KCC003313A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC003313A_C01 KCC003313A_c01
cgccaacgcgCCCACAATGGAGGAGCAGCGCCGTCTGTGGGACAGCAACATGCTCATCCA
CTTCGTGAAGAACGGGCCCAAGCCGCTGGTGTGGCTGTTCGTCAAGTTCGTGAGCCTGGT
GCTCTTCAACAAGGCCGTGCTGTGGTTCGGCGGCGGCGTGCCGGGCAAGCAGTACGCGCT
GATCAAGGCGGACGGCATCCCCATTGAGAACTACATCGCGCGCACCATGGACGGCGTGGC
GGAGAACTCGCACGTGCGCAAGCAGAACTACTTCTACTACAACTGCCTCACCGGCAAGTT
CCTGCGCGACAACTGCCCCACCTACCTGCGCGAGGCGGCCTTCGCCACCCTCAAGAGTGG
CGTGGTGGACAACCTGACCGTCTCCACCAACTTCTTCATGGAGGAGCTCAAAGCGCGCAC
CTACACCAAGGCTGATTCTGATGGACCACGTGGACTGGCTGGATATGCCCGTGGCCAACG
AGCTGGCCGAGTGCCTGGCCAAGCAGGTTGCGCCGGGCGGCATCGTCATCTGGCGCTCCG
CCTCCCTCAGCCCGCCCTACGCCGAGCTGATC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC003313A_C01 KCC003313A_c01
         (572 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|XP_330219.1| hypothetical protein [Neurospora crassa] gi|289...    57  4e-10
ref|NP_863860.1| hypothetical protein [Pirellula sp.] gi|3244301...    47  5e-08
ref|NP_295856.1| conserved hypothetical protein [Deinococcus rad...    49  4e-05
gb|AAK61490.1| glycoprotein gp2 [Equine herpesvirus 4]                 49  5e-05
ref|NP_652552.1| CG13990-PA [Drosophila melanogaster] gi|2294574...    49  5e-05

>ref|XP_330219.1| hypothetical protein [Neurospora crassa] gi|28927226|gb|EAA36182.1|
            hypothetical protein [Neurospora crassa]
          Length = 908

 Score = 57.0 bits (136), Expect(2) = 4e-10
 Identities = 47/157 (29%), Positives = 70/157 (43%), Gaps = 22/157 (14%)
 Frame = +2

Query: 5    NAPTMEEQRRLWDSNMLIHFVKNGPKPLVWLFVKFVS-LVLFNKAVLWFGGGVPGKQYAL 181
            + PT+E QR ++ + +         +P   L  +FV+ LVL + A LW   GVP  Q A+
Sbjct: 648  STPTLEGQRSIYHTKI---------RPC--LLNRFVNGLVLSSDAFLWSALGVPKNQVAM 696

Query: 182  IKAD--------------------GIPIENYIARTMDGVAENSHVRKQNYFYYNCLTGKF 301
            I+AD                       I +Y   T+D V   SH+   N +Y  C+ G++
Sbjct: 697  IEADYHRRSISSSTTPSSKEKPSRAEAILHYTTSTLDPVLSTSHLASDNPYYLVCVLGQY 756

Query: 302  LRDNCPTYLREAAFATLKS-GVVDNLTVSTNFFMEEL 409
             R   P YL  AA + L + G  D L + T+   E L
Sbjct: 757  TRQCHPDYLSPAAHSILSAPGAFDGLRIHTDEIQEVL 793

 Score = 28.9 bits (63), Expect(2) = 4e-10
 Identities = 17/55 (30%), Positives = 25/55 (44%), Gaps = 10/55 (18%)
 Frame = +3

Query: 435 ILMDHVDWLDMP----------VANELAECLAKQVAPGGIVIWRSASLSPPYAEL 569
           ++MD +DW D P           A E    L + +  GG V+ RSA + P Y  +
Sbjct: 805 VVMDSMDWFDPPSPEEEKEGRGKAREQVRRLNRALKVGGKVLLRSAGVEPWYVRV 859

>ref|NP_863860.1| hypothetical protein [Pirellula sp.] gi|32443012|emb|CAD71533.1|
           hypothetical protein [Pirellula sp.]
          Length = 415

 Score = 47.0 bits (110), Expect(2) = 5e-08
 Identities = 37/129 (28%), Positives = 61/129 (46%), Gaps = 1/129 (0%)
 Frame = +2

