KCC003328A_c01
[Fasta Sequence]
[Nr Search]
[EST assemble image]
Fasta Sequence
>KCC003328A_C01 KCC003328A_c01
ATAACACGCGCTAGGGTCCATACTGAAAGGGTGGAACTGTCGCGACACCCGACAACTCCC
TGTAGGACGCTCCCCTCGCTCTTCGACCAATTCAGTTGTACACAGTGCTGCAACACGGCG
TAGGATACTACACGCATATACAAGTGCTAGGTAGTCTAGAGCCTGGCCTGCGCGCCAACG
CGTGTCGACGAGCTGCGGGGCTTACGTGTCCCCGGTGTTGGGGGTGGTGCGCGGAGTCGA
CACACACACGCCGAGACGGCCCTTTCACCCTGGCCATTGGCACAGCTCAAGCAACAGGTG
CTGATGCACTAACTAGGCCACGGACCTTTCCCAGGCAGCTGCCTTGACACTCAACTCCAA
GCCTTGACCTCCTCCGAGCGAGAGGGCG
Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC003328A_C01 KCC003328A_c01
(388 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAG29834.1|AF308446_1 unknown [Paracoccus pantotrophus] 33 0.74
gb|AAM94762.1| CalU4 [Micromonospora echinospora] 33 0.97
dbj|BAB00652.1| unnamed protein product [Oryza sativa (japonica ... 33 1.3
ref|XP_344726.1| similar to acetylglucosaminyltransferase-like p... 33 1.3
ref|XP_330013.1| hypothetical protein [Neurospora crassa] gi|289... 32 2.2
>gb|AAG29834.1|AF308446_1 unknown [Paracoccus pantotrophus]
Length = 251
Score = 33.5 bits (75), Expect = 0.74
Identities = 21/42 (50%), Positives = 21/42 (50%)
Frame = -1
Query: 271 RVKGPSRRVCVDSAHHPQHRGHVSPAARRHALARRPGSRLPS 146
RV PSRR S HR RRH RRPGSRLPS
Sbjct: 128 RVSKPSRRSRPSSLPRRPHRR----TPRRHRRMRRPGSRLPS 165
>gb|AAM94762.1| CalU4 [Micromonospora echinospora]
Length = 264
Score = 33.1 bits (74), Expect = 0.97
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = +3
Query: 66 DAPLALRPIQLYTVLQHGVGYYTHIQVLGSLEPGLRANA-CRRAAGLTCPRC 218
D P AL + +T+ GVG++ LG++ PGL A A G+T P C
Sbjct: 97 DLPTALAGVGYHTLCLGGVGFFNRRSPLGAVLPGLFAEAHWEPEFGVTSPTC 148
>dbj|BAB00652.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]
gi|11138075|dbj|BAB17748.1| hypothetical protein [Oryza
sativa (japonica cultivar-group)]
gi|13873018|dbj|BAB44122.1| B1085F09.18 [Oryza sativa
(japonica cultivar-group)]
Length = 247
Score = 32.7 bits (73), Expect = 1.3
Identities = 23/75 (30%), Positives = 39/75 (51%), Gaps = 1/75 (1%)
Frame = -1
Query: 385 PLARRRSRL-GVECQGSCLGKVRGLVSASAPVA*AVPMARVKGPSRRVCVDSAHHPQHRG 209
P A RRS+ G + + L KVR V+A+AP+ A ++ ++GP+ +AH ++
Sbjct: 134 PFASRRSKHEGFDPFAAALEKVRRDVAAAAPIRRARSLSPLRGPA---VAAAAHRKENNP 190
Query: 208 HVSPAARRHALARRP 164
+ + R A RP
Sbjct: 191 YAAAVPARAVTASRP 205
>ref|XP_344726.1| similar to acetylglucosaminyltransferase-like protein [Rattus
norvegicus]
Length = 598
Score = 32.7 bits (73), Expect = 1.3
Identities = 17/45 (37%), Positives = 24/45 (52%)
Frame = -2
Query: 192 LVDTRWRAGQALDYLALVYACSILRRVAALCTTELVEERGERPTG 58
L+DT WR AL + LV ++ LC ++L+E RGE G
Sbjct: 51 LIDTGWRGCPALSF-TLVGQAVMIEACCGLCQSQLMERRGELSEG 94
>ref|XP_330013.1| hypothetical protein [Neurospora crassa] gi|28925514|gb|EAA34546.1|
hypothetical protein [Neurospora crassa]
Length = 171
Score = 32.0 bits (71), Expect = 2.2
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = -3
Query: 272 QGERAVSACVCRLRAPPPTPGTRKPRSSSTRVGAQARL 159
+G + A CR + PP P P SSS R G+ +RL
Sbjct: 37 EGGVSCQAVWCRFKTPPSPPSPPSPPSSSPRSGSSSRL 74
EST assemble image
|
|
|
|
clone |
accession |
position |
1 |
LCL090b03_r |
AV631196 |
1 |
388 |
2 |
MXL093h08_r |
BP098478 |
1 |
263 |
|
Chlamydomonas reinhardtii
Kazusa DNA Research Institute