KCC003338A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC003338A_C01 KCC003338A_c01
cagcagcagcggcccagccgccgcatcgctccaggtgctgaggagggcagctgtcgccgg
ccagccgcaagggctgtcagCAGCGGGGTCCGCCCTGACCGGAGAGGCTGGCCTGACCAG
TCCGGGCGCAGGCGACGTGGCCACTGCCGCGGCGGCCGCAGCAGGGCACATGGGTTATGA
GGATGCTGCGGTGCTGAGGGACCTCAACAGGACAGAAGCCAGCCCCCCTGTGATGGCGGC
GACAGTCACGGCGCAAGCCGCTTCTAATGCACGGCGCGGCAGCCTTGGCGGCCCCGCAGT
GATCTGCTGTTCAATCCTCAGCAACCTAGAGGCATGCACAACCACTGGCACAGGTGGCAT
TCAGGCGCCAACCAAAGACGCCGGCCTGACACCAACAGGCGGCACACGCACCGGGCCCGT
GGGCGCCCCGCAAGCCCGCTACAACAGCGGCAGCAACAACTTCCTGCAGCGTGGAATGCA
CGGCCCCTCGGGCTTGCTTGTGCCCCTCACAGGCGGCGAGGGCAGCGTGGGCGCCGTGGG
CTTAGGCGTAGGGCCTCAGACGCTGGTTATCAATGAGGAGCTCATAAGCGC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC003338A_C01 KCC003338A_c01
         (591 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_044506.1| very large tegument protein [Human herpesvirus ...    51  1e-05
ref|XP_311129.1| ENSANGP00000004749 [Anopheles gambiae] gi|30178...    50  2e-05
ref|NP_656307.1| hypothetical protein predicted by GeneMark [Bac...    49  4e-05
ref|ZP_00141853.1| COG3210: Large exoproteins involved in heme u...    49  5e-05
ref|ZP_00141855.1| COG3210: Large exoproteins involved in heme u...    49  5e-05

>ref|NP_044506.1| very large tegument protein [Human herpesvirus 2]
            gi|1869859|emb|CAB06722.1| very large tegument protein
            [Human herpesvirus 2]
          Length = 3122

 Score = 51.2 bits (121), Expect = 1e-05
 Identities = 53/171 (30%), Positives = 67/171 (38%), Gaps = 14/171 (8%)
 Frame = -1

Query: 531  PTLPSP--PVRGTSKPEGPCIPRCRKLLLPLL*RACGAPTGPVRVPPVGVRPASLVGA*M 358
            P LP+P  PV  +++P  P  P   +   P    A   P GP      G  PA  + A +
Sbjct: 2694 PALPAPVAPVAASARP--PDQPPTPESAPPAWVSALPLPPGPASAR--GAFPAPTL-API 2748

Query: 357  PPVPV---VVHASRLLRIEQQITAGPPRLPRRALEAACAVTVAAITGGLASVLLRSLSTA 187
            PP P    VV      R  +Q TAGP   P R   A     +        S  L SL + 
Sbjct: 2749 PPPPAEGAVVPGGDRRRGRRQTTAGPSPTPPRGPAAGPPRRLTRPAVASLSASLNSLPSP 2808

Query: 186  ASS*PMCPAAAAAAVATSPAPGLVRPASPVRADPAADSP---------CGW 61
                    A +AAA A  P+PGL  P S V+  P   +P         CGW
Sbjct: 2809 RDPADHAAAVSAAAAAVPPSPGLAPPTSAVQTSPPPLAPGPVAPSEPLCGW 2859

>ref|XP_311129.1| ENSANGP00000004749 [Anopheles gambiae] gi|30178092|gb|EAA06612.2|
           ENSANGP00000004749 [Anopheles gambiae str. PEST]
          Length = 633

 Score = 50.4 bits (119), Expect = 2e-05
 Identities = 56/182 (30%), Positives = 74/182 (39%), Gaps = 16/182 (8%)
 Frame = -1

Query: 552 PTPKPT--APTLPSPPVRGTSKPEGPCIPRCRKLLLPLL*RACGAPTGPVRVPPVGVRPA 379
           P P PT  A    +PP+   + P     P  + +L  +      AP  P   PP G  P 
Sbjct: 387 PAPPPTCWAFDCRTPPLFSCTSPPPDMTPPLKPMLFVIT--GPPAPPAPPPTPPFGPMPL 444

