KCC003355A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC003355A_C01 KCC003355A_c01
TGGCGTCGCTGCCGTGTTACTCGGAGGACAACGTGGACAAGCAGCGCGGGCGTGGCGTGT
TCGAGCGCTCCATCGAGGGGCTCAAACTGCTGAACGCGGCGGGCTACGGCGTGGAGGGCT
CGGGGCTGCAGCTGGACCTGGTGTATAACCCGGGCGGCGCCTTTCTGGCCCCCAGTCAGT
CCAAGCTGCAGGAGGCCTACAAGAGCGAGCTGGGCAGCGCTTACGGAATCGGCTTCAACC
GCCTATTGGCGCTCAACAACATGCCCATCAAGCGCTTCGCCGACTTCCTCACACGCAAGG
GCGCGATGAAGGACTACATGGGGCTACTGGTGAACAACTTCAACGCCGGGGCGGCGGAGT
ACCTCATGTGCAG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC003355A_C01 KCC003355A_c01
         (373 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_923833.1| hypothetical protein gll0887 [Gloeobacter viola...   134  2e-31
ref|NP_867438.1| conserved hypothetical protein-putative Fe-S ox...   132  1e-30
ref|ZP_00079786.1| COG0535: Predicted Fe-S oxidoreductases [Geob...   132  2e-30
ref|ZP_00065045.1| COG0535: Predicted Fe-S oxidoreductases [Micr...   130  6e-30
ref|ZP_00045086.1| COG0535: Predicted Fe-S oxidoreductases [Magn...   127  3e-29

>ref|NP_923833.1| hypothetical protein gll0887 [Gloeobacter violaceus]
           gi|35211450|dbj|BAC88828.1| gll0887 [Gloeobacter
           violaceus]
          Length = 316

 Score =  134 bits (338), Expect = 2e-31
 Identities = 68/123 (55%), Positives = 80/123 (64%)
 Frame = +3

Query: 3   ASLPCYSEDNVDKQRGRGVFERSIEGLKLLNAAGYGVEGSGLQLDLVYNPGGAFLAPSQS 182
           ASLPCYS DNVDKQRG  VFE+SI  L+ LN  GYG    GL L+LVYNP GA L P+Q+
Sbjct: 125 ASLPCYSPDNVDKQRGNRVFEQSIAALRQLNQLGYGQPAGGLLLNLVYNPVGAHLPPAQT 184

Query: 183 KLQEAYKSELGSAYGIGFNRLLALNNMPIKRFADFLTRKGAMKDYMGLLVNNFNAGAAEY 362
            L+  Y+ EL   YGI FNRL  + NMPI+RF  +L R G +  Y  LL +NFN      
Sbjct: 185 SLEARYRQELSEHYGIVFNRLFTITNMPIRRFRHYLQRMGQLDTYNRLLSDNFNPSTLVG 244

Query: 363 LMC 371
           LMC
Sbjct: 245 LMC 247

>ref|NP_867438.1| conserved hypothetical protein-putative Fe-S oxidoreductases
           [Pirellula sp.] gi|32444982|emb|CAD74984.1| conserved
           hypothetical protein-putative Fe-S oxidoreductases
           [Pirellula sp.]
          Length = 332

 Score =  132 bits (332), Expect = 1e-30
 Identities = 65/123 (52%), Positives = 84/123 (67%)
 Frame = +3

Query: 3   ASLPCYSEDNVDKQRGRGVFERSIEGLKLLNAAGYGVEGSGLQLDLVYNPGGAFLAPSQS 182
           ASLPCY EDNVD QRG GVF RSI+GL  LN  GY    +  +LDLVYNP G  L P Q+
Sbjct: 143 ASLPCYLEDNVDGQRGGGVFGRSIDGLLKLNELGYRRGSATHRLDLVYNPTGPSLPPDQA 202

Query: 183 KLQEAYKSELGSAYGIGFNRLLALNNMPIKRFADFLTRKGAMKDYMGLLVNNFNAGAAEY 362
           KL+  Y+ EL + YGI F  LL + N+PI+R+A +L ++G + DY+ LL +NFN  A + 
Sbjct: 203 KLEADYRRELSARYGIEFGSLLTITNIPIRRYAQYLQKRGLLDDYLRLLSDNFNPNATDE 262

