KCC003365A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC003365A_C01 KCC003365A_c01
GTTAAAATCACAATCGCATTCTGCAGAAAGCGTATTCTTAAAATGAAGTAGCTGTCCCTC
TGGGGCCCCAAGTCGTTTAGAAGCACAATTGCAGACGCATCAAAATGATAGGCTCTTCAG
GATGGCTGAACGACCAGCGCAAGATCGGGCTGGGCCTGACGGCGTTGGGCATCCTGTTCA
CCATACTCGGCATGATTCTGCTCTTCGACCGCGGGCTTATCGCCATGGGCAACCTGTTGT
TCCTCGCCGGGTTGACGACGACCATTGGCTTCCACTCCACCGTTAGCTTCTTTATGAAAA
AGAAAAACCGCAAGGGCTCGGCGTTCTACCTGGGCGGCTGCGCAGTAGTAGTGTACGGCT
GGACCGTCATAGGGCTGATCCTCGAAGCATACGGCTTCTGGTTGCTG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC003365A_C01 KCC003365A_c01
         (407 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAF26123.1|AC012328_26 unknown protein [Arabidopsis thaliana]      114  2e-25
ref|NP_186968.2| expressed protein [Arabidopsis thaliana]             114  2e-25
ref|NP_190511.1| expressed protein [Arabidopsis thaliana] gi|152...   114  2e-25
gb|AAG52183.1|AC012329_10 unknown protein; 50647-51606 [Arabidop...   114  2e-25
ref|NP_057156.1| CGI-141 protein [Homo sapiens] gi|20534680|sp|Q...   106  7e-23

>gb|AAF26123.1|AC012328_26 unknown protein [Arabidopsis thaliana]
          Length = 122

 Score =  114 bits (286), Expect = 2e-25
 Identities = 52/94 (55%), Positives = 72/94 (76%)
 Frame = +3

Query: 126 LNDQRKIGLGLTALGILFTILGMILLFDRGLIAMGNLLFLAGLTTTIGFHSTVSFFMKKK 305
           +ND +KIGLGLT  G+ FT LG+I +FD+GLIAMGN+LFLAG+T TIG +  + FF K++
Sbjct: 6   MNDLKKIGLGLTGFGVFFTFLGVIFVFDKGLIAMGNILFLAGVTLTIGINPAIQFFTKRQ 65

Query: 306 NRKGSAFYLGGCAVVVYGWTVIGLILEAYGFWLL 407
           N KG+  +  G  +VV+GW + GL+LE+YGF +L
Sbjct: 66  NFKGTISFGLGFLLVVFGWPIFGLLLESYGFLVL 99

>ref|NP_186968.2| expressed protein [Arabidopsis thaliana]
          Length = 140

 Score =  114 bits (286), Expect = 2e-25
 Identities = 52/94 (55%), Positives = 72/94 (76%)
 Frame = +3

Query: 126 LNDQRKIGLGLTALGILFTILGMILLFDRGLIAMGNLLFLAGLTTTIGFHSTVSFFMKKK 305
           +ND +KIGLGLT  G+ FT LG+I +FD+GLIAMGN+LFLAG+T TIG +  + FF K++
Sbjct: 6   MNDLKKIGLGLTGFGVFFTFLGVIFVFDKGLIAMGNILFLAGVTLTIGINPAIQFFTKRQ 65

Query: 306 NRKGSAFYLGGCAVVVYGWTVIGLILEAYGFWLL 407
           N KG+  +  G  +VV+GW + GL+LE+YGF +L
Sbjct: 66  NFKGTISFGLGFLLVVFGWPIFGLLLESYGFLVL 99

>ref|NP_190511.1| expressed protein [Arabidopsis thaliana]
           gi|15240976|ref|NP_195763.1| expressed protein
           [Arabidopsis thaliana] gi|11280627|pir||T46220
           hypothetical protein T9C5.20 - Arabidopsis thaliana
           gi|6561943|emb|CAB62447.1| putative protein [Arabidopsis
           thaliana] gi|7320721|emb|CAB81926.1| putative protein
           [Arabidopsis thaliana] gi|15028037|gb|AAK76549.1|
           unknown protein [Arabidopsis thaliana]
           gi|17065530|gb|AAL32919.1| Unknown protein [Arabidopsis
           thaliana] gi|20258895|gb|AAM14141.1| unknown protein
           [Arabidopsis thaliana] gi|21537222|gb|AAM61563.1|
           unknown [Arabidopsis thaliana]
           gi|30102848|gb|AAP21342.1| At3g49420 [Arabidopsis
           thaliana]
          Length = 140

