KCC003395A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC003395A_C01 KCC003395A_c01
gcagttcaaggacctgaccaagtggtggaagaaggtggtggacgactccaagctgcaggg
cgtcaaggtgtccaaccgccTGGCCACCACCCCCTGCATCGTGGTCACCGGCAAGTACGG
CAACAGCGCCAACATGGAGCGCATCATGCGCGCACAGGCCTTCTCCCGCCCCGGCTCCTC
CTTCACCCCCACCCAGCGCACGCTGGAGATCAACCCCCGCCACCCGCTCATCGTGGCGCT
CAAGGACAAGCTGGCCGCCGCCACCGAGGAGACCGTGGAGGAGAGCGCCGTGGCCACCGC
GCGCCTGCTGTACGAGACCGCGCTGCTGGAGTCGGGCTTTGTGCCCGATGACGCCAAGGC
CTTCTCGCAGCGCATGTACGGCGTCCTGAAGGACACGCTGGGCGTGGACAGCCTGGAGGT
GGCGCTGGAGGCGGAGGAGGCCGCCGAGCCCGAGGAGGCGGAGGAGAAGGCGGAGGAGAC
GGAGGAGAAGGCGGAGGAGACGGAGG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC003395A_C01 KCC003395A_c01
         (506 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_194150.1| shepherd (SHD) [Arabidopsis thaliana] gi|744189...   144  6e-34
sp|P36183|ENPL_HORVU ENDOPLASMIN HOMOLOG PRECURSOR (GRP94 HOMOLO...   144  6e-34
gb|AAB63606.1| HSP90 isolog [Arabidopsis thaliana]                    144  6e-34
dbj|BAB86368.1| SHEPHERD [Arabidopsis thaliana]                       144  8e-34
gb|AAL79732.1|AC091774_23 heat shock protein 90 [Oryza sativa]        142  3e-33

>ref|NP_194150.1| shepherd (SHD) [Arabidopsis thaliana] gi|7441896|pir||T09882 heat
            shock protein 90 homolog T22A6.20 - Arabidopsis thaliana
            gi|5051761|emb|CAB45054.1| HSP90-like protein
            [Arabidopsis thaliana] gi|7269269|emb|CAB79329.1|
            HSP90-like protein [Arabidopsis thaliana]
            gi|14532542|gb|AAK63999.1| AT4g24190/T22A6_20
            [Arabidopsis thaliana] gi|19570872|dbj|BAB86369.1|
            SHEPHERD [Arabidopsis thaliana]
            gi|28416485|gb|AAO42773.1| At4g24190/T22A6_20
            [Arabidopsis thaliana]
          Length = 823

 Score =  144 bits (363), Expect = 6e-34
 Identities = 80/166 (48%), Positives = 109/166 (65%), Gaps = 1/166 (0%)
 Frame = +2

Query: 5    FKDLTKWWKKVVDDSKLQGVKVSNRLATTPCIVVTGKYGNSANMERIMRAQAFSRPG-SS 181
            FK+LTKWWK  +    +  VK+SNRLA TPC+VVT K+G SANMERIM++Q  S     +
Sbjct: 641  FKELTKWWKGNLASENVDDVKISNRLADTPCVVVTSKFGWSANMERIMQSQTLSDANKQA 700

Query: 182  FTPTQRTLEINPRHPLIVALKDKLAAATEETVEESAVATARLLYETALLESGFVPDDAKA 361
            +   +R LEINPRHP+I  LKD++A+  E   +ES   TA+L+Y+TAL+ESGF+  D K 
Sbjct: 701  YMRGKRVLEINPRHPIIKELKDRIASDPE---DESVKETAQLMYQTALIESGFILTDPKD 757

Query: 362  FSQRMYGVLKDTLGVDSLEVALEAEEAAEPEEAEEKAEETEEKAEE 499
            F+ R+Y  +K  L +    VA E  EAAE  E    +E TE K+++
Sbjct: 758  FAARIYNSVKSGLNISPDAVADEEIEAAEEPET---SEATETKSDD 800

>sp|P36183|ENPL_HORVU ENDOPLASMIN HOMOLOG PRECURSOR (GRP94 HOMOLOG) gi|485498|pir||S33533
            heat shock protein 90 homolog precursor - barley
            gi|22652|emb|CAA48143.1| GRP94 homologue [Hordeum
            vulgare]
          Length = 809

 Score =  144 bits (363), Expect = 6e-34
 Identities = 80/168 (47%), Positives = 111/168 (65%), Gaps = 1/168 (0%)
 Frame = +2

Query: 5    FKDLTKWWKKVVDDSKLQGVKVSNRLATTPCIVVTGKYGNSANMERIMRAQAFSRPG-SS 181
            FK+LT WWKK +D   +  VK+SNRL  TPC+VVT KYG S+NME+IM+AQ  S     +
Sbjct: 638  FKELTDWWKKALDTEGIDSVKISNRLHNTPCVVVTSKYGWSSNMEKIMQAQTLSDASKQA 697

Query: 182  FTPTQRTLEINPRHPLIVALKDKLAAATEETVEESAVATARLLYETALLESGFVPDDAKA 361
            +   +R LEINPRHP+I  L+DK+A   +++  E    TARL+Y+TAL+ESGF   D K 
Sbjct: 698  YMRGKRVLEINPRHPIIKELRDKVA---QDSDSEGLKQTARLVYQTALMESGFNLPDPKD 754

