KCC003369A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC003369A_C01 KCC003369A_c01
tataatcttctgctgatacttgtaactatttcaacgcaaagctttaaaggacatcaaCGG
GGGTCTTTCGGGGGGCAATTGCGACCGCAAGGCTGCCAGCCGGCTTGGAAGCCTTTGCAT
CGTTGCCAGCCGGCTTGGCGACTGAAGGGCAACCAGTTATACATAGGACTGGTGGGCAGC
GGCTCCAGCGGCGCACAGCGATGGCGTCGGGGTTCGGACTATTCTTTGTGGGGCACACGG
TGCCCATTACACACGACAACCTGACGCAAGTGGACCCCACGCACTGGGTGCTGGACGCCT
CGGTCATTCCAAACTACGCGGCTATGCGCGAGGTGGCGCTGTTCCTGCTGCCCGGCAGTG
TGCTGGACCCCAACGCGGCACTGGGGCTGTACGTGCGCGCTGGCAACGCCGAGTGGGCCT
ACCGCGGCTGTGTGCACAACGCCCAGCCCAGTGCCGTCCTGCCGCT


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC003369A_C01 KCC003369A_c01
         (466 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_176782.1| expressed protein [Arabidopsis thaliana] gi|254...    58  5e-08
gb|AAO06975.1| Hypothetical protein [Oryza sativa (japonica cult...    55  4e-07
dbj|BAC92439.1| hypothetical protein [Oryza sativa (japonica cul...    39  0.029
ref|NP_295856.1| conserved hypothetical protein [Deinococcus rad...    39  0.038
emb|CAB95420.1| hypothetical protein [Trypanosoma brucei]              38  0.065

>ref|NP_176782.1| expressed protein [Arabidopsis thaliana] gi|25404581|pir||D96685
           hypothetical protein F15E12.12 [imported] - Arabidopsis
           thaliana gi|12322612|gb|AAG51306.1|AC026480_13
           hypothetical protein [Arabidopsis thaliana]
           gi|33589792|gb|AAQ22662.1| At1g66080 [Arabidopsis
           thaliana]
          Length = 190

 Score = 58.2 bits (139), Expect = 5e-08
 Identities = 33/85 (38%), Positives = 48/85 (55%), Gaps = 2/85 (2%)
 Frame = +3

Query: 213 FGLFFVGHTVPITHDNLTQVDPTHWVLDAS--VIPNYAAMREVALFLLPGSVLDPNAALG 386
           FG+ F   + PI     TQ+D  HWVLD +  V   Y  + E+ +FLL    L P+ AL 
Sbjct: 2   FGVVFPNRSFPIDISTFTQIDTFHWVLDMNHFVGEAYDQISEMCIFLLNNFNLPPDKALA 61

Query: 387 LYVRAGNAEWAYRGCVHNAQPSAVL 461
           +YV++  + + + G V  A+PSAVL
Sbjct: 62  VYVQSPGSAFVFCGAVTLARPSAVL 86

>gb|AAO06975.1| Hypothetical protein [Oryza sativa (japonica cultivar-group)]
          Length = 180

 Score = 55.1 bits (131), Expect = 4e-07
 Identities = 32/87 (36%), Positives = 45/87 (50%), Gaps = 3/87 (3%)
 Frame = +3

Query: 213 FGLFFVGHTVPITHDNLTQVDPTHWVLDASVIPNYAAMREVALFLLP--GSVLDPNAALG 386
           FG+ F  H+ P+      QV P  W LD S +   AA R   +FLLP   + L P  A+ 
Sbjct: 2   FGVVFPDHSFPLDVTAFAQVAPNSWALDLSTLSLAAAPRSAVVFLLPAAAAALPPGKAVA 61

Query: 387 LYVR-AGNAEWAYRGCVHNAQPSAVLP 464
           +Y + A N  +A+ G +   +PSA LP
Sbjct: 62  VYFQPAANRPFAFLGALGPGRPSASLP 88

>dbj|BAC92439.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
           gi|35215083|dbj|BAC92440.1| hypothetical protein [Oryza
           sativa (japonica cultivar-group)]
          Length = 176

 Score = 38.9 bits (89), Expect = 0.029
 Identities = 20/45 (44%), Positives = 22/45 (48%)
 Frame = -2

Query: 462 AGRHWAGRCAHSRGRPTRRCQRARTAPVPRWGPAHCRAAGTAPPR 328
           AG  W  R   +RGRP R  +R R AP PRW P     A    PR
Sbjct: 97  AGPTWQPR-GRARGRPRRHGRRERRAPAPRWSPPATTGAAERRPR 140

>ref|NP_295856.1| conserved hypothetical protein [Deinococcus radiodurans]
           gi|7471338|pir||B75310 conserved hypothetical protein -
           Deinococcus radiodurans  (strain R1)
           gi|6459930|gb|AAF11681.1|AE002048_1 conserved
           hypothetical protein [Deinococcus radiodurans]
          Length = 528

 Score = 38.5 bits (88), Expect = 0.038
 Identities = 32/91 (35%), Positives = 40/91 (43%), Gaps = 6/91 (6%)
 Frame = -2

Query: 420 RPTRRCQRA----RTAPVPRWGPAH--CRAAGTAPPRA*PRSLE*PRRPAPSAWGPLASG 259
           R T+RC+ A    RT+P  R GP+   CRAA    PR  PR     R   P+   P A+ 
Sbjct: 403 RATKRCRTATGCGRTSP--RCGPSSGSCRAATRRSPRTSPRRARASRASRPTIPAPAANS 460

Query: 258 CRV*WAPCAPQRIVRTPTPSLCAAGAAAHQS 166
                 P +P R     TP  C   AA+  S
Sbjct: 461 ASA-APPNSPTRKTNWSTPGWCPRSAASTPS 490

>emb|CAB95420.1| hypothetical protein [Trypanosoma brucei]
          Length = 193

 Score = 37.7 bits (86), Expect = 0.065
 Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
 Frame = +3

Query: 270 VDPTHWVLDASVIPNYAAMREVALFLLPGSVLDPNAALGLYV-RAGNAEWAYRGCVHNAQ 446
           V+ T+W++     P       + +FL   ++L+P  ALG+Y+ R  +  +AY G + N  
Sbjct: 27  VEGTNWIVPLGFAPE-----SIVVFLTFPTLLNPGTALGIYLAREDDRAFAYVGHLSNTA 81

Query: 447 PSAVL 461
           PSA+L
Sbjct: 82  PSAIL 86



EST assemble image


clone accession position
1 MXL041c08_r BP095404 1 394
2 MX019h03_r BP086904 58 466




Chlamydomonas reinhardtii
Kazusa DNA Research Institute