KCC003420A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC003420A_C01 KCC003420A_c01
tgagctggcgcgcatttcagatgatgaggaggaggatgaccagggaaagcagccggtgga
gtttgaccaggcaatcaactACGTCAACAAGATTAAGACGCGCTTTGCAAACGATGAGCG
CGTGTACAAGGCGTTCTTGGAGATCCTCAACATGTATCGCAAGGGTCAGAAGACCATTAA
CCAGGTCTACGATGAGGTGGCCATCCTGTTCCGCAGCCACCAGGACCTGCTTGAGGAGTT
CACCTACTTCCTGCCGGACGGCACGCAGTCAGGCCTGGCGGCGCGCCAGCGCGCGGGCTT
CCCTCCGCCGCGGCGGCCAGGCCAGGGCCCGCTGCCGCCCCCTCCGGGTCGGATGCGGGT
GCCGCCGCAGGGCGCCATGTATGCGGCCGGTCCCATGAGCCCGGACATGCGCAACCTGCA
CCACAAGCGGAAAACCAAGATGGAGGGCGGATACCGTCGGGACGAGGAAGACGACGACAT
GGGCCGCGGCCGGCCGCAGCTGGCTAAGGAGCTGTCATACTTTGAGCGCGCCAAGCAGC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC003420A_C01 KCC003420A_c01
         (539 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

dbj|BAB78631.1| putative co-repressor protein [Oryza sativa (jap...   114  6e-25
pir||C96723 hypothetical protein F20P5.21 [imported] - Arabidops...   112  2e-24
ref|NP_177163.1| expressed protein [Arabidopsis thaliana]             112  2e-24
gb|AAF03494.1|AC010676_4 unknown protein [Arabidopsis thaliana]       110  9e-24
ref|NP_173829.1| expressed protein [Arabidopsis thaliana] gi|748...   106  2e-22

>dbj|BAB78631.1| putative co-repressor protein [Oryza sativa (japonica
           cultivar-group)]
          Length = 1589

 Score =  114 bits (286), Expect = 6e-25
 Identities = 67/148 (45%), Positives = 90/148 (60%), Gaps = 3/148 (2%)
 Frame = +2

Query: 47  KQPVEFDQAINYVNKIKTRFANDERVYKAFLEILNMYRKGQKTINQVYDEVAILFRSHQD 226
           K+PV+F +AIN+VNKIK RF +DE VYKAFL+ILNMYRK  K+I  VY EVA+LF  H+D
Sbjct: 318 KKPVDFVEAINFVNKIKNRFQHDEHVYKAFLDILNMYRKDNKSIQDVYHEVAVLFADHKD 377

Query: 227 LLEEFTYFLPDGTQSGLA-ARQRAGFPPPRRPGQGPLPPPPGRMRVPPQGAMYA--AGPM 397
           LLEEF +FLPD +    A A  R G    RR  +  L PP  R     +   +A      
Sbjct: 378 LLEEFQHFLPDTSVPPQAVAPSRPGI---RRDDRTSLVPPASRNEKRDKAHPHADRESVD 434

Query: 398 SPDMRNLHHKRKTKMEGGYRRDEEDDDM 481
            PD+ ++  +R+ K    Y R ++D ++
Sbjct: 435 RPDLDHVIQRRRPKDRHDYDRGDKDGEL 462

 Score = 40.8 bits (94), Expect = 0.012
 Identities = 20/71 (28%), Positives = 36/71 (50%)
 Frame = +2

Query: 50  QPVEFDQAINYVNKIKTRFANDERVYKAFLEILNMYRKGQKTINQVYDEVAILFRSHQDL 229
           Q +  + A+ Y+  +K +F +    Y+ FLE++  ++  +   N V   V  LF  + +L
Sbjct: 239 QKLTTNDALVYLKAVKDKFQDKREKYEEFLEVMRDFKSERIDTNGVIIRVKTLFNGYPEL 298

Query: 230 LEEFTYFLPDG 262
           +  F  FLP G
Sbjct: 299 ILGFNTFLPKG 309

>pir||C96723 hypothetical protein F20P5.21 [imported] - Arabidopsis thaliana
           gi|2194132|gb|AAB61107.1| F20P5.21 gene product
           [Arabidopsis thaliana]
          Length = 1383

 Score =  112 bits (281), Expect = 2e-24
 Identities = 62/105 (59%), Positives = 75/105 (71%), Gaps = 3/105 (2%)
 Frame = +2

Query: 32  EDDQG---KQPVEFDQAINYVNKIKTRFANDERVYKAFLEILNMYRKGQKTINQVYDEVA 202
           EDDQ    K+PVEF++AI++VNKIKTRF  D+RVYK+FL+ILNMYRK  K+I +VY EVA
Sbjct: 86  EDDQPAAPKKPVEFEEAISFVNKIKTRFQGDDRVYKSFLDILNMYRKENKSITEVYHEVA 145

