KCC003381A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC003381A_C01 KCC003381A_c01
CTGCCCTCTGGCTGAAGAAAGACCTAATATTCCTCCGATTCGGACAAGGTGGCACTTGTC
TACCCGCACCTGCCTCGGACTCGGCTATCAAGGAGCATTAATACTATCGGACGTTATGCG
TTACAATCGTCAGTAGGAGCCGATACCCTACTTCCGGTCTGGACGTAGCTCGAACGCATC
GACGATGAGACCTGTCTTTTTAGAGGGCCCGGGCACTGAAGTCCAATACCCAGTATCTGC
ACACACGGCAAACTACTCAGATGCATAGACAGCGAGGGAGGTCATCCTGCACACCGGCTT
CGTCGGGCTGTTCTTCAACGGGTGCCTCGTGTCGGCCTTCATAGCCTTTTTTATAGCGCA
GACCTGTAACGTGTTCACGCACTACTACACCGAGCAGGTGTGGGACTTGCAACGCATGGT
GGGGTCTGGCGGCATGCCCAGCTCCCACA


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC003381A_C01 KCC003381A_c01
         (449 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAG52298.1|AC011020_5 unknown protein [Arabidopsis thaliana]        62  2e-09
ref|NP_176927.1| F12A21.27 [Arabidopsis thaliana] gi|25303765|pi...    62  2e-09
gb|AAM63820.1| unknown [Arabidopsis thaliana]                          59  1e-08
gb|AAF97982.1|AC000103_32 F21J9.1 [Arabidopsis thaliana]               58  3e-08
ref|NP_564215.1| expressed protein [Arabidopsis thaliana]              58  3e-08

>gb|AAG52298.1|AC011020_5 unknown protein [Arabidopsis thaliana]
          Length = 143

 Score = 62.0 bits (149), Expect = 2e-09
 Identities = 28/50 (56%), Positives = 37/50 (74%)
 Frame = +2

Query: 299 FVGLFFNGCLVSAFIAFFIAQTCNVFTHYYTEQVWDLQRMVGSGGMPSSH 448
           ++ +F N  L+SA +AF IAQ    FT +Y E+ WDL+R+VGSGGMPSSH
Sbjct: 12  YISIFTNYPLISAVLAFTIAQFIKFFTSWYKERRWDLKRLVGSGGMPSSH 61

>ref|NP_176927.1| F12A21.27 [Arabidopsis thaliana] gi|25303765|pir||E96699 protein
           F12A21.27 [imported] - Arabidopsis thaliana
           gi|11072018|gb|AAG28897.1|AC008113_13 F12A21.27
           [Arabidopsis thaliana] gi|21555489|gb|AAM63870.1|
           unknown [Arabidopsis thaliana]
          Length = 163

 Score = 62.0 bits (149), Expect = 2e-09
 Identities = 28/50 (56%), Positives = 37/50 (74%)
 Frame = +2

Query: 299 FVGLFFNGCLVSAFIAFFIAQTCNVFTHYYTEQVWDLQRMVGSGGMPSSH 448
           ++ +F N  L+SA +AF IAQ    FT +Y E+ WDL+R+VGSGGMPSSH
Sbjct: 12  YISIFTNYPLISAVLAFTIAQFIKFFTSWYKERRWDLKRLVGSGGMPSSH 61

>gb|AAM63820.1| unknown [Arabidopsis thaliana]
          Length = 168

 Score = 58.9 bits (141), Expect = 1e-08
 Identities = 26/52 (50%), Positives = 38/52 (73%)
 Frame = +2

Query: 293 TGFVGLFFNGCLVSAFIAFFIAQTCNVFTHYYTEQVWDLQRMVGSGGMPSSH 448
           T ++ +F N  L+SA  +F IAQ   +FT +Y E+ WDL++++GSGGMPSSH
Sbjct: 14  THYLSIFTNYPLISAVTSFTIAQFIKLFTSWYRERRWDLKQLIGSGGMPSSH 65

>gb|AAF97982.1|AC000103_32 F21J9.1 [Arabidopsis thaliana]
          Length = 150

 Score = 58.2 bits (139), Expect = 3e-08
 Identities = 26/52 (50%), Positives = 37/52 (71%)
 Frame = +2

Query: 293 TGFVGLFFNGCLVSAFIAFFIAQTCNVFTHYYTEQVWDLQRMVGSGGMPSSH 448
           T +  +F N  L+SA  +F IAQ   +FT +Y E+ WDL++++GSGGMPSSH
Sbjct: 14  THYFSIFTNYPLISAVTSFTIAQFIKLFTSWYRERRWDLKQLIGSGGMPSSH 65

>ref|NP_564215.1| expressed protein [Arabidopsis thaliana]
          Length = 168

 Score = 58.2 bits (139), Expect = 3e-08
 Identities = 26/52 (50%), Positives = 37/52 (71%)
 Frame = +2

Query: 293 TGFVGLFFNGCLVSAFIAFFIAQTCNVFTHYYTEQVWDLQRMVGSGGMPSSH 448
           T +  +F N  L+SA  +F IAQ   +FT +Y E+ WDL++++GSGGMPSSH
Sbjct: 14  THYFSIFTNYPLISAVTSFTIAQFIKLFTSWYRERRWDLKQLIGSGGMPSSH 65



EST assemble image


clone accession position
1 MX220a06_r BP090175 1 502
2 MX047e06_r BP087943 109 556




Chlamydomonas reinhardtii
Kazusa DNA Research Institute