Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC003342A_C01 KCC003342A_c01
(449 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF43673.1|AF223361_1 homeodomain protein Nkx-1.2E4.29 [Mus m... 35 0.18
ref|NP_033149.1| NK1 transcription factor related, locus 2; spin... 35 0.18
gb|AAC82365.1| unknown [Myxococcus xanthus] 35 0.23
ref|NP_767527.1| ABC transporter substrate-binding protein [Brad... 35 0.30
pdb|1EHD|A Chain A, Crystal Structure Of Urtica Dioica Agglutini... 33 0.88
>gb|AAF43673.1|AF223361_1 homeodomain protein Nkx-1.2E4.29 [Mus musculus]
Length = 216
Score = 35.4 bits (80), Expect = 0.18
Identities = 28/91 (30%), Positives = 40/91 (43%), Gaps = 9/91 (9%)
Frame = +2
Query: 152 PVNVAQALGPGGPV-ATNGEPSTRASNSKG*HQLHFISGSSDNVRCGTNVCVGSSRATC- 325
P V + + PG PV + E A ++ HQ G + V VG+ +
Sbjct: 71 PDAVGRGIDPGSPVEGSEAEEEEEAEDAGRAHQPERWQGVHEGSPEARAVAVGTEESGAE 130
Query: 326 --PASPRTPG-----RRQHRSGCSQARRANT 397
PASP +PG RR+ S C++ RRA T
Sbjct: 131 GLPASPGSPGSPRPRRRRAESSCAKPRRART 161
>ref|NP_033149.1| NK1 transcription factor related, locus 2; spinal cord axial
homeobox gene 1 [Mus musculus]
gi|1170291|sp|P42580|SAX1_MOUSE NK1 transcription
factor-related protein 2 (Homeobox protein SAX-1)
(NKX-1.1) gi|543218|pir||S41860 gene Nkx-1.1 protein -
mouse gi|453172|emb|CAA53153.1| Sax-1 [Mus musculus]
gi|7248791|gb|AAF43669.1| homeobox protein [Mus
musculus] gi|7248794|gb|AAF43671.1|AF222444_1
homeodomain protein [Mus musculus]
Length = 305
Score = 35.4 bits (80), Expect = 0.18
Identities = 28/91 (30%), Positives = 40/91 (43%), Gaps = 9/91 (9%)
Frame = +2
Query: 152 PVNVAQALGPGGPV-ATNGEPSTRASNSKG*HQLHFISGSSDNVRCGTNVCVGSSRATC- 325
P V + + PG PV + E A ++ HQ G + V VG+ +
Sbjct: 71 PDAVGRGIDPGSPVEGSEAEEEEEAEDAGRAHQPERWQGVHEGSPEARAVAVGTEESGAE 130
Query: 326 --PASPRTPG-----RRQHRSGCSQARRANT 397
PASP +PG RR+ S C++ RRA T
Sbjct: 131 GLPASPGSPGSPRPRRRRAESSCAKPRRART 161
>gb|AAC82365.1| unknown [Myxococcus xanthus]
Length = 542
Score = 35.0 bits (79), Expect = 0.23
Identities = 27/84 (32%), Positives = 32/84 (37%)
Frame = -3
Query: 423 PRQRASGAIVLARRACEQPLRCCRRPGVRGLAGHVARLLPTQTLVPQRTLSEEPEIKCSW 244
PR + A AC P RCC RPG G A +T P + S P +
Sbjct: 196 PRPARASAAGATAPACLPPPRCCGRPGT-GCA---------RTAPPSTSASHPPPPRSPG 245
Query: 243 C*PFELLARVEGSPFVATGPPGPS 172
P R GSP A PP P+
Sbjct: 246 TPP-----RASGSPAAAPAPPSPA 264
>ref|NP_767527.1| ABC transporter substrate-binding protein [Bradyrhizobium
japonicum] gi|27349137|dbj|BAC46152.1| ABC transporter
substrate-binding protein [Bradyrhizobium japonicum USDA
110]
Length = 414
Score = 34.7 bits (78), Expect = 0.30
Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Frame = -2
Query: 442 SRYTLAAASEGKRCN-RVGTASLRAAAAVLPSARSTRARRACRPAAADANVGTTAD--VI 272
S+ LA A + + + +GT S AA A+LP A + PA AD G + +
Sbjct: 101 SKAALAEAYQDDKADIAIGTTSSAAALAILPVAEENKKILIVEPAVADQITGEKWNRYIF 160
Query: 271 RRARNKVQLVLAF*VAGPGRGLTI 200
R ARN Q ++ VA +G+T+
Sbjct: 161 RTARNSSQDAISNAVAIGKQGVTV 184
>pdb|1EHD|A Chain A, Crystal Structure Of Urtica Dioica Agglutinin Isolectin Vi
gi|7546214|pdb|1EHH|A Chain A, Crystal Structure Of
Urtica Dioica Agglutinin Isolectin Vi Complex With
Tri-N-Acetylchitotriose gi|7546215|pdb|1EHH|B Chain B,
Crystal Structure Of Urtica Dioica Agglutinin Isolectin
Vi Complex With Tri-N-Acetylchitotriose
Length = 89
Score = 33.1 bits (74), Expect = 0.88
Identities = 16/39 (41%), Positives = 17/39 (43%)
Frame = -1
Query: 395 CWHGELASSRCGAAVGQEYAGSPGMSPGCCRRKRWYHSG 279
CW GE + RCGAAVG G CC W G
Sbjct: 39 CWSGERSDHRCGAAVGNPPCG----QDRCCSVHGWCGGG 73
