KCC003422A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC003422A_C01 KCC003422A_c01
ggctggagctggtatcgtttgtcgaggagatggggctggcgatgctcctggtggcagcgt
cgccgggcgcatgggtgtcgTATGACCACACGGTGCTGCGGCGCCGCGCGGGCTTCAGCG
GCTTGCGCTACCTGTCGGACATTCAAGCTTTGTCACGTATAAACAAGTCCGAGGGTCCGC
AGGTCGCGTTCACGCTGCCGCGCTTCTGCTACAACGTGACCCGGGATGCGTCGCAGCAGT
GCAGCACGGATTTGGTGTACGCAGTGGACGTGTCGGCGCAGCTGGGGCCCTCGGAGTCGT
CGTTCTTCGCGAGCGGCGTGGCGCTGGGGCAGTACGTTATGACATTAAGGGAGAGCGCGC
TGGTGACAGACCACTTGGTCAACCCAAAGTGCGTGCAATCGCTGTCGGAGGGGGCGTGCA
TATCGCAGCTGCTCAAGCTACTGGACAT


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC003422A_C01 KCC003422A_c01
         (448 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

dbj|BAC87637.1| unnamed protein product [Homo sapiens]                 52  2e-06
ref|NP_045241.1| 24 [Equine herpesvirus 4] gi|11278231|pir||T425...    52  2e-06
ref|XP_302837.1| hypothetical protein XP_302837 [Homo sapiens]         52  2e-06
ref|NP_628191.1| putative bifunctional protein (histidine kinase...    51  3e-06
gb|AAA59163.1| mucin                                                   50  7e-06

>dbj|BAC87637.1| unnamed protein product [Homo sapiens]
          Length = 286

 Score = 52.0 bits (123), Expect = 2e-06
 Identities = 51/143 (35%), Positives = 60/143 (41%), Gaps = 6/143 (4%)
 Frame = -2

Query: 417 TPPPTAIARTLG*PSGLSPARSPLMS*RTAPAPRRSRRTTTPRAPAAPTR------PLRT 256
           TPP  +  RT   P   SP R+P  +  T   PR S R T PR  A+PTR      P RT
Sbjct: 120 TPPRASPTRT---PPRASPRRTPSTASPTRTPPRASPRRTPPR--ASPTRTPPRASPKRT 174

Query: 255 PNPCCTAATHPGSRCSRSAAA*TRPADPRTCLYVTKLECPTGSASR*SPRGAAAPCGHTT 76
           P       T P +  +R        A PR      K   PT S +R  PR  A+P     
Sbjct: 175 PPRASPRRTPPRASPTR--------APPRAS---PKRTPPTASPTRTPPR--ASPTRTPP 221

Query: 75  PMRPATLPPGASPAPSPRQTIPA 7
              PA  PP ASP  +P    PA
Sbjct: 222 TESPARTPPRASPTRTPPTESPA 244

 Score = 43.9 bits (102), Expect = 5e-04
 Identities = 49/150 (32%), Positives = 60/150 (39%), Gaps = 11/150 (7%)
 Frame = -2

Query: 417 TPPPTAIARTLG*PSGLSPARSPLMS*RTAPAPRRSRRTTTPRAPAAPTR------PLRT 256
           TPP  +  RT   P   SP R+P  +  T P  R       P AP  PTR      P RT
Sbjct: 48  TPPRASPRRT---PPRASPRRTPPRASLTRPPTRAPPTRMPPTAP--PTRTPPTASPART 102

Query: 255 PNPCCTAATHPGSRCSRSA--AA*TRPADPRTCLYVTKLECPTGSASR*SPRGAAAPCGH 82
           P     A T P +  +R+   A+ TR     +         PT +  R SPR        
Sbjct: 103 PPTESPARTPPTASPARTPPRASPTRTPPRASPRRTPSTASPTRTPPRASPRRTPPRASP 162

Query: 81  T-TPMR--PATLPPGASPAPSPRQTIPAPA 1
           T TP R  P   PP ASP  +P +  P  A
Sbjct: 163 TRTPPRASPKRTPPRASPRRTPPRASPTRA 192

 Score = 42.4 bits (98), Expect = 0.001
 Identities = 50/167 (29%), Positives = 61/167 (35%), Gaps = 31/167 (18%)
 Frame = -2

