KCC003414A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC003414A_C01 KCC003414A_c01
cacaaggaggacattgagtcggccatcaCGACGTACCACGCCATGTCGGAGCGCTGGTTC
ACCCACGCCTCGCCCACGCTGTTCAACGGCGGCACCCCCCGCCCCCAGCTGAGCAGCTGC
TTCCTGCTGGCCATGCGCGACGACTCCATTGACGGCATCTACGACACCCTCAAGGAGTGC
GCCGTGATTTCCAAGTCGGCTGGCGGCATCGGCCTGTCCATCCACTGCATCCGCGGCACT
GGCTCCTACATCCGCGGCACCAACGGCACCAGCAACGGCATCGTGCCCATGCTGCGCGTG
TTCAACGACACCGCCCGCTATGTGGACCAGGGCGGCGGCAAGCGCAAGGGCGCCTTCGCC
ATCTACATGGAGCCCTGGCACGCCGACGTGTTTGACTTCCTGGACCTGCGCAAGAACCAC
GGCAAGGAGGAGGCGCGCGCCCGCGACCTGTTCTACGGCCTGTGGATCCCCGACCTGTTC
ATGGAGCGTGT


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC003414A_C01 KCC003414A_c01
         (491 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

dbj|BAA78761.1| ESTs C27722(C52692),AU058088(S0509) correspond t...   310  5e-84
emb|CAA71816.1| ribonucleotide reductase [Nicotiana tabacum]          310  8e-84
gb|AAN87548.1|AF118785_1 ribonucleotide reductase large subunit ...   307  4e-83
gb|AAN87547.1|AF118784_1 ribonucleotide reductase large subunit ...   306  7e-83
emb|CAA71815.1| ribonucleotide reductase [Nicotiana tabacum]          306  9e-83

>dbj|BAA78761.1| ESTs C27722(C52692),AU058088(S0509) correspond to a region of the
           predicted gene.~Similar to Arabidopsis thaliana
           ribonucleoside-diphosphate reductase large subunit mRNA,
           complete cds.(AF092841) [Oryza sativa (japonica
           cultivar-group)]
          Length = 832

 Score =  310 bits (795), Expect = 5e-84
 Identities = 142/163 (87%), Positives = 155/163 (94%)
 Frame = +1

Query: 1   HKEDIESAITTYHAMSERWFTHASPTLFNGGTPRPQLSSCFLLAMRDDSIDGIYDTLKEC 180
           HK+DIESAI TYH MS+RWFTHASPTLFN GTPRPQLSSCFL+ M+DDSI+GIYDTLKEC
Sbjct: 210 HKDDIESAIKTYHLMSQRWFTHASPTLFNAGTPRPQLSSCFLICMKDDSIEGIYDTLKEC 269

Query: 181 AVISKSAGGIGLSIHCIRGTGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFA 360
           AVISKSAGGIG+S+H IR TGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFA
Sbjct: 270 AVISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFA 329

Query: 361 IYMEPWHADVFDFLDLRKNHGKEEARARDLFYGLWIPDLFMER 489
           +Y+EPWHAD+F+FLDLRKNHGKEE RARDLFY LW+PDLFM+R
Sbjct: 330 VYLEPWHADIFEFLDLRKNHGKEEHRARDLFYALWVPDLFMQR 372

>emb|CAA71816.1| ribonucleotide reductase [Nicotiana tabacum]
          Length = 808

 Score =  310 bits (793), Expect = 8e-84
 Identities = 140/163 (85%), Positives = 156/163 (94%)
 Frame = +1

Query: 1   HKEDIESAITTYHAMSERWFTHASPTLFNGGTPRPQLSSCFLLAMRDDSIDGIYDTLKEC 180
           HK+DIESAI TYH MS+RWFTHASPTLFN GTPRPQLSSCFL+ M++DSI+GIYDTLKEC
Sbjct: 179 HKDDIESAIKTYHLMSQRWFTHASPTLFNAGTPRPQLSSCFLVCMKEDSIEGIYDTLKEC 238

Query: 181 AVISKSAGGIGLSIHCIRGTGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFA 360
           AVISKSAGGIG+S+H IRGTGSYIRGTNGTSNGI+PMLRVFNDTARYVDQGGGKRKGAFA
Sbjct: 239 AVISKSAGGIGVSVHNIRGTGSYIRGTNGTSNGIIPMLRVFNDTARYVDQGGGKRKGAFA 298

