KCC003424A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC003424A_C01 KCC003424A_c01
cttccgcatccgcccgcaccgcctggctaggcttttgcgCGCCCTTGAAGACGGGTACCG
GGCTGACAACCCCTACCACAGCGCCACGCACGCGGCCGACGTGCTGCAGACGCTGCACGT
GATCATCCACGGCGCGCAGCTGCACGTGCACTACCTGGACAAGCTGGGACTGCTGGCTGC
ATATGTTGCGGCGGTTGTTCACGACCACGGCCACCCCGGCCTCACCAACGACTTCCTCAT
TGCCACACACGACCCGCTGGCGGTCCGCTACAACGACCGCTCGCCGCTGGAGAACCACCA
CGCCGCCTCCGCCTTTGAGCAGCTGCTGCAGCCGGGGCACGACATCACCACAGGCATGGA
GCCTTCGGATCGGGCGGCCTTCCGCAAACAGGTGATCGACATGGTCCTGGCCACGGACAT
GAAGCAGCACTTCGCCATCCTCTCCCATTTCAACACTGTGCACCGACTCCAAGCCTACAA
GCCCAACAGCGGCGGCGAAGGCGG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC003424A_C01 KCC003424A_c01
         (504 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAC50458.1| 3',5'-cyclic AMP phosphodiesterase HPDE4A6             131  4e-30
gb|AAC35015.1| putative novel cAMP specific phosphodiesterase 4A...   131  4e-30
ref|NP_006193.1| phosphodiesterase 4A, cAMP-specific (phosphodie...   131  4e-30
gb|AAB33798.1| type-IVA cyclic AMP specific phosphodiesterase HP...   131  4e-30
gb|AAD34217.2|AF073745_1 cyclic AMP-specific phosphodiesterase H...   131  4e-30

>gb|AAC50458.1| 3',5'-cyclic AMP phosphodiesterase HPDE4A6
          Length = 686

 Score =  131 bits (330), Expect = 4e-30
 Identities = 73/165 (44%), Positives = 97/165 (58%)
 Frame = +2

Query: 2   FRIRPHRLARLLRALEDGYRADNPYHSATHAADVLQTLHVIIHGAQLHVHYLDKLGLLAA 181
           FRI    +   +  LED Y AD  YH++ HAADVLQ+ HV++    L   + D L +LAA
Sbjct: 208 FRIPVDTMVTYMLTLEDHYHADVAYHNSLHAADVLQSTHVLLATPALDAVFTD-LEILAA 266

Query: 182 YVAAVVHDHGHPGLTNDFLIATHDPLAVRYNDRSPLENHHAASAFEQLLQPGHDITTGME 361
             AA +HD  HPG++N FLI T+  LA+ YND S LENHH A  F+ L +   DI   + 
Sbjct: 267 LFAAAIHDVDHPGVSNQFLINTNSELALMYNDESVLENHHLAVGFKLLQEDNCDIFQNLS 326

Query: 362 PSDRAAFRKQVIDMVLATDMKQHFAILSHFNTVHRLQAYKPNSGG 496
              R + RK VIDMVLATDM +H  +L+   T+  ++  K  S G
Sbjct: 327 KRQRQSLRKMVIDMVLATDMSKHMTLLADLKTM--VETKKVTSSG 369

>gb|AAC35015.1| putative novel cAMP specific phosphodiesterase 4A variant [Homo
           sapiens]
          Length = 860

 Score =  131 bits (330), Expect = 4e-30
 Identities = 73/165 (44%), Positives = 97/165 (58%)
 Frame = +2

Query: 2   FRIRPHRLARLLRALEDGYRADNPYHSATHAADVLQTLHVIIHGAQLHVHYLDKLGLLAA 181
           FRI    +   +  LED Y AD  YH++ HAADVLQ+ HV++    L   + D L +LAA
Sbjct: 382 FRIPVDTMVTYMLTLEDHYHADVAYHNSLHAADVLQSTHVLLATPALDAVFTD-LEILAA 440

Query: 182 YVAAVVHDHGHPGLTNDFLIATHDPLAVRYNDRSPLENHHAASAFEQLLQPGHDITTGME 361
             AA +HD  HPG++N FLI T+  LA+ YND S LENHH A  F+ L +   DI   + 
Sbjct: 441 LFAAAIHDVDHPGVSNQFLINTNSELALMYNDESVLENHHLAVGFKLLQEDNCDIFQNLS 500

Query: 362 PSDRAAFRKQVIDMVLATDMKQHFAILSHFNTVHRLQAYKPNSGG 496
              R + RK VIDMVLATDM +H  +L+   T+  ++  K  S G
Sbjct: 501 KRQRQSLRKMVIDMVLATDMSKHMTLLADLKTM--VETKKVTSSG 543