Query: 417 TPPPTAIARTL------G*PSGLSPARSPLMS*RTAPAPRRSRRTTTPRAP--------- 283
           TP  T++ R L        P+  SP R P  +  T   PR S R T PRA          
Sbjct: 12  TPHTTSLTRILYTTSLTRPPTRASPTRMPPRASPTRTPPRASPRRTPPRASPRRTPPRAS 71

Query: 282 -------AAPTR------PLRTPNPCCTAATHPGSRCSRSAAA*TRPADPRTCLYVTKLE 142
                  A PTR      P RTP     A T P    +R+    +    P          
Sbjct: 72  LTRPPTRAPPTRMPPTAPPTRTPPTASPARTPPTESPARTPPTASPARTPPRA------- 124

Query: 141 CPTGSASR*SPRGAAAPCGHT-TPMR--PATLPPGASPAPSPRQTIP 10
            PT +  R SPR   +    T TP R  P   PP ASP  +P +  P
Sbjct: 125 SPTRTPPRASPRRTPSTASPTRTPPRASPRRTPPRASPTRTPPRASP 171

 Score = 36.2 bits (82), Expect = 0.10
 Identities = 40/131 (30%), Positives = 52/131 (39%), Gaps = 14/131 (10%)
 Frame = -2

Query: 417 TPPPTAIARTLG*PSGLSPARSPLMS*RTAPAPRRSRRTTTPRAP-------AAPTR--- 268
           TPP  +  RT   P   SP R+P  +  T   PR S + T P A        A+PTR   
Sbjct: 165 TPPRASPKRT---PPRASPRRTPPRASPTRAPPRASPKRTPPTASPTRTPPRASPTRTPP 221

Query: 267 ---PLRTPNPCCTAATHPGSRCSRSAA-A*TRPADPRTCLYVTKLECPTGSASR*SPRGA 100
              P RTP       T P    +R+ + A TR   PR          PT +  R SP+  
Sbjct: 222 TESPARTPPRASPTRTPPTESPARTPSRASTRRTPPRA--------SPTRTPPRASPKRT 273

Query: 99  AAPCGHTTPMR 67
                 T+ +R
Sbjct: 274 PPTASPTSCIR 284

>ref|NP_045241.1| 24 [Equine herpesvirus 4] gi|11278231|pir||T42567 tegument protein 24
            - equine herpesvirus 4 (strain NS80567)
            gi|2605967|gb|AAC59539.1| 24 [Equine herpesvirus 4]
          Length = 3534

 Score = 52.0 bits (123), Expect = 2e-06
 Identities = 47/150 (31%), Positives = 63/150 (41%), Gaps = 12/150 (8%)
 Frame = -2

Query: 414  PPP-------TAIARTLG*PSGLSPARSPLMS*-RTAPAPRRSRRTTTPRAPAA---PTR 268
            PPP       TA ++    P+   PA +P  S    APAP +      P  PAA   P++
Sbjct: 2707 PPPDPNEALLTAPSKPAAAPAPSKPAAAPAPSKPAAAPAPSKPAAAPAPSKPAAAPAPSK 2766

Query: 267  PLRTPNPCCTAATHPGSRCSRSAAA*TRPADPRTCLYVTKLECPTGSASR*SP-RGAAAP 91
            P   P P   AA  P      +A A ++PA             P+  A+  +P + AAAP
Sbjct: 2767 PAAAPAPSKPAAA-PAPSKPAAAPAPSKPAAAPAPSKPAAAPAPSKPAAAPAPSKPAAAP 2825

Query: 90   CGHTTPMRPATLPPGASPAPSPRQTIPAPA 1
                    PA   P A+PAPS     PAP+
Sbjct: 2826 APSKPAAAPAPSKPAAAPAPSKPAAAPAPS 2855

 Score = 49.7 bits (117), Expect = 9e-06
 Identities = 42/131 (32%), Positives = 56/131 (42%), Gaps = 5/131 (3%)
 Frame = -2

Query: 378  PSGLSPARSPLMS*-RTAPAPRRSRRTTTPRAPAA---PTRPLRTPNPCCTAATHPGSRC 211
            P+   PA +P  S    APAP +      P  PAA   P++P   P P   AA  P    
Sbjct: 2780 PAPSKPAAAPAPSKPAAAPAPSKPAAAPAPSKPAAAPAPSKPAAAPAPSKPAAA-PAPSK 2838