Query: 378 SLVGA*MPPVPVVVHASRLLRIE---QQITAGPPRLPRRA------LEAACAVTVAAITG 226
            +     PP   +   + LL I    +   A PP LP RA       +AA    VAA   
Sbjct: 445 PMPSMPAPPPAPIAFTTTLLPIAWPTRAARASPPALPFRAPARPPSAQAAGPGVVAAAAA 504

Query: 225 GLASVLLRSLSTAASS*PMCPAAAAAAVATSPAPGLVRPA-----SPVRADPAADSPCGW 61
             A+    ++  A+   P  P+  AAA  TSP+    RP+     SP  A PAA  P G 
Sbjct: 505 AAAAPAAVAVRPAS---PCTPSPCAAACPTSPSAA--RPSGCPGRSPPSAPPAA-RPAGP 558

Query: 60  PA 55
           PA
Sbjct: 559 PA 560

 Score = 38.9 bits (89), Expect = 0.054
 Identities = 26/76 (34%), Positives = 34/76 (44%), Gaps = 4/76 (5%)
 Frame = -1

Query: 552 PTPKPTA-PTLPSPPVRGTSKPEGPCIPRCRKLL---LPLL*RACGAPTGPVRVPPVGVR 385
           P P P A P +P+PPV     P  P IP  R +     P L  + G P  P   PP  + 
Sbjct: 135 PVPAPPALPIVPAPPVPPPPPPPPPPIPESRAIPSYPAPALPPSTGPPVPPAPPPPAPLP 194

Query: 384 PASLVGA*MPPVPVVV 337
            A L+    PP P ++
Sbjct: 195 AAKLLVFGPPPPPPLI 210

 Score = 38.1 bits (87), Expect = 0.092
 Identities = 48/175 (27%), Positives = 67/175 (37%), Gaps = 4/175 (2%)
 Frame = -1

Query: 552 PTPKPTAPTLPSPPVRGTSKPEGPCIPRCRKLLLPLL*RACGAPTGPVRVPPVGVRPASL 373
           P   PT P +P P     + P  P  P    L +P    A G PT P R PP+   P +L
Sbjct: 40  PPTTPTTPPMPPPTDMAFTGPPTPTTPTPTTLPVP----APGMPTLP-RPPPM---PTTL 91

Query: 372 VGA*MPPVPVVVHASRLLRIEQQITAGPPRLPRRALEAACAVTVAAITGGLASVLLRSLS 193
            G  M P  V    + ++ +   +   PP  P   L    AV V+ +    A   L  + 
Sbjct: 92  PGC-MGPFDV----ATVVALGPIVPPAPPTTPYGLLARRSAVPVSPVPPVPAPPALPIVP 146

Query: 192 T----AASS*PMCPAAAAAAVATSPAPGLVRPASPVRADPAADSPCGWPATAALL 40
                     P  P   + A+ + PAP L  P++     PA   P   PA   L+
Sbjct: 147 APPVPPPPPPPPPPIPESRAIPSYPAPAL-PPSTGPPVPPAPPPPAPLPAAKLLV 200

 Score = 33.1 bits (74), Expect = 3.0
 Identities = 46/163 (28%), Positives = 56/163 (34%), Gaps = 1/163 (0%)
 Frame = -1

Query: 555 GPTPKPTAPTLPSPPVRGTSKPEGPCIPR-CRKLLLPLL*RACGAPTGPVRVPPVGVRPA 379
           GP     A    + P     +P  PC P  C          A   PT P        RP+
Sbjct: 495 GPGVVAAAAAAAAAPAAVAVRPASPCTPSPC----------AAACPTSPS-----AARPS 539

Query: 378 SLVGA*MPPVPVVVHASRLLRIEQQITAGPPRLPRRALEAACAVTVAAITGGLASVLLRS 199
              G   P  P    A+R        TA  P    R+   + +    A+  G  S    S
Sbjct: 540 GCPGRSPPSAPP---AARPAGPPAACTARAPPGRSRSAPPSRSSAGPAVASGCGSPPDCS 596

Query: 198 LSTAASS*PMCPAAAAAAVATSPAPGLVRPASPVRADPAADSP 70
            S AA      P A+ AA  +S  PG  RPA P  A P A  P
Sbjct: 597 ASCAAR-----PPASPAAPRSSAPPGASRPA-PRPAAPGAPRP 633

>ref|NP_656307.1| hypothetical protein predicted by GeneMark [Bacillus anthracis
           A2012] gi|30262449|ref|NP_844826.1| conserved
           hypothetical protein [Bacillus anthracis str. Ames]
           gi|30257080|gb|AAP26312.1| conserved hypothetical
           protein [Bacillus anthracis str. Ames]
          Length = 366

