Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC003399A_C01 KCC003399A_c01
(490 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|ZP_00057775.1| COG1205: Distinct helicase family with a uniq... 44 0.001
ref|ZP_00031479.1| COG2942: N-acyl-D-glucosamine 2-epimerase [Bu... 44 0.001
ref|NP_903278.1| 4-hydroxybenzoate octaprenyltransferase [Chromo... 43 0.002
ref|XP_128495.3| RIKEN cDNA 5033413A03 [Mus musculus] 42 0.003
ref|NP_780438.1| RIKEN cDNA 5033413A03 [Mus musculus] gi|2635495... 42 0.004
>ref|ZP_00057775.1| COG1205: Distinct helicase family with a unique C-terminal domain
including a metal-binding cysteine cluster [Thermobifida
fusca]
Length = 1958
Score = 43.9 bits (102), Expect = 0.001
Identities = 44/128 (34%), Positives = 49/128 (37%), Gaps = 7/128 (5%)
Frame = -3
Query: 485 LPRMRQSRLRR----FSQTGP---GRRTEVRRGRQGTEAGAGWRGWSRPGRALGRSRHRG 327
LPR R+ RLRR + GP GRR R R+ RG RP R R RG
Sbjct: 56 LPRARRPRLRRPRGGAALPGPRRGGRRRPAARHRRDRRPAVAGRGPGRPARL----RRRG 111
Query: 326 RQTRRSACSCGRRQKCHRQWTRPGRASRPGAMRRRAGAGSSAQRSLQQRQSAAHRRHHSP 147
+ RR C RR H RA+RP R G QR RQ R P
Sbjct: 112 PRRRRRLCPRPRRTPRH-------RAARPRLRR----TGPRRQRPHPHRQRPGRRTPARP 160
Query: 146 WSRHRCDP 123
R R P
Sbjct: 161 GHRGRGGP 168
>ref|ZP_00031479.1| COG2942: N-acyl-D-glucosamine 2-epimerase [Burkholderia fungorum]
Length = 613
Score = 43.5 bits (101), Expect = 0.001
Identities = 38/107 (35%), Positives = 46/107 (42%), Gaps = 8/107 (7%)
Frame = -3
Query: 488 RLPRMRQSRLRRFSQTG------PGRRTEVRRGRQGTEAGAGWRGWSRPGRALGRSRHR- 330
R PR RQ R R + T P RR ++R R+ A R +RP RA G HR
Sbjct: 71 RRPRPRQRRRARHASTARRTGPAPRRRVCLQRRRRARRAARMPR--ARPARARGHRHHRF 128
Query: 329 GRQTRRSACSCGRRQKCHRQWT-RPGRASRPGAMRRRAGAGSSAQRS 192
R +RR AC RQ + RP R P R R SA+ S
Sbjct: 129 RRHSRRRACHAAAVHHLGRQGSARPARRRAPARRRTRRTGSPSARPS 175
>ref|NP_903278.1| 4-hydroxybenzoate octaprenyltransferase [Chromobacterium violaceum
ATCC 12472] gi|34104913|gb|AAQ61270.1| 4-hydroxybenzoate
octaprenyltransferase [Chromobacterium violaceum ATCC
12472]
Length = 490
Score = 43.1 bits (100), Expect = 0.002
Identities = 40/102 (39%), Positives = 47/102 (45%), Gaps = 5/102 (4%)
Frame = -3
Query: 437 PGRRTEVRRGRQGTEAG-AGWRGWSRPGRALGRSRHRG--RQTRRSACSCGRRQKCHRQW 267
PGRR R GR+G AG AG + RP RA RH G R RR G +
Sbjct: 71 PGRRP--RAGRRGRGAGPAGRPAYVRPPRAADPGRHAGGVRPQRRPPRLSGLAAGAAARQ 128
Query: 266 TRPGRASRPGAMRR--RAGAGSSAQRSLQQRQSAAHRRHHSP 147
G P A+RR RAG ++A R +R SA RRH P