Query: 361 IYMEPWHADVFDFLDLRKNHGKEEARARDLFYGLWIPDLFMER 489
           +Y+EPWH+D+F+FLD+RKNHGKEE RARDLFY LW+PDLFMER
Sbjct: 299 VYLEPWHSDIFEFLDMRKNHGKEEHRARDLFYALWVPDLFMER 341

>gb|AAN87548.1|AF118785_1 ribonucleotide reductase large subunit B [Glycine max]
          Length = 808

 Score =  307 bits (787), Expect = 4e-83
 Identities = 140/163 (85%), Positives = 155/163 (94%)
 Frame = +1

Query: 1   HKEDIESAITTYHAMSERWFTHASPTLFNGGTPRPQLSSCFLLAMRDDSIDGIYDTLKEC 180
           HK+DI+SA+ TYH MS+RWFTHASPTLFN GTPRPQLSSCFL+ M+DDSI+GIY+TLKEC
Sbjct: 179 HKDDIDSAVKTYHMMSQRWFTHASPTLFNAGTPRPQLSSCFLVCMKDDSIEGIYETLKEC 238

Query: 181 AVISKSAGGIGLSIHCIRGTGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFA 360
           A+ISKSAGGIG+SIH IR TGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFA
Sbjct: 239 AIISKSAGGIGVSIHDIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFA 298

Query: 361 IYMEPWHADVFDFLDLRKNHGKEEARARDLFYGLWIPDLFMER 489
           +Y+EPWHAD+F+FLDLRKNHGKEE RARDLFY LW+PDLFMER
Sbjct: 299 VYLEPWHADMFEFLDLRKNHGKEEHRARDLFYALWVPDLFMER 341

>gb|AAN87547.1|AF118784_1 ribonucleotide reductase large subunit A [Glycine max]
          Length = 809

 Score =  306 bits (785), Expect = 7e-83
 Identities = 140/163 (85%), Positives = 154/163 (93%)
 Frame = +1

Query: 1   HKEDIESAITTYHAMSERWFTHASPTLFNGGTPRPQLSSCFLLAMRDDSIDGIYDTLKEC 180
           HK+DI+SA+ TYH MS+RWFTHASPTLFN GTPRPQLSSCFL+ M+DDSI+GIYDTLKEC
Sbjct: 179 HKDDIDSAVRTYHMMSQRWFTHASPTLFNAGTPRPQLSSCFLVCMKDDSIEGIYDTLKEC 238

Query: 181 AVISKSAGGIGLSIHCIRGTGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFA 360
           AVISKSAGGIG+S+H IR TGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFA
Sbjct: 239 AVISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFA 298

Query: 361 IYMEPWHADVFDFLDLRKNHGKEEARARDLFYGLWIPDLFMER 489
           +Y+EPWHAD+F+FLDLRKNHGKEE RARDLFY LW+ DLFMER
Sbjct: 299 VYLEPWHADIFEFLDLRKNHGKEEHRARDLFYALWVSDLFMER 341

>emb|CAA71815.1| ribonucleotide reductase [Nicotiana tabacum]
          Length = 808

 Score =  306 bits (784), Expect = 9e-83
 Identities = 139/163 (85%), Positives = 154/163 (94%)
 Frame = +1

Query: 1   HKEDIESAITTYHAMSERWFTHASPTLFNGGTPRPQLSSCFLLAMRDDSIDGIYDTLKEC 180
           HK+DIES I TYH MS+RWFTHASPTLFN GTPRPQLSSCFL+ M++DSI+GIYDTLKEC
Sbjct: 179 HKDDIESVIKTYHLMSQRWFTHASPTLFNAGTPRPQLSSCFLICMKEDSIEGIYDTLKEC 238

Query: 181 AVISKSAGGIGLSIHCIRGTGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFA 360
           AVISKSAGGIG+S+H IR TGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFA
Sbjct: 239 AVISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFA 298

Query: 361 IYMEPWHADVFDFLDLRKNHGKEEARARDLFYGLWIPDLFMER 489
           +Y++PWHAD+F+FLDLRKNHGKEE RARDLFY LW+PDLFM+R
Sbjct: 299 VYLDPWHADIFEFLDLRKNHGKEEHRARDLFYALWVPDLFMQR 341



EST assemble image


clone accession position
1 MXL007a11_r BP093338 1 491
2 MXL092e08_r BP098384 29 485
3 MXL094f04_r BP098522 29 405




Chlamydomonas reinhardtii
Kazusa DNA Research Institute