Query: 210  SRSAAA*TRPADPRTCLYVTKLECPTGSASR*SP-RGAAAPCGHTTPMRPATLPPGASPA 34
              +A A ++PA             P+  A+  +P + AAAP        PA   P A+PA
Sbjct: 2839 PAAAPAPSKPAAAPAPSKPAAAPAPSKPAAAPAPSKPAAAPAPSKPAAAPAPSKPAAAPA 2898

Query: 33   PSPRQTIPAPA 1
            PS     PAP+
Sbjct: 2899 PSKPAAAPAPS 2909

 Score = 49.7 bits (117), Expect = 9e-06
 Identities = 42/131 (32%), Positives = 56/131 (42%), Gaps = 5/131 (3%)
 Frame = -2

Query: 378  PSGLSPARSPLMS*-RTAPAPRRSRRTTTPRAPAA---PTRPLRTPNPCCTAATHPGSRC 211
            P+   PA +P  S    APAP +      P  PAA   P++P   P P   AA  P    
Sbjct: 2762 PAPSKPAAAPAPSKPAAAPAPSKPAAAPAPSKPAAAPAPSKPAAAPAPSKPAAA-PAPSK 2820

Query: 210  SRSAAA*TRPADPRTCLYVTKLECPTGSASR*SP-RGAAAPCGHTTPMRPATLPPGASPA 34
              +A A ++PA             P+  A+  +P + AAAP        PA   P A+PA
Sbjct: 2821 PAAAPAPSKPAAAPAPSKPAAAPAPSKPAAAPAPSKPAAAPAPSKPAAAPAPSKPAAAPA 2880

Query: 33   PSPRQTIPAPA 1
            PS     PAP+
Sbjct: 2881 PSKPAAAPAPS 2891

 Score = 46.2 bits (108), Expect = 1e-04
 Identities = 42/130 (32%), Positives = 57/130 (43%), Gaps = 6/130 (4%)
 Frame = -2

Query: 378  PSGLSPARSPLMS*-RTAPAPRRSRRTTTPRAPAA---PTRPLRTPNPCCTAATHPGSRC 211
            P+   PA +P  S    APAP +      P  PAA   P++P   P P   AA  P    
Sbjct: 2789 PAPSKPAAAPAPSKPAAAPAPSKPAAAPAPSKPAAAPAPSKPAAAPAPSKPAAA-PAPSK 2847

Query: 210  SRSAAA*TRPADPRTCLYVTKLECPTGSASR*SP-RGAAAPCGHTTPMRPATLPPGASPA 34
              +A A ++PA             P+  A+  +P + AAAP        PA   P A+PA
Sbjct: 2848 PAAAPAPSKPAAAPAPSKPAAAPAPSKPAAAPAPSKPAAAPAPSKPAAAPAPSKPAAAPA 2907

Query: 33   PS-PRQTIPA 7
            PS P+ T+ A
Sbjct: 2908 PSKPQNTLVA 2917

>ref|XP_302837.1| hypothetical protein XP_302837 [Homo sapiens]
          Length = 250

 Score = 51.6 bits (122), Expect = 2e-06
 Identities = 52/152 (34%), Positives = 62/152 (40%), Gaps = 16/152 (10%)
 Frame = -2

Query: 417 TPPPTAIARTLG*PSGLSPARSPLMS*RTAPAPRRSRRTTTPRAP-------AAPTR--- 268
           TPP  + ART   PS  SP R+P  +  T   PR S R T PRA        A+PTR   
Sbjct: 102 TPPTASPART---PSRASPRRTPPRASPTRTPPRASPRRTPPRASPRRTPPRASPTRAPP 158

Query: 267 ---PLRTPNPCCTAATHPGSRCSRSAAA*TRPADPRTCLYVTKLECPTGSASR*SPRGAA 97
              P RTP       T P +  +R+    +    P T         P  + SR SPR   
Sbjct: 159 RASPKRTPPRASPTRTPPRASPTRTPPTESPARTPPTA-------SPARTPSRASPRRMP 211

Query: 96  APCGHT-TPMR--PATLPPGASPAPSPRQTIP 10
                T TP R  P   PP ASP  +P    P
Sbjct: 212 PRASPTRTPPRASPTRTPPRASPKRTPPTASP 243

 Score = 47.4 bits (111), Expect = 5e-05
 Identities = 46/142 (32%), Positives = 56/142 (39%), Gaps = 3/142 (2%)
 Frame = -2

