Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC003315A_C01 KCC003315A_c01
(397 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAO41317.1| polymerase protein [Hepatitis B virus] 32 1.6
ref|NP_522790.1| CONSERVED HYPOTHETICAL PROTEIN [Ralstonia solan... 32 2.8
ref|XP_302670.1| hypothetical protein XP_302670 [Homo sapiens] 31 3.6
ref|NP_003885.2| period 2 isoform 2; period, Drosophila, homolog... 31 3.6
dbj|BAC40849.1| unnamed protein product [Mus musculus] 30 6.2
>gb|AAO41317.1| polymerase protein [Hepatitis B virus]
Length = 843
Score = 32.3 bits (72), Expect = 1.6
Identities = 20/49 (40%), Positives = 26/49 (52%)
Frame = -3
Query: 278 VSPSNSEPSLACAAYMLYLLTACCHRSAGAKAMTSHSSTAHTHRQSAIA 132
V PS S P+ CA+ ++C H+SAG KA S ST+ H S A
Sbjct: 257 VEPSGSGPTHNCASSS----SSCLHQSAGRKAAYSLISTSKGHSSSGHA 301
>ref|NP_522790.1| CONSERVED HYPOTHETICAL PROTEIN [Ralstonia solanacearum]
gi|17431703|emb|CAD18380.1| CONSERVED HYPOTHETICAL
PROTEIN [Ralstonia solanacearum]
Length = 272
Score = 31.6 bits (70), Expect = 2.8
Identities = 19/67 (28%), Positives = 35/67 (51%), Gaps = 1/67 (1%)
Frame = -2
Query: 288 VAARFPKQL*AFACLRGVHAIPANCLLSPKCRGQSH-DQSQFYRTYTQAERHRGLTASSL 112
+A+R+P ++ +F + G + P +C LS + G D +F+ + + RH AS+L
Sbjct: 117 LASRWPDRVLSFTDIEG-NIAPEDCFLSRQIVGDPEADAERFFDAFIERTRHAPAYASAL 175
Query: 111 VIFTRRH 91
+ RH
Sbjct: 176 YAASLRH 182
>ref|XP_302670.1| hypothetical protein XP_302670 [Homo sapiens]
Length = 107
Score = 31.2 bits (69), Expect = 3.6
Identities = 25/92 (27%), Positives = 32/92 (34%), Gaps = 26/92 (28%)
Frame = +2
Query: 101 VKMTKLEAVRPRWRSACVYVR*NCDWSWL----------------------WPRHFGDS- 211
++MT + P + C R C W+W+ WPR G S
Sbjct: 4 MEMTWMPPTAPCTPAMCPLTRWRCTWTWMETTPSTPTATASGPRTPLQTTCWPRRPGPSA 63
Query: 212 -KQLAGIACTPRRQAKAQSCL--GKRAATCLC 298
L G C RR K + CL G R T C
Sbjct: 64 VPHLRGSPC--RRWGKTEKCLSWGSRGVTSCC 93
>ref|NP_003885.2| period 2 isoform 2; period, Drosophila, homolog of, 2; period
circadian protein 2 [Homo sapiens]
gi|5821134|dbj|BAA83709.1| Per2S [Homo sapiens]
Length = 404
Score = 31.2 bits (69), Expect = 3.6
Identities = 23/69 (33%), Positives = 30/69 (43%), Gaps = 9/69 (13%)
Frame = -2
Query: 201 KCRGQSHDQSQFYRTYTQAERHRGLTASSLV----IFTRRHTPSCI-----ESPIHYRPF 49
K R Q +SQ H G A + IFT HTP+C+ ESP R
Sbjct: 297 KVRDQQGAESQLCCLLLAERVHSGYEAPRIPPEKRIFTTTHTPNCLFQDVDESPAVRRAA 356
Query: 48 FQRFNHTQS 22
F+ F+H+ S
Sbjct: 357 FRLFSHSVS 365
>dbj|BAC40849.1| unnamed protein product [Mus musculus]
Length = 107
Score = 30.4 bits (67), Expect = 6.2
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -1
Query: 157 IHTGRAPSRPNRFQFSHLHTSAHTLVH 77
IHT AP P+ + H HT HT +H
Sbjct: 49 IHTCNAPPAPHIHTYIHTHTYIHTYIH 75
