Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC003344A_C01 KCC003344A_c01
(524 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_057417.2| splicing coactivator subunit SRm300; RNA bindin... 41 0.011
dbj|BAA83714.1| RNA binding protein [Homo sapiens] 41 0.011
gb|AAF21439.1|AF201422_1 splicing coactivator subunit SRm300 [Ho... 41 0.011
dbj|BAA83713.1| RNA binding protein [Homo sapiens] 41 0.011
ref|XP_234925.2| similar to R31449_3 [Rattus norvegicus] 41 0.011
>ref|NP_057417.2| splicing coactivator subunit SRm300; RNA binding protein; AT-rich
element binding factor [Homo sapiens]
gi|5821153|dbj|BAA83718.1| RNA binding protein [Homo
sapiens]
Length = 2752
Score = 40.8 bits (94), Expect = 0.011
Identities = 48/149 (32%), Positives = 60/149 (40%), Gaps = 2/149 (1%)
Frame = -3
Query: 459 ARSTSLMARSTSARRSMWSGSQRSMLN-RCR*GVSG-SHTTVTSRGDASADTRRCRHHQL 286
+RS RS S +R WS S+ + R R G SH SR A+ R R
Sbjct: 525 SRSPQRRGRSRSPQRPGWSRSRNTQRRGRSRSARRGRSH----SRSPATRGRSRSRTPAR 580
Query: 285 QHQRRKHRVPHLRGQLRIQPRNIGSSAGPECRGLLIRRSRS*PPGCTSAATSKPPARCRR 106
+ + R R + R R S P RG RSRS P + T P R R
Sbjct: 581 RGRSRSRTPARRRSRSRTPTRRRSRSRTPARRG----RSRSRTPARRRSRTRSPVRRRSR 636
Query: 105 SSAGSRRSRTSRCEWDGGRQSARRGSLRA 19
S + +RRS SR R ARRG R+
Sbjct: 637 SRSPARRSGRSR-----SRTPARRGRSRS 660
Score = 37.0 bits (84), Expect = 0.15
Identities = 46/156 (29%), Positives = 60/156 (37%), Gaps = 9/156 (5%)
Frame = -3
Query: 459 ARSTSLMARSTSARRSMWSGSQRSMLNR------CR*GVSGSHTTVTSRGDASADTRRCR 298
+R+T RS SARR + R R G S S T R + TRR
Sbjct: 545 SRNTQRRGRSRSARRGRSHSRSPATRGRSRSRTPARRGRSRSRTPARRRSRSRTPTRRRS 604
Query: 297 HHQL--QHQRRKHRVP-HLRGQLRIQPRNIGSSAGPECRGLLIRRSRS*PPGCTSAATSK 127
+ + R + R P R + R R S P R RSRS P + S+
Sbjct: 605 RSRTPARRGRSRSRTPARRRSRTRSPVRRRSRSRSPARRS---GRSRSRTPARRGRSRSR 661
Query: 126 PPARCRRSSAGSRRSRTSRCEWDGGRQSARRGSLRA 19
PAR RS + + R+ R R ARRG R+
Sbjct: 662 TPARRGRSRSRTPARRSGRSR---SRTPARRGRSRS 694
Score = 36.2 bits (82), Expect = 0.26
Identities = 40/138 (28%), Positives = 57/138 (40%), Gaps = 4/138 (2%)
Frame = -3
Query: 477 ARVLQAARSTSLMARSTSARRSMWSGSQRSMLNRCR*GVSGSHTTVTSRGDASADTRRCR 298
AR +RS + R S R+ G RS + R G S S T S+ R+ +
Sbjct: 675 ARRSGRSRSRTPARRGRSRSRTPRRGRSRSR-SLVRRGRSHSRTPQRRGRSGSSSERKNK 733
Query: 297 HHQLQHQRRKHRVPHLRGQLRIQPRNIGSSAGPECRG---LLIRRSRS*PPGCTSAATSK 127
Q + R + P ++ + RI R S + P + L +RRS S C +
Sbjct: 734 SRTSQRRSRSNSSPEMK-KSRISSRRSRSLSSPRSKAKSRLSLRRSLSGSSPCPKQKSQT 792
