KCC003366A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC003366A_C01 KCC003366A_c01
aacacatagatcTAGGCACGAAGCTGCTCGAGACTCAGACGAGGTTCCGCGCAGCCTGTA
TAGCTGGTTCTGACTCGACCCAAATTACAGACTCATAGAAGCACATACAAGCAAAGCATC
AAGTCCTTCGGCGGCGTGCGCTGTCGCTTGCGCACGCCGTAAGCGGCATTCGCGAGAATG
CAAGGGAACGTCGCCAGGATGAACGCTTCTACCTCGCTTCAATCATCTACAGGGCCATGC
GCCTGCGGATTTTCGGGCCGCATGACGCCCCCTCAGCTCTTGCCGAGCATTCGGCGTCGC
AGCGTTGTCGCAGGCTCTACGCAGACGCGCAACTTCAACATGCAGTTTGACCCTAGCAAG
TCAAATATCCCTCTGGAGTACAACTTCTCACAGCCACTTGAAGTTAGCCCGGCCCCCGCC
AACTGGCCAGAGGGCGCACCCGACGGGGTCATGGACGCGGGCCCCTAC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC003366A_C01 KCC003366A_c01
         (468 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_631763.1| hypothetical protein SC8D11.16 [Streptomyces co...    35  0.43
pir||T13939 myosin V - fruit fly (Drosophila melanogaster) gi|40...    33  1.2
ref|NP_477186.1| dilute class unconventional myosin CG2146-PA [D...    33  1.2
ref|NP_724569.1| dilute class unconventional myosin CG2146-PC [D...    33  1.2
gb|AAQ22472.1| RE30195p [Drosophila melanogaster]                      33  1.2

>ref|NP_631763.1| hypothetical protein SC8D11.16 [Streptomyces coelicolor A3(2)]
           gi|12311717|emb|CAC22733.1| hypothetical protein
           SC8D11.16 [Streptomyces coelicolor A3(2)]
          Length = 260

 Score = 35.0 bits (79), Expect = 0.43
 Identities = 36/117 (30%), Positives = 48/117 (40%), Gaps = 3/117 (2%)
 Frame = +2

Query: 125 PSAACAVACARRKRHSR--ECKGTSPG*TLLPRFN-HLQGHAPADFRAA*RPLSSCRAFG 295
           PSA    AC RR    R  + +G   G    PR      G  P       RP S+ RA  
Sbjct: 5   PSAVAPAACVRRCSWCRTDQARGDPAGLPRHPRSTLPSTGGTPMSLH---RPASALRALT 61

Query: 296 VAALSQALRRRATSTCSLTLASQISLWSTTSHSHLKLARPPPTGQRAHPTGSWTRAP 466
           VAAL+      A +  +    +  +L +T +   L  ++ PP     HPT SWT  P
Sbjct: 62  VAALAAGAVLTAPAADAAPKEAAPALSATPAF--LSASQLPP-----HPTSSWTAGP 111

>pir||T13939 myosin V - fruit fly (Drosophila melanogaster)
            gi|4092802|gb|AAC99496.1| myosin V [Drosophila
            melanogaster]
          Length = 1792

 Score = 33.5 bits (75), Expect = 1.2
 Identities = 22/69 (31%), Positives = 36/69 (51%)
 Frame = +3

Query: 111  AKHQVLRRRALSLAHAVSGIRENARERRQDERFYLASIIYRAMRLRIFGPHDAPSALAEH 290
            A+  + RRR L L H++SGI+  AR      +F+     YRA++++ F       ALA  
Sbjct: 833  ARGWLCRRRYLRLRHSISGIQTYARGMLARNKFHAMRDHYRAVQIQRF----VRGALARR 888

Query: 291  SASQRCRRL 317
            +  +R R +
Sbjct: 889  AYQKRRRNI 897

>ref|NP_477186.1| dilute class unconventional myosin CG2146-PA [Drosophila
            melanogaster] gi|10727782|gb|AAF59241.2| CG2146-PA
            [Drosophila melanogaster]
          Length = 1792

 Score = 33.5 bits (75), Expect = 1.2
 Identities = 22/69 (31%), Positives = 36/69 (51%)
 Frame = +3

Query: 111  AKHQVLRRRALSLAHAVSGIRENARERRQDERFYLASIIYRAMRLRIFGPHDAPSALAEH 290
            A+  + RRR L L H++SGI+  AR      +F+     YRA++++ F       ALA  
Sbjct: 833  ARGWLCRRRYLRLRHSISGIQTYARGMLARNKFHAMRDHYRAVQIQRF----VRGALARR 888

Query: 291  SASQRCRRL 317
            +  +R R +
Sbjct: 889  AYQKRRRNI 897

>ref|NP_724569.1| dilute class unconventional myosin CG2146-PC [Drosophila
            melanogaster] gi|21627786|gb|AAM68902.1| CG2146-PC
            [Drosophila melanogaster]
          Length = 1800

 Score = 33.5 bits (75), Expect = 1.2
 Identities = 22/69 (31%), Positives = 36/69 (51%)
 Frame = +3

Query: 111  AKHQVLRRRALSLAHAVSGIRENARERRQDERFYLASIIYRAMRLRIFGPHDAPSALAEH 290
            A+  + RRR L L H++SGI+  AR      +F+     YRA++++ F       ALA  
Sbjct: 841  ARGWLCRRRYLRLRHSISGIQTYARGMLARNKFHAMRDHYRAVQIQRF----VRGALARR 896

Query: 291  SASQRCRRL 317
            +  +R R +
Sbjct: 897  AYQKRRRNI 905

>gb|AAQ22472.1| RE30195p [Drosophila melanogaster]
          Length = 1401

 Score = 33.5 bits (75), Expect = 1.2
 Identities = 22/69 (31%), Positives = 36/69 (51%)
 Frame = +3

Query: 111  AKHQVLRRRALSLAHAVSGIRENARERRQDERFYLASIIYRAMRLRIFGPHDAPSALAEH 290
            A+  + RRR L L H++SGI+  AR      +F+     YRA++++ F       ALA  
Sbjct: 841  ARGWLCRRRYLRLRHSISGIQTYARGMLARNKFHAMRDHYRAVQIQRF----VRGALARR 896

Query: 291  SASQRCRRL 317
            +  +R R +
Sbjct: 897  AYQKRRRNI 905



EST assemble image


clone accession position
1 MX201h11_r BP089165 1 338
2 MX016b07_r BP086759 13 468




Chlamydomonas reinhardtii
Kazusa DNA Research Institute