Query: 203 ILFRSHQDLLEEFTYFLPDGTQSGLAARQRAGFPPPRRPGQGPLP 337
           ILFR H DLL EFT+FLPD   S  A+   +   P R  G   LP
Sbjct: 146 ILFRDHHDLLGEFTHFLPD--TSATASTNDSVKVPVRDRGIKSLP 188

 Score = 37.4 bits (85), Expect = 0.13
 Identities = 19/71 (26%), Positives = 36/71 (49%)
 Frame = +2

Query: 50  QPVEFDQAINYVNKIKTRFANDERVYKAFLEILNMYRKGQKTINQVYDEVAILFRSHQDL 229
           Q +  + A+ Y+  +K +F +    Y  FLE++  ++  +     V   V  LF+ +++L
Sbjct: 8   QKLTTNDALAYLKAVKDKFQDKRDKYDEFLEVMKDFKAQRVDTTGVILRVKELFKGNREL 67

Query: 230 LEEFTYFLPDG 262
           +  F  FLP G
Sbjct: 68  ILGFNTFLPKG 78

 Score = 31.2 bits (69), Expect = 9.2
 Identities = 21/81 (25%), Positives = 41/81 (49%), Gaps = 5/81 (6%)
 Frame = +2

Query: 68  QAINYVNKIKTRFANDERVYKAFLEILNMYRKGQKTINQVYDEVAILFRSHQDLLEEFTY 247
           Q + +V+++K +   D    + FL  LN+Y K   +  ++   V+ L   + DL++ F  
Sbjct: 313 QELAFVDRVKAKL--DTADNQEFLRCLNLYSKEIISQPELQSLVSDLIGVYPDLMDAFKV 370

Query: 248 FLP-----DGTQSGLAARQRA 295
           FL      DG  SG+ ++ ++
Sbjct: 371 FLAQCDKNDGLLSGIVSKSKS 391

>ref|NP_177163.1| expressed protein [Arabidopsis thaliana]
          Length = 1386

 Score =  112 bits (281), Expect = 2e-24
 Identities = 62/105 (59%), Positives = 75/105 (71%), Gaps = 3/105 (2%)
 Frame = +2

Query: 32  EDDQG---KQPVEFDQAINYVNKIKTRFANDERVYKAFLEILNMYRKGQKTINQVYDEVA 202
           EDDQ    K+PVEF++AI++VNKIKTRF  D+RVYK+FL+ILNMYRK  K+I +VY EVA
Sbjct: 86  EDDQPAAPKKPVEFEEAISFVNKIKTRFQGDDRVYKSFLDILNMYRKENKSITEVYHEVA 145

Query: 203 ILFRSHQDLLEEFTYFLPDGTQSGLAARQRAGFPPPRRPGQGPLP 337
           ILFR H DLL EFT+FLPD   S  A+   +   P R  G   LP
Sbjct: 146 ILFRDHHDLLGEFTHFLPD--TSATASTNDSVKVPVRDRGIKSLP 188

 Score = 37.4 bits (85), Expect = 0.13
 Identities = 19/71 (26%), Positives = 36/71 (49%)
 Frame = +2

Query: 50  QPVEFDQAINYVNKIKTRFANDERVYKAFLEILNMYRKGQKTINQVYDEVAILFRSHQDL 229
           Q +  + A+ Y+  +K +F +    Y  FLE++  ++  +     V   V  LF+ +++L
Sbjct: 8   QKLTTNDALAYLKAVKDKFQDKRDKYDEFLEVMKDFKAQRVDTTGVILRVKELFKGNREL 67

Query: 230 LEEFTYFLPDG 262
           +  F  FLP G
Sbjct: 68  ILGFNTFLPKG 78

 Score = 31.2 bits (69), Expect = 9.2
 Identities = 21/81 (25%), Positives = 41/81 (49%), Gaps = 5/81 (6%)
 Frame = +2

Query: 68  QAINYVNKIKTRFANDERVYKAFLEILNMYRKGQKTINQVYDEVAILFRSHQDLLEEFTY 247
           Q + +V+++K +   D    + FL  LN+Y K   +  ++   V+ L   + DL++ F  
Sbjct: 313 QELAFVDRVKAKL--DTADNQEFLRCLNLYSKEIISQPELQSLVSDLIGVYPDLMDAFKV 370

Query: 248 FLP-----DGTQSGLAARQRA 295
           FL      DG  SG+ ++ ++
Sbjct: 371 FLAQCDKNDGLLSGIVSKSKS 391

>gb|AAF03494.1|AC010676_4 unknown protein [Arabidopsis thaliana]
          Length = 1324

 Score =  110 bits (276), Expect = 9e-24
 Identities = 72/174 (41%), Positives = 98/174 (55%), Gaps = 15/174 (8%)
 Frame = +2