Query: 126 PPARCRR-SSAGSRRSRT 76
PP R R SS +SRT
Sbjct: 793 PPRRSRSGSSQPKAKSRT 810
Score = 31.2 bits (69), Expect = 8.4
Identities = 22/87 (25%), Positives = 36/87 (41%)
Frame = -3
Query: 336 SRGDASADTRRCRHHQLQHQRRKHRVPHLRGQLRIQPRNIGSSAGPECRGLLIRRSRS*P 157
S D+S D++ L+ + R P + + R+ PR S + PE ++
Sbjct: 1557 SESDSSPDSKAKTRTPLRQRSRSGSSPEVDSKSRLSPRRSRSGSSPE-----VKDKPRAA 1611
Query: 156 PGCTSAATSKPPARCRRSSAGSRRSRT 76
P S + S P + A RRSR+
Sbjct: 1612 PRAQSGSDSSPEPKAPAPRALPRRSRS 1638
>dbj|BAA83714.1| RNA binding protein [Homo sapiens]
Length = 956
Score = 40.8 bits (94), Expect = 0.011
Identities = 48/149 (32%), Positives = 60/149 (40%), Gaps = 2/149 (1%)
Frame = -3
Query: 459 ARSTSLMARSTSARRSMWSGSQRSMLN-RCR*GVSG-SHTTVTSRGDASADTRRCRHHQL 286
+RS RS S +R WS S+ + R R G SH SR A+ R R
Sbjct: 490 SRSPQRRGRSRSPQRPGWSRSRNTQRRGRSRSARRGRSH----SRSPATRGRSRSRTPAR 545
Query: 285 QHQRRKHRVPHLRGQLRIQPRNIGSSAGPECRGLLIRRSRS*PPGCTSAATSKPPARCRR 106
+ + R R + R R S P RG RSRS P + T P R R
Sbjct: 546 RGRSRSRTPARRRSRSRTPTRRRSRSRTPARRG----RSRSRTPARRRSRTRSPVRRRSR 601
Query: 105 SSAGSRRSRTSRCEWDGGRQSARRGSLRA 19
S + +RRS SR R ARRG R+
Sbjct: 602 SRSPARRSGRSR-----SRTPARRGRSRS 625
Score = 37.0 bits (84), Expect = 0.15
Identities = 46/156 (29%), Positives = 60/156 (37%), Gaps = 9/156 (5%)
Frame = -3
Query: 459 ARSTSLMARSTSARRSMWSGSQRSMLNR------CR*GVSGSHTTVTSRGDASADTRRCR 298
+R+T RS SARR + R R G S S T R + TRR
Sbjct: 510 SRNTQRRGRSRSARRGRSHSRSPATRGRSRSRTPARRGRSRSRTPARRRSRSRTPTRRRS 569
Query: 297 HHQL--QHQRRKHRVP-HLRGQLRIQPRNIGSSAGPECRGLLIRRSRS*PPGCTSAATSK 127
+ + R + R P R + R R S P R RSRS P + S+
Sbjct: 570 RSRTPARRGRSRSRTPARRRSRTRSPVRRRSRSRSPARRS---GRSRSRTPARRGRSRSR 626
Query: 126 PPARCRRSSAGSRRSRTSRCEWDGGRQSARRGSLRA 19
PAR RS + + R+ R R ARRG R+
Sbjct: 627 TPARRGRSRSRTPARRSGRSR---SRTPARRGRSRS 659
Score = 36.2 bits (82), Expect = 0.26
Identities = 40/138 (28%), Positives = 57/138 (40%), Gaps = 4/138 (2%)
Frame = -3
Query: 477 ARVLQAARSTSLMARSTSARRSMWSGSQRSMLNRCR*GVSGSHTTVTSRGDASADTRRCR 298
AR +RS + R S R+ G RS + R G S S T S+ R+ +
Sbjct: 640 ARRSGRSRSRTPARRGRSRSRTPRRGRSRSR-SLVRRGRSHSRTPQRRGRSGSSSERKNK 698
Query: 297 HHQLQHQRRKHRVPHLRGQLRIQPRNIGSSAGPECRG---LLIRRSRS*PPGCTSAATSK 127
Q + R + P ++ + RI R S + P + L +RRS S C +
Sbjct: 699 SRTSQRRSRSNSSPEMK-KSRISSRRSRSLSSPRSKAKSRLSLRRSLSGSSPCPKQKSQT 757
Query: 126 PPARCRR-SSAGSRRSRT 76
PP R R SS +SRT
Sbjct: 758 PPRRSRSGSSQPKAKSRT 775
>gb|AAF21439.1|AF201422_1 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2296
