KCC003364A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC003364A_C01 KCC003364A_c01
caacaagaagaagcagcgcagcgtgctgaaggagctcatccgcgccatccagcaggagtc
gtacgagtactcggacccagTGACCCAGTTCCTGGAGTGCGTGTTCGTGCACTACGACTT
CGACGGCGCCCAGCAGAAGCTGAAGGAGTGCGAGGCGGTGCTGGACAACGATTTCTTCCT
GGCGGCCTACAAGGACGAGTTCATTGAGAACGCGCGCCTGTTCATCTTCGAGACGTACTG
CCGGATACACCAGTCCATCTCCATTGCGCTGCTGGCGGAGCGGCTGGGCATGGACCAGGA
GGCGGCGGAGAAGTGGATTGCCAACCTCATCCTCAACGCCAAGCTGAACGCCAAGATTGA
CTCCAAGTCGGGnGACGGTGGTGACTGGGCACGCCAGTCCGCAGTCCGTGCACGAGCAGC
TGGTGGACAAGGCCAAGATGCTGTCCGTGCG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC003364A_C01 KCC003364A_c01
         (451 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAH45079.1| similar to eukaryotic translation initiation fact...   177  3e-44
ref|XP_128217.1| eukaryotic translation initiation factor 3, sub...   176  6e-44
pir||I75615 mammary tumor integration site 6 oncogene protein - ...   176  6e-44
ref|XP_216911.2| similar to Eukaryotic translation initiation fa...   176  6e-44
ref|NP_001559.1| murine mammary tumor integration site 6 (oncoge...   176  6e-44

>gb|AAH45079.1| similar to eukaryotic translation initiation factor [Xenopus
           laevis]
          Length = 423

 Score =  177 bits (449), Expect = 3e-44
 Identities = 81/122 (66%), Positives = 106/122 (86%)
 Frame = +2

Query: 8   KKQRSVLKELIRAIQQESYEYSDPVTQFLECVFVHYDFDGAQQKLKECEAVLDNDFFLAA 187
           +K+R VLK+L++ IQQESY Y DP+T+F+EC++V++DFDGAQ+KL+ECE+VL NDFFL A
Sbjct: 246 RKRRQVLKDLVKVIQQESYTYKDPITEFVECLYVNFDFDGAQKKLRECESVLVNDFFLVA 305

Query: 188 YKDEFIENARLFIFETYCRIHQSISIALLAERLGMDQEAAEKWIANLILNAKLNAKIDSK 367
             ++FIENARLFIFET+CRIHQ ISI++LA++L M  E AE+WI NLI NA+L+AKIDSK
Sbjct: 306 CLEDFIENARLFIFETFCRIHQCISISMLADKLNMTPEEAERWIVNLIRNARLDAKIDSK 365

Query: 368 SG 373
            G
Sbjct: 366 LG 367

>ref|XP_128217.1| eukaryotic translation initiation factor 3, subunit 6 [Mus
           musculus]
          Length = 410

 Score =  176 bits (446), Expect = 6e-44
 Identities = 81/122 (66%), Positives = 105/122 (85%)
 Frame = +2

Query: 8   KKQRSVLKELIRAIQQESYEYSDPVTQFLECVFVHYDFDGAQQKLKECEAVLDNDFFLAA 187
           +K+R VLK+L++ IQQESY Y DP+T+F+EC++V++DFDGAQ+KL+ECE+VL NDFFL A
Sbjct: 233 RKRRQVLKDLVKVIQQESYTYKDPITEFVECLYVNFDFDGAQKKLRECESVLVNDFFLVA 292

Query: 188 YKDEFIENARLFIFETYCRIHQSISIALLAERLGMDQEAAEKWIANLILNAKLNAKIDSK 367
             ++FIENARLFIFET+CRIHQ ISI +LA++L M  E AE+WI NLI NA+L+AKIDSK
Sbjct: 293 CLEDFIENARLFIFETFCRIHQCISINMLADKLNMTPEEAERWIVNLIRNARLDAKIDSK 352

Query: 368 SG 373
            G
Sbjct: 353 LG 354

>pir||I75615 mammary tumor integration site 6 oncogene protein - mouse
           gi|13543583|gb|AAH05944.1| EIF3S6 protein [Homo sapiens]
          Length = 396

 Score =  176 bits (446), Expect = 6e-44
 Identities = 81/122 (66%), Positives = 105/122 (85%)
 Frame = +2

Query: 8   KKQRSVLKELIRAIQQESYEYSDPVTQFLECVFVHYDFDGAQQKLKECEAVLDNDFFLAA 187
           +K+R VLK+L++ IQQESY Y DP+T+F+EC++V++DFDGAQ+KL+ECE+VL NDFFL A
Sbjct: 219 RKRRQVLKDLVKVIQQESYTYKDPITEFVECLYVNFDFDGAQKKLRECESVLVNDFFLVA 278