 Score = 49.3 bits (116), Expect = 4e-05
 Identities = 53/180 (29%), Positives = 68/180 (37%), Gaps = 19/180 (10%)
 Frame = +2

Query: 65  PQGLSAAGSALTGEAGLTSPGAGDVATAAAAAAGHMGYEDAAVLRDLNRTEASPPVMAAT 244
           P G++ A  A TG  G T P      T A  A G  G   A  +  +        V  AT
Sbjct: 32  PTGITGATGA-TGITGATGPTG---TTGATGATGITGVTGATGITGVTGATGITGVTGAT 87

Query: 245 ----------VTAQAASNARRGSLGGPAVICCSILSNLEACT-TTGTGGIQAPTKDAGLT 391
                     +T         G+ G   +   +  + +   T  TGT G+  PT D GL 
Sbjct: 88  GITGVTGPTGITGATGPTGITGATGPAGITGVTGPTGITGATGPTGTTGVTGPTGDTGLA 147

Query: 392 ----PTGGT----RTGPVGAPQARYNSGSNNFLQRGMHGPSGLLVPLTGGEGSVGAVGLG 547
               PTG T     TGP G   A   +G+      G  GP+G    LTG  G+ GA G G
Sbjct: 148 GATGPTGATGLAGATGPTGDTGATGPTGATGL--AGATGPTG-ATGLTGATGATGATGGG 204

>ref|ZP_00141853.1| COG3210: Large exoproteins involved in heme utilization or adhesion
           [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 2307

 Score = 48.9 bits (115), Expect = 5e-05
 Identities = 51/167 (30%), Positives = 66/167 (38%), Gaps = 8/167 (4%)
 Frame = +1

Query: 4   QQRPSRRIAPGAEE--GSCRRPAA----RAVSSGVRPDRRGWPDQSGRRRRGHCRGGRSR 165
           Q+ P++R  PG +   GS   P A    R    G RP RR  P Q  R+     R GR+ 
Sbjct: 122 QRHPAQRRQPGGQPRAGSEGEPGAGQPGRQPEGGDRPGRRRAPGQPWRQA---ARRGRTA 178

Query: 166 AHGL*GCCGAEGPQQDRSQPPCDGGDSHGASRF*CTARQPWRP--RSDLLFNPQQPRGMH 339
             G       E P Q   +P  + G   G   +   +RQPWRP  RS+    P       
Sbjct: 179 GRG-------EQPGQPPGRPVAEPGPRRGQDPW--RSRQPWRPGRRSERAAGP------- 222

Query: 340 NHWHRWHSGANQRRRPDTNRRHTHRARGRPASPLQQRQQQLPAAWNA 480
                  +G +Q R P    RH HR R       +Q  Q+ P A  A
Sbjct: 223 ----GCRTGQSQCRSPFQQGRHGHRGRSSGQQCGRQAGQRAPYALKA 265

>ref|ZP_00141855.1| COG3210: Large exoproteins involved in heme utilization or adhesion
           [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 2260

 Score = 48.9 bits (115), Expect = 5e-05
 Identities = 51/167 (30%), Positives = 66/167 (38%), Gaps = 8/167 (4%)
 Frame = +1

Query: 4   QQRPSRRIAPGAEE--GSCRRPAA----RAVSSGVRPDRRGWPDQSGRRRRGHCRGGRSR 165
           Q+ P++R  PG +   GS   P A    R    G RP RR  P Q  R+     R GR+ 
Sbjct: 75  QRHPAQRRQPGGQPRAGSEGEPGAGQPGRQPEGGDRPGRRRAPGQPWRQA---ARRGRTA 131

Query: 166 AHGL*GCCGAEGPQQDRSQPPCDGGDSHGASRF*CTARQPWRP--RSDLLFNPQQPRGMH 339
             G       E P Q   +P  + G   G   +   +RQPWRP  RS+    P       
Sbjct: 132 GRG-------EQPGQPPGRPVAEPGPRRGQDPW--RSRQPWRPGRRSERAAGP------- 175

Query: 340 NHWHRWHSGANQRRRPDTNRRHTHRARGRPASPLQQRQQQLPAAWNA 480
                  +G +Q R P    RH HR R       +Q  Q+ P A  A
Sbjct: 176 ----GCRTGQSQCRSPFQQGRHGHRGRSSGQQCGRQAGQRAPYALKA 218



EST assemble image


clone accession position
1 LCL096d05_r AV631575 1 472
2 MXL039e09_r BP095298 117 591




Chlamydomonas reinhardtii
Kazusa DNA Research Institute