>ref|NP_006193.1| phosphodiesterase 4A, cAMP-specific (phosphodiesterase E2 dunce
           homolog, Drosophila); Phosphodiesterase-4A,
           cAMP-specific (dunce (Drosophila)-homolog;
           phosphodiesterase 4A, cAMP-specific (dunce
           (Drosophila)-homolog phosphodiesterase E2) [Homo
           sapiens] gi|3293241|gb|AAC25679.1| cyclic AMP-specific
           phosphodiesterase HSPDE4A1A [Homo sapiens]
           gi|3560573|gb|AAC35013.1| cAMP specific
           phosphodiesterase 4A variant RD1 [Homo sapiens]
           gi|3745980|gb|AAC63832.1| cyclic AMP specific
           phosphodiesterase RD1 [Homo sapiens]
           gi|18043809|gb|AAH19864.1| Phosphodiesterase 4A,
           cAMP-specific (phosphodiesterase E2 dunce homolog,
           Drosophila) [Homo sapiens] gi|23398530|gb|AAH38234.1|
           Phosphodiesterase 4A, cAMP-specific (phosphodiesterase
           E2 dunce homolog, Drosophila) [Homo sapiens]
          Length = 647

 Score =  131 bits (330), Expect = 4e-30
 Identities = 73/165 (44%), Positives = 97/165 (58%)
 Frame = +2

Query: 2   FRIRPHRLARLLRALEDGYRADNPYHSATHAADVLQTLHVIIHGAQLHVHYLDKLGLLAA 181
           FRI    +   +  LED Y AD  YH++ HAADVLQ+ HV++    L   + D L +LAA
Sbjct: 169 FRIPVDTMVTYMLTLEDHYHADVAYHNSLHAADVLQSTHVLLATPALDAVFTD-LEILAA 227

Query: 182 YVAAVVHDHGHPGLTNDFLIATHDPLAVRYNDRSPLENHHAASAFEQLLQPGHDITTGME 361
             AA +HD  HPG++N FLI T+  LA+ YND S LENHH A  F+ L +   DI   + 
Sbjct: 228 LFAAAIHDVDHPGVSNQFLINTNSELALMYNDESVLENHHLAVGFKLLQEDNCDIFQNLS 287

Query: 362 PSDRAAFRKQVIDMVLATDMKQHFAILSHFNTVHRLQAYKPNSGG 496
              R + RK VIDMVLATDM +H  +L+   T+  ++  K  S G
Sbjct: 288 KRQRQSLRKMVIDMVLATDMSKHMTLLADLKTM--VETKKVTSSG 330

>gb|AAB33798.1| type-IVA cyclic AMP specific phosphodiesterase HPDE4A [Homo
           sapiens]
          Length = 667

 Score =  131 bits (330), Expect = 4e-30
 Identities = 73/165 (44%), Positives = 97/165 (58%)
 Frame = +2

Query: 2   FRIRPHRLARLLRALEDGYRADNPYHSATHAADVLQTLHVIIHGAQLHVHYLDKLGLLAA 181
           FRI    +   +  LED Y AD  YH++ HAADVLQ+ HV++    L   + D L +LAA
Sbjct: 189 FRIPVDTMVTYMLTLEDHYHADVAYHNSLHAADVLQSTHVLLATPALDAVFTD-LEILAA 247

Query: 182 YVAAVVHDHGHPGLTNDFLIATHDPLAVRYNDRSPLENHHAASAFEQLLQPGHDITTGME 361
             AA +HD  HPG++N FLI T+  LA+ YND S LENHH A  F+ L +   DI   + 
Sbjct: 248 LFAAAIHDVDHPGVSNQFLINTNSELALMYNDESVLENHHLAVGFKLLQEDNCDIFQNLS 307

Query: 362 PSDRAAFRKQVIDMVLATDMKQHFAILSHFNTVHRLQAYKPNSGG 496
              R + RK VIDMVLATDM +H  +L+   T+  ++  K  S G
Sbjct: 308 KRQRQSLRKMVIDMVLATDMSKHMTLLADLKTM--VETKKVTSSG 350

>gb|AAD34217.2|AF073745_1 cyclic AMP-specific phosphodiesterase HSPDE4A10 [Homo sapiens]
          Length = 825

 Score =  131 bits (330), Expect = 4e-30
 Identities = 73/165 (44%), Positives = 97/165 (58%)
 Frame = +2

Query: 2   FRIRPHRLARLLRALEDGYRADNPYHSATHAADVLQTLHVIIHGAQLHVHYLDKLGLLAA 181
           FRI    +   +  LED Y AD  YH++ HAADVLQ+ HV++    L   + D L +LAA
Sbjct: 347 FRIPVDTMVTYMLTLEDHYHADVAYHNSLHAADVLQSTHVLLATPALDAVFTD-LEILAA 405

Query: 182 YVAAVVHDHGHPGLTNDFLIATHDPLAVRYNDRSPLENHHAASAFEQLLQPGHDITTGME 361
             AA +HD  HPG++N FLI T+  LA+ YND S LENHH A  F+ L +   DI   + 
Sbjct: 406 LFAAAIHDVDHPGVSNQFLINTNSELALMYNDESVLENHHLAVGFKLLQEDNCDIFQNLS 465

Query: 362 PSDRAAFRKQVIDMVLATDMKQHFAILSHFNTVHRLQAYKPNSGG 496
              R + RK VIDMVLATDM +H  +L+   T+  ++  K  S G
Sbjct: 466 KRQRQSLRKMVIDMVLATDMSKHMTLLADLKTM--VETKKVTSSG 508



EST assemble image


clone accession position
1 MXL011a02_r BP093614 1 302
2 MXL039a09_r BP095262 40 504




Chlamydomonas reinhardtii
Kazusa DNA Research Institute