Query: 8   APTMEEQRRLWDSNMLIHFVKNGPKPLVWLFVKFVSLVLFNKAVLWFGGGVPGKQY-ALI 184
           A ++++QR ++    +   + +  KPL W   +  +L +          GVP  Q   L 
Sbjct: 173 AESVDQQREIYQKREINRLLWS--KPLRWALRRDTTLAML---------GVPRSQRNQLD 221

Query: 185 KADGIPIENYIARTMDGVAENSHVRKQNYFYYNCLTGKFLRDNCPTYLREAAFATLKSGV 364
           +     I  +I   ++ V +   +R  NYF+   LTG +  D CP YL+E  F  LK+G+
Sbjct: 222 QCYPGGIGGFIQDRIEAVFKTLPLR-DNYFWRVYLTGSYTPDCCPEYLKEENFTELKNGL 280

Query: 365 VDNLTVSTN 391
           VD +   TN
Sbjct: 281 VDCVQTHTN 289

 Score = 31.6 bits (70), Expect(2) = 5e-08
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
 Frame = +3

Query: 420 PTPRLILMDHVDWLDMPVANELA---ECLAKQVAPGGIVIWRSASLS 551
           P  R +L+DH+DWL       LA   + +  +      V+WRSA+L+
Sbjct: 301 PISRFVLLDHMDWLYDRYPELLASEWQSILNRATSDARVLWRSAALA 347

>ref|NP_295856.1| conserved hypothetical protein [Deinococcus radiodurans]
           gi|7471338|pir||B75310 conserved hypothetical protein -
           Deinococcus radiodurans  (strain R1)
           gi|6459930|gb|AAF11681.1|AE002048_1 conserved
           hypothetical protein [Deinococcus radiodurans]
          Length = 528

 Score = 49.3 bits (116), Expect = 4e-05
 Identities = 38/117 (32%), Positives = 54/117 (45%), Gaps = 3/117 (2%)
 Frame = +3

Query: 93  GCSSSS*AWCSSTRPCCGSAAACRASSTR*SRRTASPLRTTSRAPWTAWRRTRTCASRTT 272
           GC  S+   C      C +A  C  +S R    + S    T R+P T+ RR R  ASR +
Sbjct: 392 GCRLSAPRRCRRATKRCRTATGCGRTSPRCGPSSGSCRAATRRSPRTSPRRAR--ASRAS 449

Query: 273 STTTASPASSCATTAPPTCARRPSPPSRVAWWTT*PSPPTSSWRSSKR---APTPRL 434
             T  +PA++ A+ APP      SP  +  W T    P +++   S R   AP PR+
Sbjct: 450 RPTIPAPAANSASAAPPN-----SPTRKTNWSTPGWCPRSAASTPSSRSPGAPPPRV 501

 Score = 33.9 bits (76), Expect = 1.6
 Identities = 37/128 (28%), Positives = 47/128 (35%), Gaps = 6/128 (4%)
 Frame = -1

Query: 383 RRSGCPPRHS*GWRRP--PRAGRWGS---CRAGTCR*GSCSRSSSACARASSPPRR-PWC 222
           RR     R S   RRP  P  G W S   CR    R   C R++  C  A+   R  P C
Sbjct: 364 RRRRPATRPSPSGRRPSTPVTGWWPSATGCRLSAPR--RCRRATKRCRTATGCGRTSPRC 421

Query: 221 ARCSSQWGCRPP*SARTACPARRRRTTARPC*RAPGSRT*RTATPAAWARSSRSG*ACCC 42
              S         S RT+    R    +RP   AP + +   A P +  R +       C
Sbjct: 422 GPSSGSCRAATRRSPRTSPRRARASRASRPTIPAPAANSASAAPPNSPTRKTNWSTPGWC 481

Query: 41  PTDGAAPP 18
           P   A+ P
Sbjct: 482 PRSAASTP 489

>gb|AAK61490.1| glycoprotein gp2 [Equine herpesvirus 4]
          Length = 825

 Score = 48.9 bits (115), Expect = 5e-05
 Identities = 39/128 (30%), Positives = 58/128 (44%)
 Frame = +3

Query: 42  TATCSSTS*RTGPSRWCGCSSSS*AWCSSTRPCCGSAAACRASSTR*SRRTASPLRTTSR 221
           TAT +ST+  T        ++S+    S T     +AA   A++T  +  TA+     + 
Sbjct: 98  TATATSTATPTSTEASTSTTTSTSVSESPTSTTATTAATTTAATTTAATTTAATTTAATT 157

