KCC003329A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC003329A_C01 KCC003329A_c01
ctgctgagccgtcagagccagggcggcatgggcggccccggcaaccccaacaacccgctc
aacttcggcaagagccgcgcCCGCTTCCAGATGGAGGCCAACACCGGCGTCACCTTCAAC
GACGTGGCCGGTGTGGACGAGGCCAAGCAGGACTTCATGGAGATTGTGGAGTTCCTGAAG
CGCCCCGAGCGCTTCACCGCTGTGGGTGCCCGCATTCCCAAGGGCTGCCTGCTGGTGGGT
CCCCCCGGAACCGGTAAGACCCTGCTGGCCAAGGCCATTGCCGGCGAGGCCGGTGTGCCC
TTCTTCTCCGTCTCCGGCTCTGAGTTCGTGGAGATGTTCGTCGGTGTCGGCGCTTCGCGT
GTGCGCGACCTGTTCAAGAAGGCCAAGGAGAACGCCCCCTGCCTGGTGTTCGTGGATGAG
ATTGACGCTGTGGGCCGCTCTCGCGGTACCGGCATCGGCGGCACCAACGACGAGCGCGAG
CAGACTCTGAACCAGATGCTGACTGAGATGGATGGCTTCGAGGGCAACACCGGCATCATC
GTCATCGCCGCCACCAACCGCGCTGACATTCTGGACCCCGCCCTGCTGCGCCCCGGCCGC
TTCGACCGCCAGGTGTCTGTGGACCTGCCCGACCAGAAGGGCCGCCTGGAGATCCTGAAG
GTGCACGCGCGCAACAAGAAGGTGGCTGAGGACGTGGACCTGCAGGAGGTGGCCATGCGC
ACCCCCGGTTTCGCCGGTGCCAACCTGATGAACCTGCTCAACGAGGCGGCCATCCTGGCG
GGCCGCCGCGGCCTCAAGGTGAGCGCGAGGGCAGCAGCAGCAGCGGGCTGCAGCGGGCAA
GGTGGCGGGGGTCCCAGGGCGGCTGAAAACTAGAGCGTTCTTGGGCAAA


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC003329A_C01 KCC003329A_c01
         (889 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAD17230.1| FtsH-like protein Pftf precursor [Nicotiana tabacum]   460  e-128
emb|CAA09935.1| chloroplast protease [Capsicum annuum]                458  e-128
ref|NP_850156.1| FtsH protease (VAR2) [Arabidopsis thaliana] gi|...   455  e-127
gb|AAF24819.1|AC007592_12 F12K11.22 [Arabidopsis thaliana]            451  e-125
gb|AAL31897.1|AF419565_1 At1g06430/F12K11_24 [Arabidopsis thalia...   451  e-125

>gb|AAD17230.1| FtsH-like protein Pftf precursor [Nicotiana tabacum]
          Length = 693

 Score =  460 bits (1183), Expect = e-128
 Identities = 230/264 (87%), Positives = 246/264 (93%)
 Frame = +1

Query: 1   LLSRQSQGGMGGPGNPNNPLNFGKSRARFQMEANTGVTFNDVAGVDEAKQDFMEIVEFLK 180
           LLSR+S GGMGGPG P NPL FG+S+A+FQME NTGVTF+DVAGVDEAKQDFME+VEFLK
Sbjct: 192 LLSRRSPGGMGGPGGPGNPLAFGQSKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLK 251

Query: 181 RPERFTAVGARIPKGCLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEMFVGVGASR 360
           +PERFTAVGARIPKG LLVGPPGTGKTLLAKAIAGEAGVPFFS+SGSEFVEMFVGVGASR
Sbjct: 252 KPERFTAVGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASR 311

Query: 361 VRDLFKKAKENAPCLVFVDEIDAVGRSRGTGIGGTNDEREQTLNQMLTEMDGFEGNTGII 540
           VRDLFKKAKENAPC+VFVDEIDAVGR RGTGIGG NDEREQTLNQ+LTEMDGFEGNTGII
Sbjct: 312 VRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGII 371

Query: 541 VIAATNRADILDPALLRPGRFDRQVSVDLPDQKGRLEILKVHARNKKVAEDVDLQEVAMR 720
           V+AATNRADILD ALLRPGRFDRQVSVD+PD KGR EILKVHA NKK   DV L+ +AMR
Sbjct: 372 VVAATNRADILDSALLRPGRFDRQVSVDVPDIKGRTEILKVHAGNKKFDSDVSLEVIAMR 431

