KCC003303A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC003303A_C01 KCC003303A_c01
agacagcacacacgctacctCCACAACCAAACACACACCGGATCATCAACTGCCTCTATT
TGGGCAGTCCATCACGTCCTTCACCGTTTTGAGACGCACCTGTTGCTTTTTTTTGGGCAG
CAACTGGTCGAGCGCGTTAGCTCCCGGCAGCCGGTCCATCGTCTTCACACGACAATTACC
TACGTATTTGCGCCTAGGTGTTGCTAGCGCCAACTCGAGTTCTACCCCAGCAGCAGCGCC
TAGCTCGACCTTCACGGCCGTCAAGGTGACAGCTCTTCCGCTGTGAACGACTGCTCCTTC
CTCGTGGAGCAATTCTCTGCGTAGCCCTGGCCTCCTGCCAACTTTGACCGTGACAAGACA
TCCCTCGGCAGAATGGAGTCCCCGGTCGCGTCACTCGACCTCTGCTCCGACGGCCAAGGC
GCCAAGTGCAAGAGCAAGGCTATTCTGAATCGCAGGCCCAGCG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC003303A_C01 KCC003303A_c01
         (463 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAQ23623.1| GM01353p [Drosophila melanogaster]                      41  0.006
ref|NP_649954.1| CG9461-PA [Drosophila melanogaster] gi|7299263|...    41  0.006
emb|CAC83675.1| mucin 5 [Homo sapiens]                                 40  0.017
pir||T46707 proteophosphoglycan, membrane-associated [imported] ...    39  0.022
ref|XP_146153.2| similar to gastric mucin-like protein [Mus musc...    39  0.028

>gb|AAQ23623.1| GM01353p [Drosophila melanogaster]
          Length = 1124

 Score = 41.2 bits (95), Expect = 0.006
 Identities = 40/151 (26%), Positives = 71/151 (46%), Gaps = 6/151 (3%)
 Frame = +2

Query: 2   DSTHATS--TTKHTPDHQLPLFGQSITSFTVLRRTCCFFLGSNWSS----ALAPGSRSIV 163
           D+T ++   T++ TP    P  G S T+ +   ++ C  +GS+ +S    A A  S S  
Sbjct: 80  DTTESSGAGTSQSTP----PALGASSTTAS---KSTCATVGSSTASTSAAAAAAASASAG 132

Query: 164 FTRQLPTYLRLGVASANSSSTPAAAPSSTFTAVKVTALPL*TTAPSSWSNSLRSPGLLPT 343
            + Q P  LR  +++++    P ++ S+   A  +         PSS S  L +PG  P+
Sbjct: 133 SSHQSPYDLRRKISASSHEQWPTSSSSAVAAAAAILV------GPSSSSPPLVNPGASPS 186

Query: 344 LTVTRHPSAEWSPRSRHSTSAPTAKAPSARA 436
            + +   S+  S  +  S+S+   +APS  A
Sbjct: 187 SSSSSSSSSSSSSSASSSSSSSNVQAPSTSA 217

>ref|NP_649954.1| CG9461-PA [Drosophila melanogaster] gi|7299263|gb|AAF54459.1|
           CG9461-PA [Drosophila melanogaster]
          Length = 1182

 Score = 41.2 bits (95), Expect = 0.006
 Identities = 40/151 (26%), Positives = 71/151 (46%), Gaps = 6/151 (3%)
 Frame = +2

Query: 2   DSTHATS--TTKHTPDHQLPLFGQSITSFTVLRRTCCFFLGSNWSS----ALAPGSRSIV 163
           D+T ++   T++ TP    P  G S T+ +   ++ C  +GS+ +S    A A  S S  
Sbjct: 138 DTTESSGAGTSQSTP----PALGASSTTAS---KSTCATVGSSTASTSAAAAAAASASAG 190

Query: 164 FTRQLPTYLRLGVASANSSSTPAAAPSSTFTAVKVTALPL*TTAPSSWSNSLRSPGLLPT 343
            + Q P  LR  +++++    P ++ S+   A  +         PSS S  L +PG  P+
Sbjct: 191 SSHQSPYDLRRKISASSHEQWPTSSSSAVAAAAAILV------GPSSSSPPLVNPGASPS 244

Query: 344 LTVTRHPSAEWSPRSRHSTSAPTAKAPSARA 436
            + +   S+  S  +  S+S+   +APS  A
Sbjct: 245 SSSSSSSSSSSSSSASSSSSSSNVQAPSTSA 275