Query: 222 APWTAWRRTRTCASRTTSTTTASPASSCATTAPPTCARRPSPPSRVAWWTT*PSPPTSSW 401
              T    T T A+ T +TTTA+  ++  TTA  T A   +  +  A  TT  +P  SS 
Sbjct: 158 TAATTTAATTTAATTTAATTTAATTTAATTTAATTTAATTTAATTTAATTTAATPTESSE 217

Query: 402 RSSKRAPT 425
            SS  A T
Sbjct: 218 ASSTLAAT 225

 Score = 42.0 bits (97), Expect = 0.006
 Identities = 37/121 (30%), Positives = 51/121 (41%)
 Frame = +3

Query: 12  PQWRSSAVCGTATCSSTS*RTGPSRWCGCSSSS*AWCSSTRPCCGSAAACRASSTR*SRR 191
           P   SS V  T T +ST+            SS+    S+  P    A+    +ST  S  
Sbjct: 77  PTTSSSTVSTTTTSNSTN-----------ESSTATATSTATPTSTEASTSTTTSTSVSE- 124

Query: 192 TASPLRTTSRAPWTAWRRTRTCASRTTSTTTASPASSCATTAPPTCARRPSPPSRVAWWT 371
             SP  TT+    T    T T A+ T +TTTA+  ++  TTA  T A   +  +  A  T
Sbjct: 125 --SPTSTTATTAATTTAATTTAATTTAATTTAATTTAATTTAATTTAATTTAATTTAATT 182

Query: 372 T 374
           T
Sbjct: 183 T 183

 Score = 40.0 bits (92), Expect = 0.023
 Identities = 40/122 (32%), Positives = 58/122 (46%), Gaps = 5/122 (4%)
 Frame = +3

Query: 24  SSAVCGTATCSSTS*RTGPSRWCGCSSSS*AWCSSTRPCCGSAAACRASSTR*SRRTASP 203
           S+    + T SS+S  TGP+     +SSS    +ST+    S     +SST  +  T++ 
Sbjct: 37  STQSASSETNSSSSPTTGPTTTSSQTSSS----NSTQTPSTSQTPTTSSSTVSTTTTSNS 92

Query: 204 LRTTSRAPWTAWRRTRTCASRTTSTTTA-----SPASSCATTAPPTCARRPSPPSRVAWW 368
              +S A  T+   T T    +TSTTT+     SP S+ ATTA  T A   +  +  A  
Sbjct: 93  TNESSTATATS-TATPTSTEASTSTTTSTSVSESPTSTTATTAATTTAATTTAATTTAAT 151

Query: 369 TT 374
           TT
Sbjct: 152 TT 153

>ref|NP_652552.1| CG13990-PA [Drosophila melanogaster] gi|22945747|gb|AAF52351.2|
           CG13990-PA [Drosophila melanogaster]
          Length = 471

 Score = 48.9 bits (115), Expect = 5e-05
 Identities = 39/127 (30%), Positives = 61/127 (47%), Gaps = 3/127 (2%)
 Frame = +3

Query: 27  SAVCGTATCSSTS*RT-GPSRWCGCSSSS*AWCS--STRPCCGSAAACRASSTR*SRRTA 197
           ++V  T TC+ T+  T  P+    C+ ++   C+  +T  C  +     A +T     T 
Sbjct: 133 ASVTTTTTCAPTTTTTCAPTTTTTCAPTTTTTCAPTTTTTCAPTTTTTCAPTTT---TTC 189

Query: 198 SPLRTTSRAPWTAWRRTRTCASRTTSTTTASPASSCATTAPPTCARRPSPPSRVAWWTT* 377
           +P  TT+ AP T    T TCA  TT+T   +  ++CA T   TCA  P+  +  A  TT 
Sbjct: 190 APTTTTTCAPTT----TTTCAPTTTTTCAPTTTTTCAPTTTTTCA--PTTTTTCAPTTTT 243

Query: 378 PSPPTSS 398
              PT++
Sbjct: 244 TCAPTTT 250

 Score = 46.2 bits (108), Expect = 3e-04
 Identities = 36/122 (29%), Positives = 56/122 (45%), Gaps = 3/122 (2%)
 Frame = +3

