KCC003351A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC003351A_C01 KCC003351A_c01
ACTTATTCTTGCCTCAGTACCTTACACGCACGCTCTATCAACTTGATTACACCATCGGCC
GAGGCTCTTCTACATAGGCAACCCCAAACTGCGCTGACCTGGGTTTCCACTACTTAGCCG
GCTGTTAAAGAGAGGCAGGAAGGATGCAGGAGGAGTCTGTGTATGCACTGATTCCTCAGC
CGCAGGAGGTGCCCCAGCGGCCTGCGATGCACACCTCGAAGTTTGGAGGCAAGACGCATC
CTGCCCAGTTTGACTTTGGACAAAACAAGGTTCAACCGCACGCGACCATGGGGCGACCAG
ATGGAGCGAACGGGCCGGCGTTCCTCCACGCACACGAGAAGGAGCCCAAGCTACCATCTC
CCGGCCCGCCCAGCAACCCCAAGCAAAAGATCCGGCCACCGGTGCCGGACAAAGAGGAGA
AGCCCACTATGGGCCTCAGCAGCAACAAGAACTTCATCAC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC003351A_C01 KCC003351A_c01
         (460 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAH49447.1| Similar to hypothetical protein MGC26778 [Danio r...    60  9e-09
ref|NP_659447.1| hypothetical protein MGC26778 [Homo sapiens] gi...    44  7e-04
ref|XP_283704.1| RIKEN cDNA 4933434I06 [Mus musculus]                  44  9e-04
gb|AAM47576.1| choriogenin H [Oryzias latipes]                         39  0.028
dbj|BAA13994.1| choriogenin H [Oryzias latipes]                        39  0.028

>gb|AAH49447.1| Similar to hypothetical protein MGC26778 [Danio rerio]
          Length = 299

 Score = 60.5 bits (145), Expect = 9e-09
 Identities = 38/106 (35%), Positives = 56/106 (51%), Gaps = 4/106 (3%)
 Frame = +3

Query: 153 ESVYALIPQPQEVPQRPAMHTSKFGGKTHPAQFDFGQNKVQPHATMG--RPDGANGPAFL 326
           ES+Y LIP+ +E   +   + SKF  +    +    Q+   P+ +MG  + D      +L
Sbjct: 49  ESIYNLIPREEEKTMKAPRYMSKFREQVKLEK----QSNKAPNKSMGPAKVDVPLPQKYL 104

Query: 327 HAHEKEPKLPSPGPPSNPKQKI--RPPVPDKEEKPTMGLSSNKNFI 458
             H KEPKLP   P      ++  +PPVP + +KP MGL +NKNFI
Sbjct: 105 LKHSKEPKLPEKKPFKYEDDELHYKPPVPTRTDKPLMGLHTNKNFI 150

>ref|NP_659447.1| hypothetical protein MGC26778 [Homo sapiens]
           gi|20072881|gb|AAH26165.1| MGC26778 protein [Homo
           sapiens] gi|21754205|dbj|BAC04477.1| unnamed protein
           product [Homo sapiens]
          Length = 256

 Score = 44.3 bits (103), Expect = 7e-04
 Identities = 37/107 (34%), Positives = 47/107 (43%), Gaps = 5/107 (4%)
 Frame = +3

Query: 153 ESVYALIPQPQEVPQRPAMHTSKFGGKTHPAQFDFGQNKVQPHATMGRPDGANGPA---F 323
           E +Y LIP   + P +P  + S F         D  Q       TMG P     P+   F
Sbjct: 8   ECIYNLIPSDLKEPPQPPRYISIFKATVK----DDMQKAKTAMKTMG-PAKVEVPSPKDF 62

Query: 324 LHAHEKEPKLPSPGPPSNPKQKI--RPPVPDKEEKPTMGLSSNKNFI 458
           L  H KE  LP   P  N  + +  +P VP K + P MG+ S KNFI
Sbjct: 63  LKKHSKEKTLP---PKKNFDRNVPKKPAVPLKTDHPVMGIQSGKNFI 106

>ref|XP_283704.1| RIKEN cDNA 4933434I06 [Mus musculus]
          Length = 255

 Score = 43.9 bits (102), Expect = 9e-04
 Identities = 33/104 (31%), Positives = 46/104 (43%), Gaps = 2/104 (1%)
 Frame = +3

Query: 153 ESVYALIPQPQEVPQRPAMHTSKFGG--KTHPAQFDFGQNKVQPHATMGRPDGANGPAFL 326
           ES+Y LIP   + P +   +TS F    K    +F      + P     + +  +   FL
Sbjct: 8   ESIYNLIPSDLKEPPQHPRYTSLFRATIKNDMKKFKTAMKTMGP----AKVEIPSPKDFL 63

Query: 327 HAHEKEPKLPSPGPPSNPKQKIRPPVPDKEEKPTMGLSSNKNFI 458
             H KE  LP P    N     +P VP + + P MG+ S KNFI
Sbjct: 64  KKHSKEKTLP-PKKKFNRCSPKKPAVPLRTDHPVMGIQSGKNFI 106

>gb|AAM47576.1| choriogenin H [Oryzias latipes]
          Length = 666

 Score = 38.9 bits (89), Expect = 0.028
 Identities = 25/85 (29%), Positives = 35/85 (40%)
 Frame = +3

Query: 171 IPQPQEVPQRPAMHTSKFGGKTHPAQFDFGQNKVQPHATMGRPDGANGPAFLHAHEKEPK 350
           +PQ  +VPQ P          ++P    + QN   P      P   N      ++ + PK
Sbjct: 86  VPQNPQVPQNPQY-------PSYPQNPSYPQNPSYPQYPSNPPTSQNP-----SYPQNPK 133

Query: 351 LPSPGPPSNPKQKIRPPVPDKEEKP 425
           L   G PSNP+Q   P  P K + P
Sbjct: 134 LFQDGKPSNPQQPQVPQYPSKPQPP 158

>dbj|BAA13994.1| choriogenin H [Oryzias latipes]
          Length = 591

 Score = 38.9 bits (89), Expect = 0.028
 Identities = 25/85 (29%), Positives = 35/85 (40%)
 Frame = +3

Query: 171 IPQPQEVPQRPAMHTSKFGGKTHPAQFDFGQNKVQPHATMGRPDGANGPAFLHAHEKEPK 350
           +PQ  +VPQ P          ++P    + QN   P      P   N      ++ + PK
Sbjct: 86  VPQNPQVPQNPQY-------PSYPQNPSYPQNPSYPQYPSNPPTSQNP-----SYPQNPK 133

Query: 351 LPSPGPPSNPKQKIRPPVPDKEEKP 425
           L   G PSNP+Q   P  P K + P
Sbjct: 134 LFQDGKPSNPQQPQVPQYPSKPQPP 158



EST assemble image


clone accession position
1 MX001h09_r BP086101 1 413
2 MX047e09_r BP087945 1 460




Chlamydomonas reinhardtii
Kazusa DNA Research Institute