Sbjct: 129 PLAG----PDAVRRAARAGPRAAALRMAGRRPSAGRRRHPGP 166
>ref|XP_128495.3| RIKEN cDNA 5033413A03 [Mus musculus]
Length = 2607
Score = 42.4 bits (98), Expect = 0.003
Identities = 39/115 (33%), Positives = 53/115 (45%), Gaps = 2/115 (1%)
Frame = -3
Query: 488 RLPRMRQSRLRRFSQTGPGRRTEVRRGRQGTEAGAGWRGWSR-PGRALGRSRHRGRQTRR 312
R P R+SR R ++ RT RRGR + A R +R P R RSR + R++ R
Sbjct: 488 RTPARRRSRSRTPARRRSRSRTPARRGRSRSRTPARRRSRTRSPVRRRSRSRSQARRSGR 547
Query: 311 SACSCGRRQKCHRQWTRPGRA-SRPGAMRRRAGAGSSAQRSLQQRQSAAHRRHHS 150
S R R GR+ SR A R R+ + + A+RS + R RR S
Sbjct: 548 SRSRTPAR--------RSGRSRSRTPARRGRSRSRTPARRSARSRSRTPARRGRS 594
Score = 42.0 bits (97), Expect = 0.004
Identities = 41/127 (32%), Positives = 54/127 (42%), Gaps = 2/127 (1%)
Frame = -3
Query: 479 RMRQSRLRRFSQTGPGRRTEVRRGRQGTEAGAGWRGWSRPGRALGRSR--HRGRQTRRSA 306
R Q R R +Q R+ RRGR + GW SR + GRSR RGR RS
Sbjct: 410 RSPQWRRSRSAQRWGKSRSPQRRGRSRSPQRPGWSR-SRNTQRRGRSRSARRGRSHSRSP 468
Query: 305 CSCGRRQKCHRQWTRPGRASRPGAMRRRAGAGSSAQRSLQQRQSAAHRRHHSPWSRHRCD 126
+ GR + R R GR+ RRR+ + + A+R + R A R S R
Sbjct: 469 ATRGRSRS--RTPARRGRSRSRTPARRRSRSRTPARRRSRSRTPARRGRSRSRTPARRRS 526
Query: 125 PFCCPIR 105
P+R
Sbjct: 527 RTRSPVR 533
Score = 40.8 bits (94), Expect = 0.009
Identities = 41/120 (34%), Positives = 56/120 (46%), Gaps = 7/120 (5%)
Frame = -3
Query: 488 RLPRMRQSRLR-RFSQTGPGR-RTEVRRGRQGTEAGAGWRGWSR---PGRALGRSRHR-- 330
R P R+SR R + ++G R RT RR + RG SR P R RSR R
Sbjct: 529 RSPVRRRSRSRSQARRSGRSRSRTPARRSGRSRSRTPARRGRSRSRTPARRSARSRSRTP 588
Query: 329 GRQTRRSACSCGRRQKCHRQWTRPGRASRPGAMRRRAGAGSSAQRSLQQRQSAAHRRHHS 150
R+ R + + RR+ R R GR S +RR +GSS++R + R S R +S
Sbjct: 589 ARRGRSRSRTPARRRSRSRSLVRRGR-SHSRTPQRRGRSGSSSERKNKSRTSQRRSRSNS 647
Score = 38.1 bits (87), Expect = 0.058
Identities = 40/128 (31%), Positives = 50/128 (38%), Gaps = 9/128 (7%)
Frame = -3
Query: 488 RLPRMR-QSRLRRFSQTGPGRRTEVRRGRQGTEAGAGWRGWSRPGRALGRSRHR--GRQT 318
R P R +SR R ++ G R R R + A R SR GRSR R R+
Sbjct: 466 RSPATRGRSRSRTPARRGRSRSRTPARRRSRSRTPARRRSRSRTPARRGRSRSRTPARRR 525
Query: 317 RRSACSCGRRQKCHRQWTRPGR------ASRPGAMRRRAGAGSSAQRSLQQRQSAAHRRH 156
R+ RR + Q R GR A R G R R A RS + +A R
Sbjct: 526 SRTRSPVRRRSRSRSQARRSGRSRSRTPARRSGRSRSRTPARRGRSRSRTPARRSARSRS 585
Query: 155 HSPWSRHR 132
+P R R
Sbjct: 586 RTPARRGR 593
Score = 38.1 bits (87), Expect = 0.058
Identities = 39/122 (31%), Positives = 48/122 (38%), Gaps = 3/122 (2%)
Frame = -3