Query: 721 TPGFAGANLMNLLNEAAILAGRRG 792
           TPGF+GA+L NLLNEAAILAGRRG
Sbjct: 432 TPGFSGADLANLLNEAAILAGRRG 455

>emb|CAA09935.1| chloroplast protease [Capsicum annuum]
          Length = 693

 Score =  458 bits (1179), Expect = e-128
 Identities = 229/264 (86%), Positives = 246/264 (92%)
 Frame = +1

Query: 1   LLSRQSQGGMGGPGNPNNPLNFGKSRARFQMEANTGVTFNDVAGVDEAKQDFMEIVEFLK 180
           LLSR+S GGMGGPG P NPL FG+S+A+FQME NTGVTF+DVAGVDEAKQDFME+VEFLK
Sbjct: 192 LLSRRSNGGMGGPGGPGNPLAFGQSKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLK 251

Query: 181 RPERFTAVGARIPKGCLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEMFVGVGASR 360
           +PERFTAVGARIPKG LLVGPPGTGKTLLAKAIAGEAGVPFFS+SGSEFVEMFVGVGASR
Sbjct: 252 KPERFTAVGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASR 311

Query: 361 VRDLFKKAKENAPCLVFVDEIDAVGRSRGTGIGGTNDEREQTLNQMLTEMDGFEGNTGII 540
           VRDLFKKAKENAPC+VFVDEIDAVGR RGTGIGG NDEREQTLNQ+LTEMDGFEGNTGII
Sbjct: 312 VRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGII 371

Query: 541 VIAATNRADILDPALLRPGRFDRQVSVDLPDQKGRLEILKVHARNKKVAEDVDLQEVAMR 720
           V+AATNRADILD ALLRPGRFDRQVSVD+PD KGR EILKVHA NKK   DV L+ +AMR
Sbjct: 372 VVAATNRADILDSALLRPGRFDRQVSVDVPDIKGRTEILKVHAGNKKFDSDVSLEVIAMR 431

Query: 721 TPGFAGANLMNLLNEAAILAGRRG 792
           TPGF+GA+L NLL+EAAILAGRRG
Sbjct: 432 TPGFSGADLANLLSEAAILAGRRG 455

>ref|NP_850156.1| FtsH protease (VAR2) [Arabidopsis thaliana] gi|25308030|pir||F84714
           probable ftsH chloroplast proteinase [imported] -
           Arabidopsis thaliana gi|3201633|gb|AAC20729.1| FtsH
           protease (VAR2) [Arabidopsis thaliana]
           gi|7650138|gb|AAF65925.1|AF135189_1 zinc dependent
           protease [Arabidopsis thaliana]
          Length = 695

 Score =  455 bits (1170), Expect = e-127
 Identities = 225/263 (85%), Positives = 245/263 (92%)
 Frame = +1

Query: 1   LLSRQSQGGMGGPGNPNNPLNFGKSRARFQMEANTGVTFNDVAGVDEAKQDFMEIVEFLK 180
           LLSR+S GGMGGPG P NPL FG+S+A+FQME NTGVTF+DVAGVDEAKQDFME+VEFLK
Sbjct: 188 LLSRRSGGGMGGPGGPGNPLQFGQSKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLK 247

Query: 181 RPERFTAVGARIPKGCLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEMFVGVGASR 360
           +PERFTAVGA+IPKG LL+GPPGTGKTLLAKAIAGEAGVPFFS+SGSEFVEMFVGVGASR
Sbjct: 248 KPERFTAVGAKIPKGVLLIGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASR 307

Query: 361 VRDLFKKAKENAPCLVFVDEIDAVGRSRGTGIGGTNDEREQTLNQMLTEMDGFEGNTGII 540
           VRDLFKKAKENAPC+VFVDEIDAVGR RGTGIGG NDEREQTLNQ+LTEMDGFEGNTG+I
Sbjct: 308 VRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGVI 367

Query: 541 VIAATNRADILDPALLRPGRFDRQVSVDLPDQKGRLEILKVHARNKKVAEDVDLQEVAMR 720
           V+AATNRADILD ALLRPGRFDRQVSVD+PD KGR +ILKVHA NKK   DV L+ +AMR
Sbjct: 368 VVAATNRADILDSALLRPGRFDRQVSVDVPDVKGRTDILKVHAGNKKFDNDVSLEIIAMR 427

Query: 721 TPGFAGANLMNLLNEAAILAGRR 789
           TPGF+GA+L NLLNEAAILAGRR
Sbjct: 428 TPGFSGADLANLLNEAAILAGRR 450

>gb|AAF24819.1|AC007592_12 F12K11.22 [Arabidopsis thaliana]
          Length = 662