Query: 26  EEEDDQGKQPVEFDQAINYVNKIKTRFANDERVYKAFLEILNMYRKGQKTINQVYDEVAI 205
           EE+D   K+ VEF+QAIN+VNKIK RF +DE VYK+FLEILNMYRK  K I +VY+EV+I
Sbjct: 128 EEDDALPKKTVEFEQAINFVNKIKMRFKHDEHVYKSFLEILNMYRKENKEIKEVYNEVSI 187

Query: 206 LFRSHQDLLEEFTYFLPDGTQSGLAARQRAGFPPPRRPGQGPLPPPPGRMRVPP----QG 373
           LF+ H DLLE+FT FLP    S  AA Q +     +   +G  PP   +M+V      + 
Sbjct: 188 LFQGHLDLLEQFTRFLPASLPSHSAA-QHSRSQAQQYSDRGSDPPLLHQMQVEKERRRER 246

Query: 374 AMYAAGPMSPDMRNLH-----------HKRKTKMEGGYRRDEEDDDMGRGRPQL 502
           A+   G  S +  +L+            +++   E   RR  + DD   G+  L
Sbjct: 247 AVALRGDYSVERYDLNDDKTMVKIQREQRKRLDKENRARRGRDLDDREAGQDNL 300

 Score = 48.1 bits (113), Expect = 7e-05
 Identities = 25/87 (28%), Positives = 44/87 (49%), Gaps = 5/87 (5%)
 Frame = +2

Query: 17  SDDEEEDDQG-----KQPVEFDQAINYVNKIKTRFANDERVYKAFLEILNMYRKGQKTIN 181
           S D EE+++G      Q +  + A++Y+ ++K  F +    Y  FLE++  ++  +    
Sbjct: 35  SGDTEEEEEGGSRRVSQKLTTNDALSYLREVKEMFQDQREKYDRFLEVMKDFKAQRTDTG 94

Query: 182 QVYDEVAILFRSHQDLLEEFTYFLPDG 262
            V   V  LF+ H +L+  F  FLP G
Sbjct: 95  GVIARVKELFKGHNNLIYGFNTFLPKG 121

 Score = 32.7 bits (73), Expect = 3.2
 Identities = 18/63 (28%), Positives = 32/63 (50%)
 Frame = +2

Query: 62  FDQAINYVNKIKTRFANDERVYKAFLEILNMYRKGQKTINQVYDEVAILFRSHQDLLEEF 241
           + QA  +  K+K R  + +  Y+ FL+ LN++  G      + + V+ L     DL++EF
Sbjct: 335 YKQAFVFCEKVKDRLCSQDD-YQTFLKCLNIFSNGIIQRKDLQNLVSDLLGKFPDLMDEF 393

Query: 242 TYF 250
             F
Sbjct: 394 NQF 396

>ref|NP_173829.1| expressed protein [Arabidopsis thaliana] gi|7486361|pir||T00649
           hypothetical protein F3I6.12 - Arabidopsis thaliana
           gi|2829870|gb|AAC00578.1| Hypothetical protein
           [Arabidopsis thaliana]
          Length = 1263

 Score =  106 bits (265), Expect = 2e-22
 Identities = 52/80 (65%), Positives = 65/80 (81%), Gaps = 2/80 (2%)
 Frame = +2

Query: 26  EEEDDQG--KQPVEFDQAINYVNKIKTRFANDERVYKAFLEILNMYRKGQKTINQVYDEV 199
           + ED Q   K+ VEF++AI++VNKIKTRF  D+RVYK+FL+ILNMYR+  K+I +VY EV
Sbjct: 84  QPEDGQPPLKKRVEFEEAISFVNKIKTRFQGDDRVYKSFLDILNMYRRDSKSITEVYQEV 143

Query: 200 AILFRSHQDLLEEFTYFLPD 259
           AILFR H DLL EFT+FLPD
Sbjct: 144 AILFRDHSDLLVEFTHFLPD 163

 Score = 44.7 bits (104), Expect = 8e-04
 Identities = 24/89 (26%), Positives = 44/89 (48%)
 Frame = +2

Query: 50  QPVEFDQAINYVNKIKTRFANDERVYKAFLEILNMYRKGQKTINQVYDEVAILFRSHQDL 229
           Q +  + A+ Y+  +K +F +    Y  FLE++  ++  +     V   V  LF+ HQ+L
Sbjct: 8   QKLTTNDALAYLKAVKDKFQDQRGKYDEFLEVMKNFKSQRVDTAGVITRVKELFKGHQEL 67

Query: 230 LEEFTYFLPDGTQSGLAARQRAGFPPPRR 316
           +  F  FLP G +  +  +   G PP ++
Sbjct: 68  ILGFNTFLPKGFE--ITLQPEDGQPPLKK 94



EST assemble image


clone accession position
1 MXL009g05_r BP093533 1 274
2 MXL088a01_r BP098137 169 539




Chlamydomonas reinhardtii
Kazusa DNA Research Institute