Query: 417 TPPPTAIARTLG*PSGLSPARSPLMS*RTAPAPRRSRRTTTPRAPAAPTRPLRTPNPCCT 238
           TPP  + ART   P   SPAR+P  +      PR S   T PRA    T P  +P     
Sbjct: 21  TPPTESPART---PPTASPARTPPRASPARTPPRASPGRTPPRASPRRTPPRASPR---R 74

Query: 237 AATHPGSRCSRSAAA*TRPADPRTCLYVTKLECPTGSASR*SPRGAAAPCGHT-TPMR-- 67
           A      R +   A+ TR     +         P  + SR SPR        T TP R  
Sbjct: 75  APPRASPRRTPPTASPTRTPPTESPARTPPTASPARTPSRASPRRTPPRASPTRTPPRAS 134

Query: 66  PATLPPGASPAPSPRQTIPAPA 1
           P   PP ASP  +P +  P  A
Sbjct: 135 PRRTPPRASPRRTPPRASPTRA 156

 Score = 43.1 bits (100), Expect = 9e-04
 Identities = 52/164 (31%), Positives = 63/164 (37%), Gaps = 27/164 (16%)
 Frame = -2

Query: 417 TPPPTAIARTLG*PSGLSPARSPLMS*RTAPAPRRSRRTTTPRAP-------AAPTR--- 268
           TPP  + ART   P   SP R+P  +      PR S R   PRA        A+PTR   
Sbjct: 39  TPPRASPART---PPRASPGRTPPRASPRRTPPRASPRRAPPRASPRRTPPTASPTRTPP 95

Query: 267 ------------PLRTPNPCCTAATHPGSRCSRSAA-A*TRPADPRTCLYVTKLEC-PTG 130
                       P RTP+      T P +  +R+   A  R   PR     T     PT 
Sbjct: 96  TESPARTPPTASPARTPSRASPRRTPPRASPTRTPPRASPRRTPPRASPRRTPPRASPTR 155

Query: 129 SASR*SPRGAAAPCGHT-TPMR--PATLPPGASPAPSPRQTIPA 7
           +  R SP+        T TP R  P   PP  SPA +P    PA
Sbjct: 156 APPRASPKRTPPRASPTRTPPRASPTRTPPTESPARTPPTASPA 199

 Score = 42.7 bits (99), Expect = 0.001
 Identities = 43/137 (31%), Positives = 55/137 (39%), Gaps = 1/137 (0%)
 Frame = -2

Query: 417 TPPPTAIARTLG*PSGLSPARSPLMS*RTAPAPRRSRRTTTPRAPAAPTRPLRTPNPCCT 238
           TP  T++ RT   P   SPAR+P        +P R+  T +P        P RTP     
Sbjct: 3   TPYTTSLTRT---PPTASPARTP-----PTESPARTPPTASPARTPPRASPARTPPRASP 54

Query: 237 AATHPGSRCSRS-AAA*TRPADPRTCLYVTKLECPTGSASR*SPRGAAAPCGHTTPMRPA 61
             T P +   R+   A  R A PR     T    PT S +R  P  +           PA
Sbjct: 55  GRTPPRASPRRTPPRASPRRAPPRASPRRTP---PTASPTRTPPTES-----------PA 100

Query: 60  TLPPGASPAPSPRQTIP 10
             PP ASPA +P +  P
Sbjct: 101 RTPPTASPARTPSRASP 117

>ref|NP_628191.1| putative bifunctional protein (histidine kinase and regulator)
            [Streptomyces coelicolor A3(2)]
            gi|13122173|emb|CAC32349.1| putative bifunctional protein
            (histidine kinase and regulator) [Streptomyces coelicolor
            A3(2)]
          Length = 1463

 Score = 51.2 bits (121), Expect = 3e-06
 Identities = 38/122 (31%), Positives = 51/122 (41%)
 Frame = -2

Query: 366  SPARSPLMS*RTAPAPRRSRRTTTPRAPAAPTRPLRTPNPCCTAATHPGSRCSRSAAA*T 187
            +P  +P  +   A APR +       APAAP +P   P P   AA   G+          
Sbjct: 957  APVPAPAATGTEAQAPRPAESGADTAAPAAPGQPAPAPQPWPAAADIQGAGA-------- 1008

Query: 186  RPADPRTCLYVTKLECPTGSASR*SPRGAAAPCGHTTPMRPATLPPGASPAPSPRQTIPA 7
             P  P + +       P   A+  +P+G  A    TTP R   LPP  +PAP   Q +PA
Sbjct: 1009 -PVPPGSPVPPGAAPAPAAPAAPAAPQGVPA----TTPSRGTPLPPENAPAPRAAQPLPA 1063