 Score =  451 bits (1159), Expect = e-125
 Identities = 224/264 (84%), Positives = 243/264 (91%)
 Frame = +1

Query: 1   LLSRQSQGGMGGPGNPNNPLNFGKSRARFQMEANTGVTFNDVAGVDEAKQDFMEIVEFLK 180
           LLSR+S GGMGGPG P  PL  G+S+A+FQME NTGVTF+DVAGVDEAKQDFME+VEFLK
Sbjct: 181 LLSRRSSGGMGGPGGPGFPLQIGQSKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLK 240

Query: 181 RPERFTAVGARIPKGCLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEMFVGVGASR 360
           +PERFTAVGARIPKG LLVGPPGTGKTLLAKAIAGEAGVPFFS+SGSEFVEMFVGVGASR
Sbjct: 241 KPERFTAVGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASR 300

Query: 361 VRDLFKKAKENAPCLVFVDEIDAVGRSRGTGIGGTNDEREQTLNQMLTEMDGFEGNTGII 540
           VRDLFKKAKENAPC+VFVDEIDAVGR RGTGIGG NDEREQTLNQ+LTEMDGFEGNTG+I
Sbjct: 301 VRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGVI 360

Query: 541 VIAATNRADILDPALLRPGRFDRQVSVDLPDQKGRLEILKVHARNKKVAEDVDLQEVAMR 720
           V+AATNRADILD ALLRPGRFDRQVSVD+PD KGR +ILKVH+ NKK    V L+ +AMR
Sbjct: 361 VVAATNRADILDSALLRPGRFDRQVSVDVPDVKGRTDILKVHSGNKKFESGVSLEVIAMR 420

Query: 721 TPGFAGANLMNLLNEAAILAGRRG 792
           TPGF+GA+L NLLNEAAILAGRRG
Sbjct: 421 TPGFSGADLANLLNEAAILAGRRG 444

>gb|AAL31897.1|AF419565_1 At1g06430/F12K11_24 [Arabidopsis thaliana]
           gi|27363292|gb|AAO11565.1| At1g06430/F12K11_24
           [Arabidopsis thaliana] gi|28392858|gb|AAO41866.1|
           putative FtsH protease [Arabidopsis thaliana]
          Length = 685

 Score =  451 bits (1159), Expect = e-125
 Identities = 224/264 (84%), Positives = 243/264 (91%)
 Frame = +1

Query: 1   LLSRQSQGGMGGPGNPNNPLNFGKSRARFQMEANTGVTFNDVAGVDEAKQDFMEIVEFLK 180
           LLSR+S GGMGGPG P  PL  G+S+A+FQME NTGVTF+DVAGVDEAKQDFME+VEFLK
Sbjct: 181 LLSRRSSGGMGGPGGPGFPLQIGQSKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLK 240

Query: 181 RPERFTAVGARIPKGCLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEMFVGVGASR 360
           +PERFTAVGARIPKG LLVGPPGTGKTLLAKAIAGEAGVPFFS+SGSEFVEMFVGVGASR
Sbjct: 241 KPERFTAVGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASR 300

Query: 361 VRDLFKKAKENAPCLVFVDEIDAVGRSRGTGIGGTNDEREQTLNQMLTEMDGFEGNTGII 540
           VRDLFKKAKENAPC+VFVDEIDAVGR RGTGIGG NDEREQTLNQ+LTEMDGFEGNTG+I
Sbjct: 301 VRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGVI 360

Query: 541 VIAATNRADILDPALLRPGRFDRQVSVDLPDQKGRLEILKVHARNKKVAEDVDLQEVAMR 720
           V+AATNRADILD ALLRPGRFDRQVSVD+PD KGR +ILKVH+ NKK    V L+ +AMR
Sbjct: 361 VVAATNRADILDSALLRPGRFDRQVSVDVPDVKGRTDILKVHSGNKKFESGVSLEVIAMR 420

Query: 721 TPGFAGANLMNLLNEAAILAGRRG 792
           TPGF+GA+L NLLNEAAILAGRRG
Sbjct: 421 TPGFSGADLANLLNEAAILAGRRG 444



EST assemble image


clone accession position
1 MXL009d04_r BP093509 1 400
2 MX009h04_r BP086483 213 710
3 LCL091c05_r AV631275 601 890




Chlamydomonas reinhardtii
Kazusa DNA Research Institute