Query: 188 YKDEFIENARLFIFETYCRIHQSISIALLAERLGMDQEAAEKWIANLILNAKLNAKIDSK 367
             ++FIENARLFIFET+CRIHQ ISI +LA++L M  E AE+WI NLI NA+L+AKIDSK
Sbjct: 279 CLEDFIENARLFIFETFCRIHQCISINMLADKLNMTPEEAERWIVNLIRNARLDAKIDSK 338

Query: 368 SG 373
            G
Sbjct: 339 LG 340

>ref|XP_216911.2| similar to Eukaryotic translation initiation factor 3 subunit 6
           (eIF-3 p48) (eIF3e) (Mammary tumor-associated protein
           INT-6) (Viral integration site protein INT-6) [Rattus
           norvegicus]
          Length = 610

 Score =  176 bits (446), Expect = 6e-44
 Identities = 81/122 (66%), Positives = 105/122 (85%)
 Frame = +2

Query: 8   KKQRSVLKELIRAIQQESYEYSDPVTQFLECVFVHYDFDGAQQKLKECEAVLDNDFFLAA 187
           +K+R VLK+L++ IQQESY Y DP+T+F+EC++V++DFDGAQ+KL+ECE+VL NDFFL A
Sbjct: 268 RKRRQVLKDLVKVIQQESYTYKDPITEFVECLYVNFDFDGAQKKLRECESVLVNDFFLVA 327

Query: 188 YKDEFIENARLFIFETYCRIHQSISIALLAERLGMDQEAAEKWIANLILNAKLNAKIDSK 367
             ++FIENARLFIFET+CRIHQ ISI +LA++L M  E AE+WI NLI NA+L+AKIDSK
Sbjct: 328 CLEDFIENARLFIFETFCRIHQCISINMLADKLNMTPEEAERWIVNLIRNARLDAKIDSK 387

Query: 368 SG 373
            G
Sbjct: 388 LG 389

>ref|NP_001559.1| murine mammary tumor integration site 6 (oncogene homolog);
           eukaryotic translation initiation factor 3, subunit 6
           (48kD) [Homo sapiens] gi|2498490|sp|Q64252|IF36_HUMAN
           Eukaryotic translation initiation factor 3 subunit 6
           (eIF-3 p48) (eIF3e) (Mammary tumor-associated protein
           INT-6) (Viral integration site protein INT-6)
           gi|2114363|gb|AAB58251.1| similar to mouse Int-6 [Homo
           sapiens] gi|2351382|gb|AAC51760.1| eIF3-p48 [Homo
           sapiens] gi|2688818|gb|AAB88873.1| Int-6 [Homo sapiens]
           gi|2695701|gb|AAC51919.1| mammary tumor-associated
           protein INT6 [Homo sapiens] gi|12653885|gb|AAH00734.1|
           Murine mammary tumor integration site 6 (oncogene
           homolog) [Homo sapiens] gi|14250042|gb|AAH08419.1|
           Murine mammary tumor integration site 6 (oncogene
           homolog) [Homo sapiens] gi|16876847|gb|AAH16706.1|
           Murine mammary tumor integration site 6 (oncogene
           homolog) [Homo sapiens] gi|18203824|gb|AAH21679.1|
           Murine mammary tumor integration site 6 (oncogene
           homolog) [Homo sapiens] gi|20809814|gb|AAH29177.1|
           Eif3s6 protein [Mus musculus]
          Length = 445

 Score =  176 bits (446), Expect = 6e-44
 Identities = 81/122 (66%), Positives = 105/122 (85%)
 Frame = +2

Query: 8   KKQRSVLKELIRAIQQESYEYSDPVTQFLECVFVHYDFDGAQQKLKECEAVLDNDFFLAA 187
           +K+R VLK+L++ IQQESY Y DP+T+F+EC++V++DFDGAQ+KL+ECE+VL NDFFL A
Sbjct: 268 RKRRQVLKDLVKVIQQESYTYKDPITEFVECLYVNFDFDGAQKKLRECESVLVNDFFLVA 327

Query: 188 YKDEFIENARLFIFETYCRIHQSISIALLAERLGMDQEAAEKWIANLILNAKLNAKIDSK 367
             ++FIENARLFIFET+CRIHQ ISI +LA++L M  E AE+WI NLI NA+L+AKIDSK
Sbjct: 328 CLEDFIENARLFIFETFCRIHQCISINMLADKLNMTPEEAERWIVNLIRNARLDAKIDSK 387

Query: 368 SG 373
            G
Sbjct: 388 LG 389



EST assemble image


clone accession position
1 MX013h03_r BP086661 1 451
2 MX217d09_r BP090014 92 394




Chlamydomonas reinhardtii
Kazusa DNA Research Institute