Query: 488 RLPRMRQSRLRRFSQTGPGRRTEVRRGRQG--TEAGAGWRGWSRPGRALGRSRHRGRQTR 315
R P R R R RT RRGR T A R SR GRSR R R
Sbjct: 551 RTPARRSGRSRS--------RTPARRGRSRSRTPARRSARSRSRTPARRGRSRSRTPARR 602
Query: 314 RS-ACSCGRRQKCHRQWTRPGRASRPGAMRRRAGAGSSAQRSLQQRQSAAHRRHHSPWSR 138
RS + S RR + H + P R R G+ R ++QR + S ++ H R
Sbjct: 603 RSRSRSLVRRGRSHSR--TPQRRGRSGSSSERKNKSRTSQRRSRSNSSPEMKKSHVSSRR 660
Query: 137 HR 132
R
Sbjct: 661 SR 662
Score = 35.0 bits (79), Expect = 0.49
Identities = 39/116 (33%), Positives = 51/116 (43%), Gaps = 10/116 (8%)
Frame = -3
Query: 467 SRLRRFSQTGPGRRTEVRRGRQGTEAGAGWRGWSRPGRALGR-SRHRG----RQTRRSAC 303
+R R S+T P R RR R T R SR A+ R SR R R+ RS
Sbjct: 1846 TRRRSRSRTSPVTR---RRSRSRTSPVTRRRSRSRTPPAIRRRSRSRTPLLPRKRSRSRS 1902
Query: 302 SCGRRQKCHRQWTRPGRASR-----PGAMRRRAGAGSSAQRSLQQRQSAAHRRHHS 150
R++ + R R R P A+RRR+ +GSS+ RS A R+HS
Sbjct: 1903 PLAIRRRSRSRTPRAARGKRSLTRSPPAIRRRSASGSSSDRSRSATPPAT--RNHS 1956
Score = 34.7 bits (78), Expect = 0.64
Identities = 34/92 (36%), Positives = 41/92 (43%), Gaps = 4/92 (4%)
Frame = -3
Query: 434 GRRTEVRRGRQGTEAGAGWRGWSR---PGRALGRSRHRGRQTRRSACSC-GRRQKCHRQW 267
GR RRGR + + A RG SR P R GRSR R RRS RR+ R
Sbjct: 453 GRSRSARRGRSHSRSPAT-RGRSRSRTPARR-GRSRSRTPARRRSRSRTPARRRSRSRTP 510
Query: 266 TRPGRASRPGAMRRRAGAGSSAQRSLQQRQSA 171
R GR+ RRR+ S +R + R A
Sbjct: 511 ARRGRSRSRTPARRRSRTRSPVRRRSRSRSQA 542
Score = 33.5 bits (75), Expect = 1.4
Identities = 33/107 (30%), Positives = 43/107 (39%)
Frame = -3
Query: 488 RLPRMRQSRLRRFSQTGPGRRTEVRRGRQGTEAGAGWRGWSRPGRALGRSRHRGRQTRRS 309
R P R +R R RT RRGR + A R SR GRS R Q R
Sbjct: 574 RTPARRSARSRS--------RTPARRGRSRSRTPARRRSRSRSLVRRGRSHSRTPQRRGR 625
Query: 308 ACSCGRRQKCHRQWTRPGRASRPGAMRRRAGAGSSAQRSLQQRQSAA 168
+ S R+ R R R++ M +++ S RSL +S A
Sbjct: 626 SGSSSERKNKSRTSQRRSRSNSSPEM-KKSHVSSRRSRSLSSPRSKA 671
Score = 32.7 bits (73), Expect = 2.4
Identities = 25/78 (32%), Positives = 31/78 (39%), Gaps = 2/78 (2%)
Frame = -3
Query: 365 RPGRALGRSRHRGRQTRRSACSCGRRQKCHRQWTRPGRASRPGAMR--RRAGAGSSAQRS 192
R GR+ + RGR R+ G + QW R A R G R +R G S QR
Sbjct: 382 RAGRSRSPATKRGRSRSRTPTKRGHSRSRSPQWRRSRSAQRWGKSRSPQRRGRSRSPQRP 441
Query: 191 LQQRQSAAHRRHHSPWSR 138
R RR S +R
Sbjct: 442 GWSRSRNTQRRGRSRSAR 459
Score = 31.6 bits (70), Expect = 5.4
Identities = 38/115 (33%), Positives = 49/115 (42%), Gaps = 5/115 (4%)
Frame = -3
Query: 479 RMRQSRLRRFSQTGPG---RRTEVRRGRQGTEAGAGWRGWSRPGRALGRSRHR--GRQTR 315
R Q R R S PG R RRGR + + R SR GRSR R R+ R