Query: 6    PA 1
             A
Sbjct: 1064 EA 1065

 Score = 31.6 bits (70), Expect = 2.6
 Identities = 28/97 (28%), Positives = 37/97 (37%)
 Frame = +2

Query: 2   AGAGIVCRGDGAGDAPGGSVAGRMGVV*PHGAAAPRGLQRLALPVGHSSFVTYKQVRGSA 181
           AGA I  +G G G   GG V   + V    G  A  G        G  +  +  +V G  
Sbjct: 657 AGAEISAQGQGQGQGQGGDVPAPLPVPAQAGPGAGAGTGGTGRRRGRPAETSGAEVAG-- 714

Query: 182 GRVHAAALLLQRDPGCVAAVQHGFGVRSGRVGAAGAL 292
             V  AAL    +   V A +HG G  +   G  G +
Sbjct: 715 --VPQAALGGVSEGAVVMAGEHGGGAAASNTGLGGTV 749

>gb|AAA59163.1| mucin
          Length = 1270

 Score = 50.1 bits (118), Expect = 7e-06
 Identities = 50/151 (33%), Positives = 61/151 (40%), Gaps = 13/151 (8%)
 Frame = -2

Query: 417  TPPPTA-----IARTLG*PSGLSPARSPLMS*RTAPAPRRSRRTTTPRAPAA-PTRPLRT 256
            TPPPT      I  T       +P  SP +S  T P P     TTTP  P   P+ P  T
Sbjct: 806  TPPPTTTPSPPITTTTTPLPTTTP--SPPISTTTTPPP-----TTTPSPPTTTPSPPTTT 858

Query: 255  PNPCCTAATHPGSRCSRS---AAA*TRPADPRTCLYVTKLECPTGSASR*SPRGAAAPCG 85
            P+P  T  T P    + S       T PA   T    T    PT + +   P    +P  
Sbjct: 859  PSPPTTTTTTPPPTTTPSPPMTTPITPPASTTTLPPTTTPSPPTTTTTTPPPTTTPSP-P 917

Query: 84   HTTPMRP----ATLPPGASPAPSPRQTIPAP 4
             TTP+ P     TLPP  +P+P P  T   P
Sbjct: 918  TTTPITPPTSTTTLPPTTTPSPPPTTTTTPP 948

 Score = 47.8 bits (112), Expect = 3e-05
 Identities = 40/140 (28%), Positives = 63/140 (44%), Gaps = 4/140 (2%)
 Frame = -2

Query: 417  TPPPTAIARTLG*PSGLSPARSPLMS*RTAPAPRRSRRTTTPRAPAAPTRPLRTPNPCCT 238
            TPPPT    T   P+  +P  SP ++  T P P  +  +     P+ PT  + TP+P  T
Sbjct: 1025 TPPPTT---TPSPPTTTTP--SPPITTTTTPPPTTTPSSPITTTPSPPTTTMTTPSPTTT 1079

Query: 237  AATHPGSRCSRSAAA*TRPADPRTCLYV----TKLECPTGSASR*SPRGAAAPCGHTTPM 70
             ++   +  + S+   T P+ P T +      T    PT + +   P   ++P   TTP+
Sbjct: 1080 PSSPITTTTTPSST--TTPSPPPTTMTTPSPTTTPSPPTTTMTTLPPTTTSSPLT-TTPL 1136

Query: 69   RPATLPPGASPAPSPRQTIP 10
             P+  PP  SP  +   T P
Sbjct: 1137 PPSITPPTFSPFSTTTPTTP 1156

 Score = 47.0 bits (110), Expect = 6e-05
 Identities = 49/151 (32%), Positives = 60/151 (39%), Gaps = 13/151 (8%)
 Frame = -2

Query: 417  TPPPTAIARTLG*PSGLSPARSPLMS*RTAPAPRR--SRRTTTPRAPAAPTR---PLRTP 253
            T P T  A T   P   +P  SP  +  T P P    S  TTTP  P   T    P  TP
Sbjct: 880  TTPITPPASTTTLPPTTTP--SPPTTTTTTPPPTTTPSPPTTTPITPPTSTTTLPPTTTP 937