>emb|CAC83675.1| mucin 5 [Homo sapiens]
          Length = 1349

 Score = 39.7 bits (91), Expect = 0.017
 Identities = 36/141 (25%), Positives = 59/141 (41%), Gaps = 4/141 (2%)
 Frame = +2

Query: 20   STTKHTPDHQLPLFGQSITSFTVLRRTCCFFLGSNWSSALAPGSRSIVFTRQLPTYLRLG 199
            ST+         L   SITS T    T      +  +S  +  S     T   PT     
Sbjct: 623  STSSWQKSRTTTLVTSSITSTTQTSTTSAPTTSTTPASIPSTTSAPTTSTTSAPTTSTTS 682

Query: 200  VASANSSSTPAAAPSSTFTAVKVTALPL*TTAPSSWSNSLRSPGL----LPTLTVTRHPS 367
              + +++STP    SS  T+   T+ P  +T  +  ++++ +P       PT + T  P+
Sbjct: 683  APTTSTTSTPQTTTSSAPTS-STTSAPTTSTISAPTTSTISAPTTSTTSAPTASTTSAPT 741

Query: 368  AEWSPRSRHSTSAPTAKAPSA 430
            +  S  + ++TSAPT    SA
Sbjct: 742  STSSAPTTNTTSAPTTSTTSA 762

 Score = 32.3 bits (72), Expect = 2.7
 Identities = 37/148 (25%), Positives = 60/148 (40%), Gaps = 7/148 (4%)
 Frame = +2

Query: 5   STHATSTTKHTPDHQLPLFGQSITSFTVLRRTCCFFLGSNWSSALAPG-SRSIVFTRQLP 181
           S  ATS T+ T   Q       +T+ T              S+  AP  S +   T    
Sbjct: 316 SGRATSPTQSTSSWQKSRTTTLVTTSTTSTPQTSTTSAPTTSTTSAPTTSTTSAPTTSTT 375

Query: 182 TYLRLGVASANSSSTPAAAPSSTFTAVKVTALPL*TTA------PSSWSNSLRSPGLLPT 343
           +  +  ++SA +SST +A  SST +A   + +   TT+       S+ S +  S    PT
Sbjct: 376 STPQTSISSAPTSSTTSAPTSSTISARTTSIISAPTTSTTSSPTTSTTSATTTSTTSAPT 435

Query: 344 LTVTRHPSAEWSPRSRHSTSAPTAKAPS 427
            + T  P    +  +  ST++ +   PS
Sbjct: 436 SSTTSTPQTSKTSAATSSTTSSSGTTPS 463

>pir||T46707 proteophosphoglycan, membrane-associated [imported] - Leishmania
           major (fragment) gi|5420389|emb|CAB46680.1|
           proteophosphoglycan [Leishmania major]
          Length = 383

 Score = 39.3 bits (90), Expect = 0.022
 Identities = 36/107 (33%), Positives = 56/107 (51%), Gaps = 6/107 (5%)
 Frame = +2

Query: 128 SSALAPGSRSIV---FTRQLPTYLRLGVASANSSSTPAAAPSSTFTAVKVTALPL*TTAP 298
           SS+ AP S S      +   P+       SA+SSS P+++ SS  +A   +A    ++AP
Sbjct: 29  SSSSAPSSSSSAPSASSSSAPSSSSSSAPSASSSSAPSSSSSSAPSASSSSAPSSSSSAP 88

Query: 299 SSWSNSL-RSPGLLPTLTVTRHPSAEWSPRSRHSTSAP--TAKAPSA 430
           S+ S+S   S    P+ + +  PS+  S  S  S+SAP  ++ APSA
Sbjct: 89  SASSSSAPSSSSSAPSASSSSAPSSSSSAPSASSSSAPSSSSSAPSA 135

 Score = 37.0 bits (84), Expect = 0.11
 Identities = 34/105 (32%), Positives = 53/105 (50%), Gaps = 4/105 (3%)
 Frame = +2

Query: 128 SSALAPGSRSIVFTRQLPTYLRLGVASANSSSTPAA----APSSTFTAVKVTALPL*TTA 295
           SS+ AP S S       P+       S++SSS P+A    APSS+ +A   ++    ++A
Sbjct: 44  SSSSAPSSSS----SSAPSASSSSAPSSSSSSAPSASSSSAPSSSSSAPSASS----SSA 95

Query: 296 PSSWSNSLRSPGLLPTLTVTRHPSAEWSPRSRHSTSAPTAKAPSA 430
           PSS S++  +       + +  PSA  S     S+SAP+A + SA
Sbjct: 96  PSSSSSAPSASSSSAPSSSSSAPSASSSSAPSSSSSAPSASSSSA 140

