KCC003345A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC003345A_C01 KCC003345A_c01
gttattctgtgGTCATAACCGCTAAAGGATCTACTCTTGGCGTGTTGTAGAGTCACACGA
GTGGCAGATGTCGCTGCTCCTAGGAAACCAGGGCCTGGGCCACGCCGGACGCCCGTCAAC
ATCGGCAAATGTGAAGCTGCAGCCAAGGCTCCGTGCCATCAGGGCGCGAGTCCAGCAAAC
CGGACGGCGCGTCGAGCATCGGGTCGTCTTTGCACAGGCAGCGCACGACACGGCAGTCAC
GCAGCCGAGTACATCGAGCGCAGCTAAAGGGCTGCCCAAATCATCGGTCTGGGAGATCGA
CTTCTGTTCTCGCCCGCTGCTGGATGAGCGCGGAAAGAAGGTTTGGGAGCTGCTGATTTG
CGACCCTGAGCGCAATTTTGAGTACTCTGAGTACTTTCCGAACAGCAAGATCAACAGCGC
AGAGCTCAAGCGCACCATCGAGCGGATTCTTGCCCAGGCCGGTGCTGAGCGGCCAGAGAA
GGCCCGGTTCTTCAGGAGTCAAATGC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC003345A_C01 KCC003345A_c01
         (506 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

emb|CAE17328.1| Tab2 protein [Chlamydomonas reinhardtii] gi|3323...   292  2e-78
ref|NP_566327.1| expressed protein [Arabidopsis thaliana] gi|664...    94  1e-18
ref|NP_441046.1| hypothetical protein [Synechocystis sp. PCC 680...    81  7e-15
ref|ZP_00112111.1| hypothetical protein [Nostoc punctiforme]           79  4e-14
ref|ZP_00072211.1| hypothetical protein [Trichodesmium erythraeu...    77  1e-13

>emb|CAE17328.1| Tab2 protein [Chlamydomonas reinhardtii]
           gi|33235189|emb|CAE17329.1| Tab2 protein [Chlamydomonas
           reinhardtii]
          Length = 358

 Score =  292 bits (747), Expect = 2e-78
 Identities = 146/146 (100%), Positives = 146/146 (100%)
 Frame = +2

Query: 68  MSLLLGNQGLGHAGRPSTSANVKLQPRLRAIRARVQQTGRRVEHRVVFAQAAHDTAVTQP 247
           MSLLLGNQGLGHAGRPSTSANVKLQPRLRAIRARVQQTGRRVEHRVVFAQAAHDTAVTQP
Sbjct: 1   MSLLLGNQGLGHAGRPSTSANVKLQPRLRAIRARVQQTGRRVEHRVVFAQAAHDTAVTQP 60

Query: 248 STSSAAKGLPKSSVWEIDFCSRPLLDERGKKVWELLICDPERNFEYSEYFPNSKINSAEL 427
           STSSAAKGLPKSSVWEIDFCSRPLLDERGKKVWELLICDPERNFEYSEYFPNSKINSAEL
Sbjct: 61  STSSAAKGLPKSSVWEIDFCSRPLLDERGKKVWELLICDPERNFEYSEYFPNSKINSAEL 120

Query: 428 KRTIERILAQAGAERPEKARFFRSQM 505
           KRTIERILAQAGAERPEKARFFRSQM
Sbjct: 121 KRTIERILAQAGAERPEKARFFRSQM 146

>ref|NP_566327.1| expressed protein [Arabidopsis thaliana]
           gi|6648213|gb|AAF21211.1|AC013483_35 unknown protein
           [Arabidopsis thaliana] gi|18252181|gb|AAL61923.1|
           unknown protein [Arabidopsis thaliana]
           gi|24899681|gb|AAN65055.1| unknown protein [Arabidopsis
           thaliana]
          Length = 374

 Score = 94.0 bits (232), Expect = 1e-18
 Identities = 41/72 (56%), Positives = 51/72 (69%)
 Frame = +2