Sbjct: 427 RSPQRRGRSRSPQRPGWSRSRNTQRRGR--SRSARRGRSHSRSPATRGRSRSRTPARRGR 484
Query: 314 RSACSCGRRQKCHRQWTRPGRASRPGAMRRRAGAGSSAQRSLQQRQSAAHRRHHS 150
+ + RR+ R R SR A R R+ + + A+R + R S RR S
Sbjct: 485 SRSRTPARRRSRSRTPARRRSRSRTPARRGRSRSRTPARRRSRTR-SPVRRRSRS 538
>ref|NP_780438.1| RIKEN cDNA 5033413A03 [Mus musculus] gi|26354955|dbj|BAC41104.1|
unnamed protein product [Mus musculus]
Length = 2607
Score = 42.0 bits (97), Expect = 0.004
Identities = 41/127 (32%), Positives = 54/127 (42%), Gaps = 2/127 (1%)
Frame = -3
Query: 479 RMRQSRLRRFSQTGPGRRTEVRRGRQGTEAGAGWRGWSRPGRALGRSR--HRGRQTRRSA 306
R Q R R +Q R+ RRGR + GW SR + GRSR RGR RS
Sbjct: 410 RSPQWRRSRSAQRWGKSRSPQRRGRSRSPQRPGWSR-SRNTQRRGRSRSARRGRSHSRSP 468
Query: 305 CSCGRRQKCHRQWTRPGRASRPGAMRRRAGAGSSAQRSLQQRQSAAHRRHHSPWSRHRCD 126
+ GR + R R GR+ RRR+ + + A+R + R A R S R
Sbjct: 469 ATRGRSRS--RTPARRGRSRSRTPARRRSRSRTPARRRSRSRTPARRGRSRSRTPTRRRS 526
Query: 125 PFCCPIR 105
P+R
Sbjct: 527 RTRSPVR 533
Score = 40.8 bits (94), Expect = 0.009
Identities = 41/120 (34%), Positives = 56/120 (46%), Gaps = 7/120 (5%)
Frame = -3
Query: 488 RLPRMRQSRLR-RFSQTGPGR-RTEVRRGRQGTEAGAGWRGWSR---PGRALGRSRHR-- 330
R P R+SR R + ++G R RT RR + RG SR P R RSR R
Sbjct: 529 RSPVRRRSRSRSQARRSGRSRSRTPARRSGRSRSRTPARRGRSRSRTPARRSARSRSRTP 588
Query: 329 GRQTRRSACSCGRRQKCHRQWTRPGRASRPGAMRRRAGAGSSAQRSLQQRQSAAHRRHHS 150
R+ R + + RR+ R R GR S +RR +GSS++R + R S R +S
Sbjct: 589 ARRGRSRSRTPARRRSRSRSLVRRGR-SHSRTPQRRGRSGSSSERKNKSRTSQRRSRSNS 647
Score = 40.8 bits (94), Expect = 0.009
Identities = 38/115 (33%), Positives = 52/115 (45%), Gaps = 2/115 (1%)
Frame = -3
Query: 488 RLPRMRQSRLRRFSQTGPGRRTEVRRGRQGTEAGAGWRGWSR-PGRALGRSRHRGRQTRR 312
R P R+SR R ++ RT RRGR + R +R P R RSR + R++ R
Sbjct: 488 RTPARRRSRSRTPARRRSRSRTPARRGRSRSRTPTRRRSRTRSPVRRRSRSRSQARRSGR 547
Query: 311 SACSCGRRQKCHRQWTRPGRA-SRPGAMRRRAGAGSSAQRSLQQRQSAAHRRHHS 150
S R R GR+ SR A R R+ + + A+RS + R RR S
Sbjct: 548 SRSRTPAR--------RSGRSRSRTPARRGRSRSRTPARRSARSRSRTPARRGRS 594
Score = 38.1 bits (87), Expect = 0.058
Identities = 39/122 (31%), Positives = 48/122 (38%), Gaps = 3/122 (2%)
Frame = -3
Query: 488 RLPRMRQSRLRRFSQTGPGRRTEVRRGRQG--TEAGAGWRGWSRPGRALGRSRHRGRQTR 315
R P R R R RT RRGR T A R SR GRSR R R
Sbjct: 551 RTPARRSGRSRS--------RTPARRGRSRSRTPARRSARSRSRTPARRGRSRSRTPARR 602
Query: 314 RS-ACSCGRRQKCHRQWTRPGRASRPGAMRRRAGAGSSAQRSLQQRQSAAHRRHHSPWSR 138
RS + S RR + H + P R R G+ R ++QR + S ++ H R