 Score = 35.8 bits (81), Expect = 0.24
 Identities = 30/82 (36%), Positives = 46/82 (55%), Gaps = 6/82 (7%)
 Frame = +2

Query: 203 ASANSSSTPAA----APSSTFTAVKVTALPL*TTAPSSWSNSL--RSPGLLPTLTVTRHP 364
           A ++SSS P+A    APSS+ +A   ++    ++APSS S+S    S    P+ + +  P
Sbjct: 18  APSSSSSAPSASSSSAPSSSSSAPSASS----SSAPSSSSSSAPSASSSSAPSSSSSSAP 73

Query: 365 SAEWSPRSRHSTSAPTAKAPSA 430
           SA  S     S+SAP+A + SA
Sbjct: 74  SASSSSAPSSSSSAPSASSSSA 95

 Score = 35.4 bits (80), Expect = 0.31
 Identities = 34/105 (32%), Positives = 54/105 (51%), Gaps = 4/105 (3%)
 Frame = +2

Query: 128 SSALAPGSRSIVFTRQLPTYLRLGVASANSSSTPAA----APSSTFTAVKVTALPL*TTA 295
           SS+ AP S S       P+       S++SSS P+A    APSS+ ++    +    ++A
Sbjct: 121 SSSSAPSSSS-----SAPSASSSSAPSSSSSSAPSASSSSAPSSSSSSAPSASS---SSA 172

Query: 296 PSSWSNSLRSPGLLPTLTVTRHPSAEWSPRSRHSTSAPTAKAPSA 430
           PSS S+S       P+ + +  PS+  S  S  S+SAP++ + SA
Sbjct: 173 PSSSSSS------APSASSSSAPSSSSSAPSASSSSAPSSSSSSA 211

 Score = 34.7 bits (78), Expect = 0.53
 Identities = 30/98 (30%), Positives = 50/98 (50%)
 Frame = +2

Query: 128 SSALAPGSRSIVFTRQLPTYLRLGVASANSSSTPAAAPSSTFTAVKVTALPL*TTAPSSW 307
           SS+ AP + S       P+       SA+SSS P+++ SS  +A   +A    ++APS+ 
Sbjct: 144 SSSSAPSASS----SSAPSSSSSSAPSASSSSAPSSSSSSAPSASSSSAPSSSSSAPSAS 199

Query: 308 SNSLRSPGLLPTLTVTRHPSAEWSPRSRHSTSAPTAKA 421
           S+S       P+ + +  PSA  S     S+SAP++ +
Sbjct: 200 SSS------APSSSSSSAPSASSSSAPSSSSSAPSSSS 231

>ref|XP_146153.2| similar to gastric mucin-like protein [Mus musculus]
          Length = 2877

 Score = 38.9 bits (89), Expect = 0.028
 Identities = 47/162 (29%), Positives = 61/162 (37%), Gaps = 21/162 (12%)
 Frame = +2

Query: 5    STHATSTTKHTPDHQLPLFGQSITSFTVLRR---------TCCFFLGSNWSSALAPGSRS 157
            ST   +T K T   Q P+   + TS T             T    L S+ +S L P SRS
Sbjct: 2554 STSLPTTIKGTGTPQTPVSDINTTSATTQAHSSFPTTRTSTSHLSLPSSMTSTLTPASRS 2613

Query: 158  IVFTRQLPT--------YLRLGVASANSSSTPAAAPSSTFTAVKVTALPL*TTAPSSWSN 313
                +  PT         L    AS  SS+    +P++  T +  +ALP     P+  S 
Sbjct: 2614 ASTLQYTPTPSSVSHSPLLTTPTASPPSSAPTFVSPTAASTVIS-SALPTIHMTPTPSSR 2672

Query: 314  SLRSPGLLPTLTVTRH----PSAEWSPRSRHSTSAPTAKAPS 427
               S GLL T   T H     S      + H TS  T  A S
Sbjct: 2673 PTSSTGLLSTSKTTSHVPTFSSFSSKSTTAHLTSLTTQAATS 2714



EST assemble image


clone accession position
1 MXL015g07_r BP093930 1 317
2 MXL075f03_r BP097432 21 390
3 MXL046f12_r BP095742 21 276
4 LCL081d03_r AV630602 73 464
5 MXL029h08_r BP094801 77 303




Chlamydomonas reinhardtii
Kazusa DNA Research Institute