Query: 42  TATCSSTS*RT-GPSRWCGCSSSS*AWCS--STRPCCGSAAACRASSTR*SRRTASPLRT 212
           T TC+ T+  T  P+    C+ ++   C+  +T  C  +     A +T     T +P  T
Sbjct: 226 TTTCAPTTTTTCAPTTTTTCAPTTTTTCAPTTTTTCAPTTTTTCAPTTT---TTCAPTTT 282

Query: 213 TSRAPWTAWRRTRTCASRTTSTTTASPASSCATTAPPTCARRPSPPSRVAWWTT*PSPPT 392
           T+ AP T    T TCA  TT+T   +  ++CA T   TCA   +        TT  +P T
Sbjct: 283 TTCAPTT----TTTCAPTTTTTCAPTTTTTCAPTTTTTCAPTTTTTCTPGITTTTCTPAT 338

Query: 393 SS 398
           ++
Sbjct: 339 TT 340

 Score = 43.9 bits (102), Expect = 0.002
 Identities = 40/124 (32%), Positives = 60/124 (48%), Gaps = 5/124 (4%)
 Frame = +3

Query: 42  TATCSSTS*RT-GPSRWCGCSSSS*AWCS--STRPCCGSAAACRASSTR*SRRTASPLRT 212
           T TC+ T+  T  P+    C+ ++   C+  +T  C  +     A +T     T +P  T
Sbjct: 162 TTTCAPTTTTTCAPTTTTTCAPTTTTTCAPTTTTTCAPTTTTTCAPTTT---TTCAPTTT 218

Query: 213 TSRAPWTAWRRTRTCASRTTSTTTASP--ASSCATTAPPTCARRPSPPSRVAWWTT*PSP 386
           T+ AP T    T TCA   T+TTT +P   ++CA T   TCA  P+  +  A  TT    
Sbjct: 219 TTCAPTT----TTTCAP--TTTTTCAPTTTTTCAPTTTTTCA--PTTTTTCAPTTTTTCA 270

Query: 387 PTSS 398
           PT++
Sbjct: 271 PTTT 274

 Score = 43.9 bits (102), Expect = 0.002
 Identities = 40/124 (32%), Positives = 60/124 (48%), Gaps = 5/124 (4%)
 Frame = +3

Query: 42  TATCSSTS*RT-GPSRWCGCSSSS*AWCS--STRPCCGSAAACRASSTR*SRRTASPLRT 212
           T TC+ T+  T  P+    C+ ++   C+  +T  C  +     A +T     T +P  T
Sbjct: 194 TTTCAPTTTTTCAPTTTTTCAPTTTTTCAPTTTTTCAPTTTTTCAPTTT---TTCAPTTT 250

Query: 213 TSRAPWTAWRRTRTCASRTTSTTTASP--ASSCATTAPPTCARRPSPPSRVAWWTT*PSP 386
           T+ AP T    T TCA   T+TTT +P   ++CA T   TCA  P+  +  A  TT    
Sbjct: 251 TTCAPTT----TTTCAP--TTTTTCAPTTTTTCAPTTTTTCA--PTTTTTCAPTTTTTCA 302

Query: 387 PTSS 398
           PT++
Sbjct: 303 PTTT 306

 Score = 43.9 bits (102), Expect = 0.002
 Identities = 40/124 (32%), Positives = 60/124 (48%), Gaps = 5/124 (4%)
 Frame = +3

Query: 42  TATCSSTS*RT-GPSRWCGCSSSS*AWCS--STRPCCGSAAACRASSTR*SRRTASPLRT 212
           T TC+ T+  T  P+    C+ ++   C+  +T  C  +     A +T     T +P  T
Sbjct: 202 TTTCAPTTTTTCAPTTTTTCAPTTTTTCAPTTTTTCAPTTTTTCAPTTT---TTCAPTTT 258

Query: 213 TSRAPWTAWRRTRTCASRTTSTTTASP--ASSCATTAPPTCARRPSPPSRVAWWTT*PSP 386
           T+ AP T    T TCA   T+TTT +P   ++CA T   TCA  P+  +  A  TT    
Sbjct: 259 TTCAPTT----TTTCAP--TTTTTCAPTTTTTCAPTTTTTCA--PTTTTTCAPTTTTTCA 310

Query: 387 PTSS 398
           PT++
Sbjct: 311 PTTT 314

 Score = 43.9 bits (102), Expect = 0.002
 Identities = 40/124 (32%), Positives = 60/124 (48%), Gaps = 5/124 (4%)
 Frame = +3