 Score =  114 bits (286), Expect = 2e-25
 Identities = 48/94 (51%), Positives = 75/94 (79%)
 Frame = +3

Query: 126 LNDQRKIGLGLTALGILFTILGMILLFDRGLIAMGNLLFLAGLTTTIGFHSTVSFFMKKK 305
           +ND++KIGLGLT  G+ F+ LG++ +FD+GL+AMGN+LF++G++ TIGF ST+ FFMK++
Sbjct: 6   MNDRKKIGLGLTGFGVFFSFLGIVFVFDKGLLAMGNILFISGVSLTIGFKSTMQFFMKRQ 65

Query: 306 NRKGSAFYLGGCAVVVYGWTVIGLILEAYGFWLL 407
           N KG+  +  G   V+ GW ++G++LE YGF++L
Sbjct: 66  NYKGTISFGVGFFFVIIGWPILGMMLETYGFFVL 99

>gb|AAG52183.1|AC012329_10 unknown protein; 50647-51606 [Arabidopsis thaliana]
          Length = 141

 Score =  114 bits (286), Expect = 2e-25
 Identities = 48/94 (51%), Positives = 75/94 (79%)
 Frame = +3

Query: 126 LNDQRKIGLGLTALGILFTILGMILLFDRGLIAMGNLLFLAGLTTTIGFHSTVSFFMKKK 305
           +ND++KIGLGLT  G+ F+ LG++ +FD+GL+AMGN+LF++G++ TIGF ST+ FFMK++
Sbjct: 6   MNDRKKIGLGLTGFGVFFSFLGIVFVFDKGLLAMGNILFISGVSLTIGFKSTMQFFMKRQ 65

Query: 306 NRKGSAFYLGGCAVVVYGWTVIGLILEAYGFWLL 407
           N KG+  +  G   V+ GW ++G++LE YGF++L
Sbjct: 66  NYKGTISFGVGFFFVIIGWPILGMMLETYGFFVL 99

>ref|NP_057156.1| CGI-141 protein [Homo sapiens] gi|20534680|sp|Q9Y3E0|C141_HUMAN
           Hypothetical protein CGI-141 (HDCMA39P)
           gi|11280626|pir||T46908 hypothetical protein
           DKFZp761G2423.1 - human
           gi|4929751|gb|AAD34136.1|AF151899_1 CGI-141 protein
           [Homo sapiens] gi|7018430|emb|CAB66506.1| hypothetical
           protein [Homo sapiens] gi|15214653|gb|AAH12455.1|
           CGI-141 protein [Homo sapiens]
           gi|31455495|dbj|BAC77373.1| putative NFkB activating
           protein [Homo sapiens] gi|37183068|gb|AAQ89334.1|
           ISLT432 [Homo sapiens]
          Length = 138

 Score =  106 bits (265), Expect = 7e-23
 Identities = 49/94 (52%), Positives = 64/94 (67%)
 Frame = +3

Query: 126 LNDQRKIGLGLTALGILFTILGMILLFDRGLIAMGNLLFLAGLTTTIGFHSTVSFFMKKK 305
           L D +KIG+GLT  G+ F   GMIL FD+ L+A+GN+LF+AGL   IG   T  FF +K 
Sbjct: 4   LTDTQKIGMGLTGFGVFFLFFGMILFFDKALLAIGNVLFVAGLAFVIGLERTFRFFFQKH 63

Query: 306 NRKGSAFYLGGCAVVVYGWTVIGLILEAYGFWLL 407
             K + F+LGG  VV+ GW +IG+I E YGF+LL
Sbjct: 64  KMKATGFFLGGVFVVLIGWPLIGMIFEIYGFFLL 97



EST assemble image


clone accession position
1 MX014f04_r BP086698 1 407
2 MX016c02_r BP086763 1 380




Chlamydomonas reinhardtii
Kazusa DNA Research Institute