Query: 290 WEIDFCSRPLLDERGKKVWELLICDPERNFEYSEYFPNSKINSAELKRTIERILAQAGAE 469
           WE+DFCSRP+LD RGKK+WEL++CD   + + ++YFPN+ INS  LK  I  I    G  
Sbjct: 92  WELDFCSRPILDSRGKKIWELVVCDASLSLQVTKYFPNNVINSITLKDAIVTITQDLGVP 151

Query: 470 RPEKARFFRSQM 505
            PEK RFFRSQM
Sbjct: 152 LPEKIRFFRSQM 163

>ref|NP_441046.1| hypothetical protein [Synechocystis sp. PCC 6803]
           gi|7470195|pir||S77168 hypothetical protein sll2002 -
           Synechocystis sp. (strain PCC 6803)
           gi|1652807|dbj|BAA17726.1| ORF_ID:sll2002~hypothetical
           protein [Synechocystis sp. PCC 6803]
          Length = 292

 Score = 81.3 bits (199), Expect = 7e-15
 Identities = 41/80 (51%), Positives = 54/80 (67%), Gaps = 8/80 (10%)
 Frame = +2

Query: 290 WEIDFCSRPLLDERGKKVWELLICD--------PERNFEYSEYFPNSKINSAELKRTIER 445
           WE+DF SRPLLD+  KKVWE+LIC+        P   F YS+Y P+S +NS  L++ IE 
Sbjct: 5   WELDFYSRPLLDDEEKKVWEVLICESPQSVQQLPGDLFRYSQYCPSSTVNSVWLRQAIEA 64

Query: 446 ILAQAGAERPEKARFFRSQM 505
            +A+AG + P+K RFFR QM
Sbjct: 65  AIAEAG-QMPQKIRFFRRQM 83

>ref|ZP_00112111.1| hypothetical protein [Nostoc punctiforme]
          Length = 286

 Score = 78.6 bits (192), Expect = 4e-14
 Identities = 36/82 (43%), Positives = 55/82 (66%), Gaps = 8/82 (9%)
 Frame = +2

Query: 284 SVWEIDFCSRPLLDERGKKVWELLICD--------PERNFEYSEYFPNSKINSAELKRTI 439
           S+WEIDF SRP+LD+  KK+WE+L+C+        P+  F Y++Y P++++NS  L+  +
Sbjct: 3   SIWEIDFYSRPILDDNQKKIWEVLVCESPLDIGTKPDSLFRYAQYCPSTQVNSGWLRTAL 62

Query: 440 ERILAQAGAERPEKARFFRSQM 505
           +  + QAG + P K RFFR QM
Sbjct: 63  QEAITQAG-KAPIKIRFFRRQM 83

>ref|ZP_00072211.1| hypothetical protein [Trichodesmium erythraeum IMS101]
          Length = 286

 Score = 77.0 bits (188), Expect = 1e-13
 Identities = 39/83 (46%), Positives = 55/83 (65%), Gaps = 8/83 (9%)
 Frame = +2

Query: 281 SSVWEIDFCSRPLLDERGKKVWELLICD--------PERNFEYSEYFPNSKINSAELKRT 436
           +++WE+DF SRP+LDER KK+WELLIC          +  + YSE+  + ++NS  L+  
Sbjct: 2   TTIWELDFYSRPILDERQKKLWELLICQSPIGINDTTDSLYRYSEFTNSQEVNSIWLRSA 61

Query: 437 IERILAQAGAERPEKARFFRSQM 505
           IE+ +AQA  E PE+ RFFR QM
Sbjct: 62  IEKAIAQA-PEPPERIRFFRRQM 83



EST assemble image


clone accession position
1 LCL099h09_r AV631790 1 505
2 MXL036h02_r BP095160 12 506




Chlamydomonas reinhardtii
Kazusa DNA Research Institute