KCC003404A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC003404A_C01 KCC003404A_c01
CACATCGATGCCTGCGCTGCCCATGCTAGAATCGGCATAAATACGCAACACCCACAGTCT
CACCACAATGCAGGCTGTCCCGGTTCGCGGCAAGCTTGGGCATGCCTCAAAGAGCATTAA
ATTCCTTAGCCCACGAGCGAGACGCCTGCTGTCGCTTTTATTCTTGGGCGGGGTCTTCTT
CTTCGCGTTCCTTTCATTCAGCACACACGTTAGGGATCCAGAGGCATCAAACTCTCGTAG
CGGCAAGAAGGCCCAGGTTAAGGCTGGCGGCGCGCTCCGGAGGGCGCTCAGCTCTGCCAC
GGATGGAGTGTCCACCATCTCGGCGGTACACGTAGAGGCCGGGACTAGCGAACTTGTGCC
GCGGAAACCCGTGAGGCTGCTGCTGGCCTCACACAATCGGCTGTTCTGGTATAGCGTGGA
TGACAACACCACGCAAGTACTGCACGAGGGCGAGGGGGTGCATTACGGCGTCTTCCCTGG
CGACTTTGACGCCGAC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC003404A_C01 KCC003404A_c01
         (496 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

emb|CAA59275.1| BMH2 [Saccharomyces cerevisiae]                        39  0.046
ref|NP_044530.1| RS1 [Human herpesvirus 2] gi|9629344|ref|NP_044...    38  0.060
ref|NP_010384.1| Brain Modulosignalin Homolog; Bmh2p [Saccharomy...    37  0.13
emb|CAA50656.1| BMH1 [Saccharomyces cerevisiae]                        36  0.30
ref|NP_011104.1| Brain Modulosignalin Homolog; Bmh1p [Saccharomy...    36  0.30

>emb|CAA59275.1| BMH2 [Saccharomyces cerevisiae]
          Length = 273

 Score = 38.5 bits (88), Expect = 0.046
 Identities = 20/65 (30%), Positives = 35/65 (53%)
 Frame = +2

Query: 251 AQVKAGGALRRALSSATDGVSTISAVHVEAGTSELVPRKPVRLLLASHNRLFWYSVDDNT 430
           A+  +G A  +A +S+ +   T S    E  T+EL P  P+RL LA +  +F+Y + ++ 
Sbjct: 135 AEFSSGDAREKATNSSLEAYKTAS----EIATTELPPTHPIRLFLALNFSVFYYEIQNSP 190

Query: 431 TQVLH 445
            +  H
Sbjct: 191 DKACH 195

>ref|NP_044530.1| RS1 [Human herpesvirus 2] gi|9629344|ref|NP_044544.1| RS1 [Human
            herpesvirus 2] gi|1869883|emb|CAB06707.1| RS1 [Human
            herpesvirus 2] gi|1869897|emb|CAB06701.1| RS1 [Human
            herpesvirus 2]
          Length = 1318

 Score = 38.1 bits (87), Expect = 0.060
 Identities = 29/81 (35%), Positives = 34/81 (41%), Gaps = 2/81 (2%)
 Frame = -3

Query: 482  RQGRRRNAPPRPRAVLAWCCHPRYTRTADCVRPAAASRVSAAQVR*SRPLRVPPR--WWT 309
            R+ R+R +P   RA       P     AD  RPAAA    AA      P   PPR    T
Sbjct: 788  REARKRKSPAPARAPPGGAPRPPKKSRADAPRPAAAPPAGAAPPAPPTPPPRPPRPAALT 847

Query: 308  LHPWQS*APSGARRQP*PGPS 246
              P +   P G  R+  PGPS
Sbjct: 848  RRPAEGPDPQGGWRRQPPGPS 868

>ref|NP_010384.1| Brain Modulosignalin Homolog; Bmh2p [Saccharomyces cerevisiae]
           gi|461631|sp|P34730|BMH2_YEAST BMH2 PROTEIN
           gi|1071865|pir||S51250 BMH2 protein - yeast
           (Saccharomyces cerevisiae) gi|402886|gb|AAA03336.1|
           Bmh2p gi|633635|emb|CAA87675.1| Bmh2p [Saccharomyces
           cerevisiae]
          Length = 273

 Score = 37.0 bits (84), Expect = 0.13
 Identities = 20/65 (30%), Positives = 35/65 (53%)
 Frame = +2

Query: 251 AQVKAGGALRRALSSATDGVSTISAVHVEAGTSELVPRKPVRLLLASHNRLFWYSVDDNT 430
           A+  +G A  +A +S+ +   T S    E  T+EL P  P+RL LA +  +F+Y + ++ 
Sbjct: 135 AEFSSGDAREKATNSSLEAYKTAS----EIATTELPPTHPIRLGLALNFSVFYYEIQNSP 190

Query: 431 TQVLH 445
            +  H
Sbjct: 191 DKACH 195

>emb|CAA50656.1| BMH1 [Saccharomyces cerevisiae]
          Length = 194

 Score = 35.8 bits (81), Expect = 0.30
 Identities = 19/65 (29%), Positives = 35/65 (53%)
 Frame = +2

Query: 251 AQVKAGGALRRALSSATDGVSTISAVHVEAGTSELVPRKPVRLLLASHNRLFWYSVDDNT 430
           A+  +G A  +A +++ +   T S    E  T+EL P  P+RL LA +  +F+Y + ++ 
Sbjct: 38  AEFSSGDAREKATNASLEAYKTAS----EIATTELPPTHPIRLGLALNFSVFYYEIQNSP 93

Query: 431 TQVLH 445
            +  H
Sbjct: 94  DKACH 98

>ref|NP_011104.1| Brain Modulosignalin Homolog; Bmh1p [Saccharomyces cerevisiae]
           gi|728968|sp|P29311|BMH1_YEAST BMH1 protein
           gi|320644|pir||S30863 BMH1 protein - yeast
           (Saccharomyces cerevisiae) gi|603418|gb|AAB64704.1|
           Bmh1p [Saccharomyces cerevisiae]
          Length = 267

 Score = 35.8 bits (81), Expect = 0.30
 Identities = 19/65 (29%), Positives = 35/65 (53%)
 Frame = +2

Query: 251 AQVKAGGALRRALSSATDGVSTISAVHVEAGTSELVPRKPVRLLLASHNRLFWYSVDDNT 430
           A+  +G A  +A +++ +   T S    E  T+EL P  P+RL LA +  +F+Y + ++ 
Sbjct: 135 AEFSSGDAREKATNASLEAYKTAS----EIATTELPPTHPIRLGLALNFSVFYYEIQNSP 190

Query: 431 TQVLH 445
            +  H
Sbjct: 191 DKACH 195



EST assemble image


clone accession position
1 MXL001d03_r BP092955 1 248
2 MXL078b06_r BP097588 1 383
3 MXL073b07_r BP097292 9 497




Chlamydomonas reinhardtii
Kazusa DNA Research Institute