Score = 40.8 bits (94), Expect = 0.011
Identities = 48/149 (32%), Positives = 60/149 (40%), Gaps = 2/149 (1%)
Frame = -3
Query: 459 ARSTSLMARSTSARRSMWSGSQRSMLN-RCR*GVSG-SHTTVTSRGDASADTRRCRHHQL 286
+RS RS S +R WS S+ + R R G SH SR A+ R R
Sbjct: 525 SRSPQRRGRSRSPQRPGWSRSRNTQRRGRSRSARRGRSH----SRSPATRGRSRSRTPAR 580
Query: 285 QHQRRKHRVPHLRGQLRIQPRNIGSSAGPECRGLLIRRSRS*PPGCTSAATSKPPARCRR 106
+ + R R + R R S P RG RSRS P + T P R R
Sbjct: 581 RGRSRSRTPARRRSRSRTPTRRRSRSRTPARRG----RSRSRTPARRRSRTRSPVRRRSR 636
Query: 105 SSAGSRRSRTSRCEWDGGRQSARRGSLRA 19
S + +RRS SR R ARRG R+
Sbjct: 637 SRSPARRSGRSR-----SRTPARRGRSRS 660
Score = 37.0 bits (84), Expect = 0.15
Identities = 46/156 (29%), Positives = 60/156 (37%), Gaps = 9/156 (5%)
Frame = -3
Query: 459 ARSTSLMARSTSARRSMWSGSQRSMLNR------CR*GVSGSHTTVTSRGDASADTRRCR 298
+R+T RS SARR + R R G S S T R + TRR
Sbjct: 545 SRNTQRRGRSRSARRGRSHSRSPATRGRSRSRTPARRGRSRSRTPARRRSRSRTPTRRRS 604
Query: 297 HHQL--QHQRRKHRVP-HLRGQLRIQPRNIGSSAGPECRGLLIRRSRS*PPGCTSAATSK 127
+ + R + R P R + R R S P R RSRS P + S+
Sbjct: 605 RSRTPARRGRSRSRTPARRRSRTRSPVRRRSRSRSPARRS---GRSRSRTPARRGRSRSR 661
Query: 126 PPARCRRSSAGSRRSRTSRCEWDGGRQSARRGSLRA 19
PAR RS + + R+ R R ARRG R+
Sbjct: 662 TPARRGRSRSRTPARRSGRSR---SRTPARRGRSRS 694
Score = 36.2 bits (82), Expect = 0.26
Identities = 40/138 (28%), Positives = 57/138 (40%), Gaps = 4/138 (2%)
Frame = -3
Query: 477 ARVLQAARSTSLMARSTSARRSMWSGSQRSMLNRCR*GVSGSHTTVTSRGDASADTRRCR 298
AR +RS + R S R+ G RS + R G S S T S+ R+ +
Sbjct: 675 ARRSGRSRSRTPARRGRSRSRTPRRGRSRSR-SLVRRGRSHSRTPQRRGRSGSSSERKNK 733
Query: 297 HHQLQHQRRKHRVPHLRGQLRIQPRNIGSSAGPECRG---LLIRRSRS*PPGCTSAATSK 127
Q + R + P ++ + RI R S + P + L +RRS S C +
Sbjct: 734 SRTSQRRSRSNSSPEMK-KSRISSRRSRSLSSPRSKAKSRLSLRRSLSGSSPCPKQKSQT 792
Query: 126 PPARCRR-SSAGSRRSRT 76
PP R R SS +SRT
Sbjct: 793 PPRRSRSGSSQPKAKSRT 810
Score = 31.2 bits (69), Expect = 8.4
Identities = 22/87 (25%), Positives = 36/87 (41%)
Frame = -3
Query: 336 SRGDASADTRRCRHHQLQHQRRKHRVPHLRGQLRIQPRNIGSSAGPECRGLLIRRSRS*P 157
S D+S D++ L+ + R P + + R+ PR S + PE ++
Sbjct: 1557 SESDSSPDSKAKTRTPLRQRSRSGSSPEVDSKSRLSPRRSRSGSSPE-----VKDKPRAA 1611
Query: 156 PGCTSAATSKPPARCRRSSAGSRRSRT 76
P S + S P + A RRSR+
Sbjct: 1612 PRAQSGSDSSPEPKAPAPRALPRRSRS 1638
>dbj|BAA83713.1| RNA binding protein [Homo sapiens]
Length = 1262
Score = 40.8 bits (94), Expect = 0.011
Identities = 48/149 (32%), Positives = 60/149 (40%), Gaps = 2/149 (1%)