Query: 252  NPCCTAATHPGSRCSRSAAA*TRPADPR----TCLYVTKLECPTGSASR*SPRGAAAPCG 85
            +P  T  T P    + S    T P+ P     T    T    PT + +   P    +P  
Sbjct: 938  SPPPTTTTTPPPTTTPSPPTTTTPSPPTITTTTPPPTTTPSPPTTTTTTPPPTTTPSP-P 996

Query: 84   HTTPMRP----ATLPPGASPAPSPRQTIPAP 4
             TTP+ P     TLPP  +P+P P  T   P
Sbjct: 997  TTTPITPPTSTTTLPPTTTPSPPPTTTTTPP 1027

 Score = 43.1 bits (100), Expect = 9e-04
 Identities = 38/134 (28%), Positives = 52/134 (38%), Gaps = 3/134 (2%)
 Frame = -2

Query: 417  TPPPTAIARTLG*PSGLSPARSPLMS*RTAPAPRRSRRTTTP--RAPAAPTRPLRTPNPC 244
            TPPPT             P  +  +   T P+P  +  TT P    P+ PT    TP+P 
Sbjct: 986  TPPPTTTPSPPTTTPITPPTSTTTLPPTTTPSPPPTTTTTPPPTTTPSPPTTT--TPSPP 1043

Query: 243  CTAATHPGSRCSRSAAA*TRPADPRTCLYVTKLECPTGSASR*SP-RGAAAPCGHTTPMR 67
             T  T P    + S+   T P+ P      T +  P+ + +  SP      P   TTP  
Sbjct: 1044 ITTTTTPPPTTTPSSPITTTPSPP-----TTTMTTPSPTTTPSSPITTTTTPSSTTTPSP 1098

Query: 66   PATLPPGASPAPSP 25
            P T     SP  +P
Sbjct: 1099 PPTTMTTPSPTTTP 1112

 Score = 40.4 bits (93), Expect = 0.006
 Identities = 41/150 (27%), Positives = 53/150 (35%), Gaps = 12/150 (8%)
 Frame = -2

Query: 417  TPPPTAIARTLG*PSGLSPARSPLMS*RTAPAPRRSRRTTTPRAPAAPT------RPLRT 256
            T P T    T   P   +P+  P  +  T P P  +    T   P+ PT       P  T
Sbjct: 919  TTPITPPTSTTTLPPTTTPSPPPTTT--TTPPPTTTPSPPTTTTPSPPTITTTTPPPTTT 976

Query: 255  PNPCCTAATHPGSRCSRS---AAA*TRPADPRTCLYVTKLECPTGSASR*SPRGAAAPCG 85
            P+P  T  T P    + S       T P    T    T    P  + +   P    +P  
Sbjct: 977  PSPPTTTTTTPPPTTTPSPPTTTPITPPTSTTTLPPTTTPSPPPTTTTTPPPTTTPSPPT 1036

Query: 84   HTTPMRP---ATLPPGASPAPSPRQTIPAP 4
             TTP  P    T PP  +   SP  T P+P
Sbjct: 1037 TTTPSPPITTTTTPPPTTTPSSPITTTPSP 1066

 Score = 38.9 bits (89), Expect = 0.016
 Identities = 37/122 (30%), Positives = 45/122 (36%), Gaps = 12/122 (9%)
 Frame = -2

Query: 333  TAPAPRRSRRTTTP--RAPAAPTR------PLRTPNPCCTAATHPGSRCSRSAAA*TRPA 178
            T P+P  +  TT P    P+ PT       P  TP+P  T  T P    + S    T   
Sbjct: 779  TTPSPPPTTTTTLPPTTTPSPPTTTTTTPPPTTTPSPPITTTTTPLPTTTPSPPISTTTT 838

Query: 177  DPRTCLYVTKLECPTGSASR*SP--RGAAAPCGHTTPMRPATLP--PGASPAPSPRQTIP 10
             P T         P+   +  SP       P   TTP  P T P  P AS    P  T P
Sbjct: 839  PPPTTTPSPPTTTPSPPTTTPSPPTTTTTTPPPTTTPSPPMTTPITPPASTTTLPPTTTP 898

Query: 9    AP 4
            +P
Sbjct: 899  SP 900



EST assemble image


clone accession position
1 MXL018d08_r BP094119 1 316
2 MXL010c01_r BP093566 118 351
3 MXL010a08_r BP093553 118 448




Chlamydomonas reinhardtii
Kazusa DNA Research Institute