPPAPPPPPPVPSPSGPPPPPPPPAPSPPAP 481

Query: 369 PAPPAA 386
           P PP A
Sbjct: 482 PPPPPA 487

>gb|AAM08514.1|AC068654_16 Hypothetical protein [Oryza sativa] gi|31429824|gb|AAP51819.1|
           hypothetical protein [Oryza sativa (japonica
           cultivar-group)]
          Length = 773

 Score = 43.1 bits (100), Expect = 0.001
 Identities = 25/64 (39%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
 Frame = +3

Query: 198 WPWRWQLAPH---AWQMPNLRAPRSPATHSTASKTRLAP*P*PRSTPPPPPPSAPSLTCA 368
           W  R+ + P    A + P+  AP SP   S  +     P P P + PPPPPP APS    
Sbjct: 397 WRKRYIILPGRQAASRAPSPPAPPSPPAPSPPAPPPPPPAPSPPAPPPPPPPPAPSPPAP 456

Query: 369 PAPP 380
           P PP
Sbjct: 457 PPPP 460

 Score = 35.0 bits (79), Expect = 0.26
 Identities = 20/45 (44%), Positives = 23/45 (50%)
 Frame = +3

Query: 249 RAPRSPATHSTASKTRLAP*P*PRSTPPPPPPSAPSLTCAPAPPA 383
           RAP  PA  S  + +  AP P P   P PP P  P    AP+PPA
Sbjct: 412 RAPSPPAPPSPPAPSPPAPPP-PPPAPSPPAPPPPPPPPAPSPPA 455

 Score = 33.5 bits (75), Expect = 0.74
 Identities = 20/57 (35%), Positives = 23/57 (40%), Gaps = 3/57 (5%)
 Frame = +3

Query: 219 APHAWQMPNLRAPRSPATHSTASKTRLAP*P*PRSTPPPP---PPSAPSLTCAPAPP 380
           +P A   P   +P +P     A      P P P   P PP   PP  P   C PAPP
Sbjct: 415 SPPAPPSPPAPSPPAPPPPPPAPSPPAPPPPPPPPAPSPPAPPPPPPPPPPCPPAPP 471

>gb|AAP52390.1| unknown protein [Oryza sativa (japonica cultivar-group)]
          Length = 827

 Score = 42.4 bits (98), Expect = 0.002
 Identities = 23/62 (37%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
 Frame = +3

Query: 204 WRWQLAPHAWQMPNLRAPRSPATHSTASKTRLAP*P*PRSTPPPPPPSAPSLTCAP-APP 380
           W+ ++   +W      AP     H+ A     AP P P   P P PP AP L+ AP APP
Sbjct: 495 WKPRMRTSSWTTLEETAPAPSPPHALAPSPPQAPAPTPSQAPTPTPPQAPRLSRAPQAPP 554

Query: 381 AA 386
            A
Sbjct: 555 PA 556

>emb|CAE04214.1| OSJNBa0011E07.23 [Oryza sativa (japonica cultivar-group)]
          Length = 547

 Score = 42.4 bits (98), Expect = 0.002
 Identities = 26/65 (40%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
 Frame = +3

Query: 198 WPWRWQLAPH---AWQMPNLRAPRSPATHSTASKTRLAP*P*PRSTPPPPPPSAPSLTCA 368
           W  R+ + P    A + P+L AP SP   S  +     P P P    PPPPP APS    
Sbjct: 58  WRKRYIILPRRQAASRAPSLPAPLSPPAPSPPAPP--PPPPAPSPPVPPPPPPAPSSPAP 115

Query: 369 PAPPA 383
           P+PPA
Sbjct: 116 PSPPA 120

 Score = 35.8 bits (81), Expect = 0.15
 Identities = 21/56 (37%), Positives = 24/56 (42%)
 Frame = +3

Query: 219 APHAWQMPNLRAPRSPATHSTASKTRLAP*P*PRSTPPPPPPSAPSLTCAPAPPAA 386
           AP +   P+  AP SPA             P PR  PPP PP+ P      APP A
Sbjct: 109 APSSPAPPSPPAPSSPAPPPPPPAPSPPDPPPPRPAPPPCPPAPPMTRSRQAPPPA 164

>emb|CAA41440.1| preproacrosin [Sus sp.]
          Length = 415

 Score = 41.6 bits (96), Expect = 0.003
 Identities = 32/92 (34%), Positives = 36/92 (38%)
 Frame = +3

Query: 111 LQFLVLSNISGPLRSLRWLRPGFVGRFWRWPWRWQLAPHAWQMPNLRAPRSPATHSTASK 290
           LQ + L     P      +RP  V    R PW +Q  P   Q P  R PR PA       
Sbjct: 292 LQMVQLGTPPRPSTPAPPVRPPSVQTPVRPPWYFQRPPGPSQQPGSR-PRPPAPPPAP-- 348

Query: 291 TRLAP*P*PRSTPPPPPPSAPSLTCAPAPPAA 386
               P P P   PPPPPP  P    +  PP A
Sbjct: 349 ----PPPPPPPPPPPPPPPPPPQQVSAKPPQA 376



EST assemble image


clone accession position
1 MXL019d10_r BP094197 1 370
2 MXL048e03_r BP095862 1 386
3 MXL018h03_r BP094154 27 260




Chlamydomonas reinhardtii
Kazusa DNA Research Institute