Query: 362  FSQRMYGVLKDTLGVDSLEVALEAEEAAEPEEAEEKAEETEEKAEETE 505
            F+  +Y  ++ +L + S + A+E EE  E  E EEK E  +++AEE E
Sbjct: 755  FASSIYRSVQKSLDL-SPDAAVEEEEEVEEPEVEEK-ESAKQEAEEPE 800

>gb|AAB63606.1| HSP90 isolog [Arabidopsis thaliana]
          Length = 335

 Score =  144 bits (363), Expect = 6e-34
 Identities = 80/166 (48%), Positives = 109/166 (65%), Gaps = 1/166 (0%)
 Frame = +2

Query: 5   FKDLTKWWKKVVDDSKLQGVKVSNRLATTPCIVVTGKYGNSANMERIMRAQAFSRPG-SS 181
           FK+LTKWWK  +    +  VK+SNRLA TPC+VVT K+G SANMERIM++Q  S     +
Sbjct: 153 FKELTKWWKGNLASENVDDVKISNRLADTPCVVVTSKFGWSANMERIMQSQTLSDANKQA 212

Query: 182 FTPTQRTLEINPRHPLIVALKDKLAAATEETVEESAVATARLLYETALLESGFVPDDAKA 361
           +   +R LEINPRHP+I  LKD++A+  E   +ES   TA+L+Y+TAL+ESGF+  D K 
Sbjct: 213 YMRGKRVLEINPRHPIIKELKDRIASDPE---DESVKETAQLMYQTALIESGFILTDPKD 269

Query: 362 FSQRMYGVLKDTLGVDSLEVALEAEEAAEPEEAEEKAEETEEKAEE 499
           F+ R+Y  +K  L +    VA E  EAAE  E    +E TE K+++
Sbjct: 270 FAARIYNSVKSGLNISPDAVADEEIEAAEEPET---SEATETKSDD 312

>dbj|BAB86368.1| SHEPHERD [Arabidopsis thaliana]
          Length = 823

 Score =  144 bits (362), Expect = 8e-34
 Identities = 80/166 (48%), Positives = 109/166 (65%), Gaps = 1/166 (0%)
 Frame = +2

Query: 5    FKDLTKWWKKVVDDSKLQGVKVSNRLATTPCIVVTGKYGNSANMERIMRAQAFSRPG-SS 181
            FK+LTKWWK  +    +  VK+SNRLA TPC+VVT K+G SANMERIM++Q  S     +
Sbjct: 641  FKELTKWWKGNLASENVDDVKISNRLADTPCVVVTSKFGWSANMERIMQSQTLSDANKQA 700

Query: 182  FTPTQRTLEINPRHPLIVALKDKLAAATEETVEESAVATARLLYETALLESGFVPDDAKA 361
            +   +R LEINPRHP+I  LKD++A+  E   +ES   TA+L+Y+TAL+ESGF+  D K 
Sbjct: 701  YMRGKRVLEINPRHPIIKELKDRIASDPE---DESVKETAQLMYQTALIESGFLLTDPKD 757

Query: 362  FSQRMYGVLKDTLGVDSLEVALEAEEAAEPEEAEEKAEETEEKAEE 499
            F+ R+Y  +K  L +    VA E  EAAE  E    +E TE K+++
Sbjct: 758  FAARIYNSVKSGLNISPDAVADEEVEAAEEPET---SEATETKSDD 800

>gb|AAL79732.1|AC091774_23 heat shock protein 90 [Oryza sativa]
          Length = 812

 Score =  142 bits (357), Expect = 3e-33
 Identities = 78/166 (46%), Positives = 111/166 (65%), Gaps = 2/166 (1%)
 Frame = +2

Query: 5    FKDLTKWWKKVVDDSKLQGVKVSNRLATTPCIVVTGKYGNSANMERIMRAQAFSRPG-SS 181
            FK+LT WWKK +D   +  VK+SNRL+ TPC+VVT KYG SANME+IM++Q  S     +
Sbjct: 642  FKELTDWWKKALDTESVDSVKISNRLSDTPCVVVTSKYGWSANMEKIMQSQTLSDASKQA 701

Query: 182  FTPTQRTLEINPRHPLIVALKDKLAAATEETVEESAVATARLLYETALLESGFVPDDAKA 361
            +   +R LEINPRHP+I  L+DK+A   +++  ES   TA+L+Y+TAL+ESGF   D K 
Sbjct: 702  YMRGKRVLEINPRHPIIKELRDKVA---QDSESESLKQTAKLVYQTALMESGFNLPDPKD 758

Query: 362  FSQRMYGVLKDTLGVDSLEVALEAEEAAEPEEAEEK-AEETEEKAE 496
            F+  +Y  ++ +L + S + A+E EE  E  E EEK +   +E+AE
Sbjct: 759  FASSIYRSVQKSLDL-SPDAAVEEEEEVEEAEVEEKESSNIKEEAE 803



EST assemble image


clone accession position
1 MX216c04_r BP089941 1 293
2 MX204f07_r BP089304 136 506




Chlamydomonas reinhardtii
Kazusa DNA Research Institute