Sbjct: 603 RSRSRSLVRRGRSHSR--TPQRRGRSGSSSERKNKSRTSQRRSRSNSSPEMKKSHVSSRR 660
Query: 137 HR 132
R
Sbjct: 661 SR 662
Score = 37.7 bits (86), Expect = 0.075
Identities = 41/118 (34%), Positives = 52/118 (43%), Gaps = 5/118 (4%)
Frame = -3
Query: 488 RLPRMRQSRLRRFSQTGPGR-RTEVRRGRQGTEAGAGWRGWSR-PGRALGRSRHRGRQTR 315
R R +S R + G R RT RRGR + A R SR P R RSR R+ R
Sbjct: 456 RSARRGRSHSRSPATRGRSRSRTPARRGRSRSRTPARRRSRSRTPARRRSRSRTPARRGR 515
Query: 314 RSACSCGRRQKCHRQWTRPGRASRPGAMRRRAGAGSS---AQRSLQQRQSAAHRRHHS 150
+ + RR+ R R R SR + RR+G S A+RS + R RR S
Sbjct: 516 SRSRTPTRRRSRTRSPVR--RRSRSRSQARRSGRSRSRTPARRSGRSRSRTPARRGRS 571
Score = 35.8 bits (81), Expect = 0.29
Identities = 37/117 (31%), Positives = 46/117 (38%)
Frame = -3
Query: 488 RLPRMRQSRLRRFSQTGPGRRTEVRRGRQGTEAGAGWRGWSRPGRALGRSRHRGRQTRRS 309
R R R +R R P R R R T A G P R RSR R+ RS
Sbjct: 451 RRGRSRSARRGRSHSRSPATRG---RSRSRTPARRGRSRSRTPARRRSRSRTPARRRSRS 507
Query: 308 ACSCGRRQKCHRQWTRPGRASRPGAMRRRAGAGSSAQRSLQQRQSAAHRRHHSPWSR 138
R + R TR R+ +RRR+ + S A+RS + R RR SR
Sbjct: 508 RTPARRGRSRSRTPTR-RRSRTRSPVRRRSRSRSQARRSGRSRSRTPARRSGRSRSR 563
Score = 35.0 bits (79), Expect = 0.49
Identities = 39/116 (33%), Positives = 51/116 (43%), Gaps = 10/116 (8%)
Frame = -3
Query: 467 SRLRRFSQTGPGRRTEVRRGRQGTEAGAGWRGWSRPGRALGR-SRHRG----RQTRRSAC 303
+R R S+T P R RR R T R SR A+ R SR R R+ RS
Sbjct: 1846 TRRRSRSRTSPVTR---RRSRSRTSPVTRRRSRSRTPPAIRRRSRSRTPLLPRKRSRSRS 1902
Query: 302 SCGRRQKCHRQWTRPGRASR-----PGAMRRRAGAGSSAQRSLQQRQSAAHRRHHS 150
R++ + R R R P A+RRR+ +GSS+ RS A R+HS
Sbjct: 1903 PLAIRRRSRSRTPRAARGKRSLTRSPPAIRRRSASGSSSDRSRSATPPAT--RNHS 1956
Score = 33.5 bits (75), Expect = 1.4
Identities = 33/107 (30%), Positives = 43/107 (39%)
Frame = -3
Query: 488 RLPRMRQSRLRRFSQTGPGRRTEVRRGRQGTEAGAGWRGWSRPGRALGRSRHRGRQTRRS 309
R P R +R R RT RRGR + A R SR GRS R Q R
Sbjct: 574 RTPARRSARSRS--------RTPARRGRSRSRTPARRRSRSRSLVRRGRSHSRTPQRRGR 625
Query: 308 ACSCGRRQKCHRQWTRPGRASRPGAMRRRAGAGSSAQRSLQQRQSAA 168
+ S R+ R R R++ M +++ S RSL +S A
Sbjct: 626 SGSSSERKNKSRTSQRRSRSNSSPEM-KKSHVSSRRSRSLSSPRSKA 671
Score = 32.7 bits (73), Expect = 2.4
Identities = 25/78 (32%), Positives = 31/78 (39%), Gaps = 2/78 (2%)
Frame = -3
Query: 365 RPGRALGRSRHRGRQTRRSACSCGRRQKCHRQWTRPGRASRPGAMR--RRAGAGSSAQRS 192
R GR+ + RGR R+ G + QW R A R G R +R G S QR
Sbjct: 382 RAGRSRSPATKRGRSRSRTPTKRGHSRSRSPQWRRSRSAQRWGKSRSPQRRGRSRSPQRP 441
Query: 191 LQQRQSAAHRRHHSPWSR 138
R RR S +R
Sbjct: 442 GWSRSRNTQRRGRSRSAR 459