Query: 42  TATCSSTS*RT-GPSRWCGCSSSS*AWCS--STRPCCGSAAACRASSTR*SRRTASPLRT 212
           T TC+ T+  T  P+    C+ ++   C+  +T  C  +     A +T     T +P  T
Sbjct: 170 TTTCAPTTTTTCAPTTTTTCAPTTTTTCAPTTTTTCAPTTTTTCAPTTT---TTCAPTTT 226

Query: 213 TSRAPWTAWRRTRTCASRTTSTTTASP--ASSCATTAPPTCARRPSPPSRVAWWTT*PSP 386
           T+ AP T    T TCA   T+TTT +P   ++CA T   TCA  P+  +  A  TT    
Sbjct: 227 TTCAPTT----TTTCAP--TTTTTCAPTTTTTCAPTTTTTCA--PTTTTTCAPTTTTTCA 278

Query: 387 PTSS 398
           PT++
Sbjct: 279 PTTT 282

 Score = 43.9 bits (102), Expect = 0.002
 Identities = 36/119 (30%), Positives = 55/119 (45%)
 Frame = +3

Query: 42  TATCSSTS*RTGPSRWCGCSSSS*AWCSSTRPCCGSAAACRASSTR*SRRTASPLRTTSR 221
           T TC+  S  T  +    C+ ++   C+ T     +   C  ++T     T +P  TT+ 
Sbjct: 127 TTTCTPASVTTTTT----CAPTTTTTCAPT-----TTTTCAPTTTT----TCAPTTTTTC 173

Query: 222 APWTAWRRTRTCASRTTSTTTASPASSCATTAPPTCARRPSPPSRVAWWTT*PSPPTSS 398
           AP T    T TCA  TT+T   +  ++CA T   TCA  P+  +  A  TT    PT++
Sbjct: 174 APTT----TTTCAPTTTTTCAPTTTTTCAPTTTTTCA--PTTTTTCAPTTTTTCAPTTT 226

 Score = 37.7 bits (86), Expect = 0.11
 Identities = 30/94 (31%), Positives = 44/94 (45%), Gaps = 2/94 (2%)
 Frame = +3

Query: 123 SSTRPCCGSAAA--CRASSTR*SRRTASPLRTTSRAPWTAWRRTRTCASRTTSTTTASPA 296
           S++ P  GS AA  C   +T      A  + TT+     +   T TCA  TT+T   +  
Sbjct: 99  SASSPVGGSIAAVPCAEETTT----CAPQIITTTTCTPASVTTTTTCAPTTTTTCAPTTT 154

Query: 297 SSCATTAPPTCARRPSPPSRVAWWTT*PSPPTSS 398
           ++CA T   TCA  P+  +  A  TT    PT++
Sbjct: 155 TTCAPTTTTTCA--PTTTTTCAPTTTTTCAPTTT 186

 Score = 37.0 bits (84), Expect = 0.19
 Identities = 42/156 (26%), Positives = 64/156 (40%), Gaps = 8/156 (5%)
 Frame = +3

Query: 42  TATCSSTS*RT-GPSRWCGCSSSS*AWCS--STRPCCGSAAACRASSTR*SRRTASPLRT 212
           T TC+ T+  T  P+    C+ ++   C+  +T  C  +     A +T     T +P  T
Sbjct: 258 TTTCAPTTTTTCAPTTTTTCAPTTTTTCAPTTTTTCAPTTTTTCAPTTT---TTCAPTTT 314

Query: 213 TSRAPWTAWR-----RTRTCASRTTSTTTASPASSCATTAPPTCARRPSPPSRVAWWTT* 377
           T+ AP T         T TC   TT+T      +SCA++   T      P S V+  +  
Sbjct: 315 TTCAPTTTTTCTPGITTTTCTPATTTTCVPETTTSCASS---TTTTECGPVSGVSGSS-- 369

Query: 378 PSPPTSSWRSSKRAPTPRLILMDHVDWLDMPVANEL 485
            + P+S      R   P +     +D L  P A EL
Sbjct: 370 KARPSSVKVRPARPVRPAVRPALEIDELSAPKAQEL 405



EST assemble image


clone accession position
1 MXL015a05_r BP093875 1 352
2 LCL086a01_r AV630897 11 272
3 MX002e03_r BP086130 193 572
4 MX209e07_r BP089550 207 456




Chlamydomonas reinhardtii
Kazusa DNA Research Institute