Frame = -3
Query: 459 ARSTSLMARSTSARRSMWSGSQRSMLN-RCR*GVSG-SHTTVTSRGDASADTRRCRHHQL 286
+RS RS S +R WS S+ + R R G SH SR A+ R R
Sbjct: 315 SRSPQRRGRSRSPQRPGWSRSRNTQRRGRSRSARRGRSH----SRSPATRGRSRSRTPAR 370
Query: 285 QHQRRKHRVPHLRGQLRIQPRNIGSSAGPECRGLLIRRSRS*PPGCTSAATSKPPARCRR 106
+ + R R + R R S P RG RSRS P + T P R R
Sbjct: 371 RGRSRSRTPARRRSRSRTPTRRRSRSRTPARRG----RSRSRTPARRRSRTRSPVRRRSR 426
Query: 105 SSAGSRRSRTSRCEWDGGRQSARRGSLRA 19
S + +RRS SR R ARRG R+
Sbjct: 427 SRSPARRSGRSR-----SRTPARRGRSRS 450
Score = 37.0 bits (84), Expect = 0.15
Identities = 46/156 (29%), Positives = 60/156 (37%), Gaps = 9/156 (5%)
Frame = -3
Query: 459 ARSTSLMARSTSARRSMWSGSQRSMLNR------CR*GVSGSHTTVTSRGDASADTRRCR 298
+R+T RS SARR + R R G S S T R + TRR
Sbjct: 335 SRNTQRRGRSRSARRGRSHSRSPATRGRSRSRTPARRGRSRSRTPARRRSRSRTPTRRRS 394
Query: 297 HHQL--QHQRRKHRVP-HLRGQLRIQPRNIGSSAGPECRGLLIRRSRS*PPGCTSAATSK 127
+ + R + R P R + R R S P R RSRS P + S+
Sbjct: 395 RSRTPARRGRSRSRTPARRRSRTRSPVRRRSRSRSPARRS---GRSRSRTPARRGRSRSR 451
Query: 126 PPARCRRSSAGSRRSRTSRCEWDGGRQSARRGSLRA 19
PAR RS + + R+ R R ARRG R+
Sbjct: 452 TPARRGRSRSRTPARRSGRSR---SRTPARRGRSRS 484
Score = 36.2 bits (82), Expect = 0.26
Identities = 40/138 (28%), Positives = 57/138 (40%), Gaps = 4/138 (2%)
Frame = -3
Query: 477 ARVLQAARSTSLMARSTSARRSMWSGSQRSMLNRCR*GVSGSHTTVTSRGDASADTRRCR 298
AR +RS + R S R+ G RS + R G S S T S+ R+ +
Sbjct: 465 ARRSGRSRSRTPARRGRSRSRTPRRGRSRSR-SLVRRGRSHSRTPQRRGRSGSSSERKNK 523
Query: 297 HHQLQHQRRKHRVPHLRGQLRIQPRNIGSSAGPECRG---LLIRRSRS*PPGCTSAATSK 127
Q + R + P ++ + RI R S + P + L +RRS S C +
Sbjct: 524 SRTSQRRSRSNSSPEMK-KSRISSRRSRSLSSPRSKAKSRLSLRRSLSGSSPCPKQKSQT 582
Query: 126 PPARCRR-SSAGSRRSRT 76
PP R R SS +SRT
Sbjct: 583 PPRRSRSGSSQPKAKSRT 600
>ref|XP_234925.2| similar to R31449_3 [Rattus norvegicus]
Length = 1574
Score = 40.8 bits (94), Expect = 0.011
Identities = 45/160 (28%), Positives = 59/160 (36%), Gaps = 1/160 (0%)
Frame = -3
Query: 498 GCCNEAAARVLQAARSTSLMARSTSARRSMWSGSQRSMLNRCR*GVSGSHTTVTSRGDAS 319
G C + R+ A R +RS S S QRS C S S + SR
Sbjct: 802 GVCGRGSPRMRGAGRQMGSHSRSRSRSAGRRSRKQRSRSRSCSRSRSRSRSRSRSRSHGG 861
Query: 318 ADTRRCRHHQLQHQRRKHRVPHLRGQLRIQPRNIGSSAGPECRGLLIRRSRS-*PPGCTS 142
+ RR +H+RR+ R RG+ R S G + RRSRS PP S
Sbjct: 862 SGRRR-----REHERRRERKRRSRGRSR------SDSEGNRVQKSR-RRSRSLRPPRWHS 909
Query: 141 AATSKPPARCRRSSAGSRRSRTSRCEWDGGRQSARRGSLR 22
S + GSR + R W G ++ S R
Sbjct: 910 QDRSSHSDSGEEQAQGSRARKGHRHSWSPGSSASSSDSPR 949