Query: 363 LMC 371
           +MC
Sbjct: 263 VMC 265

>ref|ZP_00079786.1| COG0535: Predicted Fe-S oxidoreductases [Geobacter metallireducens]
          Length = 318

 Score =  132 bits (331), Expect = 2e-30
 Identities = 66/123 (53%), Positives = 84/123 (67%)
 Frame = +3

Query: 3   ASLPCYSEDNVDKQRGRGVFERSIEGLKLLNAAGYGVEGSGLQLDLVYNPGGAFLAPSQS 182
           ASLPCY E+NV++QRG GVF RSIE L++LN  GYG     L+L+LVYNPGG  +  SQ 
Sbjct: 129 ASLPCYQEENVERQRGPGVFARSIEALRILNGLGYG---GTLELNLVYNPGGPLIPGSQR 185

Query: 183 KLQEAYKSELGSAYGIGFNRLLALNNMPIKRFADFLTRKGAMKDYMGLLVNNFNAGAAEY 362
           +L+EAYK EL + YGI FN L  + N PI RF ++L  KGA + Y+ +L   FN  AA  
Sbjct: 186 ELEEAYKIELLTRYGIRFNNLYTIANAPIGRFREYLEAKGAYERYLAMLATRFNPEAARN 245

Query: 363 LMC 371
           +MC
Sbjct: 246 IMC 248

>ref|ZP_00065045.1| COG0535: Predicted Fe-S oxidoreductases [Microbulbifer degradans
           2-40]
          Length = 329

 Score =  130 bits (326), Expect = 6e-30
 Identities = 66/123 (53%), Positives = 80/123 (64%)
 Frame = +3

Query: 3   ASLPCYSEDNVDKQRGRGVFERSIEGLKLLNAAGYGVEGSGLQLDLVYNPGGAFLAPSQS 182
           ASLPCYSE NV++QRG+GVF  SI  L+ LN  GYG     L L+LVYNP G FL PSQ 
Sbjct: 128 ASLPCYSEKNVNEQRGKGVFGSSITALQKLNKLGYGTS-ENLSLNLVYNPNGPFLPPSQQ 186

Query: 183 KLQEAYKSELGSAYGIGFNRLLALNNMPIKRFADFLTRKGAMKDYMGLLVNNFNAGAAEY 362
            LQ+ YK +L   +GI FN LL + NMPI RF   L  KG  +DY+ LL +NF+A     
Sbjct: 187 ALQQDYKQKLAQDFGISFNELLTITNMPISRFGSMLLSKGLYEDYLQLLKDNFSAANLAG 246

Query: 363 LMC 371
           +MC
Sbjct: 247 VMC 249

>ref|ZP_00045086.1| COG0535: Predicted Fe-S oxidoreductases [Magnetococcus sp. MC-1]
          Length = 318

 Score =  127 bits (320), Expect = 3e-29
 Identities = 66/122 (54%), Positives = 82/122 (67%)
 Frame = +3

Query: 6   SLPCYSEDNVDKQRGRGVFERSIEGLKLLNAAGYGVEGSGLQLDLVYNPGGAFLAPSQSK 185
           S+PCY ++NVD+QRG GV++ SI  L+ LN  GYGV G G+ L+LVYNPGGA L P QS 
Sbjct: 130 SMPCYVQENVDQQRGDGVYQASIAALQRLNQLGYGVAG-GVPLNLVYNPGGAHLPPPQSS 188

Query: 186 LQEAYKSELGSAYGIGFNRLLALNNMPIKRFADFLTRKGAMKDYMGLLVNNFNAGAAEYL 365
           L+EAYK  +   YGI F++LL L NMPI RF   L R+G  + Y GLL  +FN      L
Sbjct: 189 LEEAYKKAMWQQYGITFDQLLTLTNMPIGRFRADLRREGQEQAYWGLLQASFNPATVAGL 248

Query: 366 MC 371
           MC
Sbjct: 249 MC 250



EST assemble image


clone accession position
1 MX049f04_r BP088020 1 460
2 MX004a11_r BP086206 118 490




Chlamydomonas reinhardtii
Kazusa DNA Research Institute