KCC003302A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC003302A_C01 KCC003302A_c01
cttgtgcgtttgtgtgcgacctcactcacacagaaggggaaatggccgctatgcagtcgc
ttcgttcggcaaagtcggtcGCTTCTGTGCGCAGCGAGGCTCAGGTGCCTGCCGCCGTTC
AGCCTCGCGTTGTGGCCAAGCCTCTGCTGGCCGGTCGCCCTGCGGTCGCTGACAGCTCGT
CGCTGCTGGTCGGTCGCGCCGCTCGCCAGATGCTACGCGCCACCGCCGCTCCTCCCTCGC
CGTCGTCGAGCTCGGCGGCCGGCGCGGCGTCCACCGGCAAGCCGCGCGCCCTGATTTCGC
TGTCCGACAAGACCAACCTCGACATGCTCGTCAAGGGCCTGAAGGAGCTGGGCATTGAGA
TTGTGTCGACCGGCGGCACCGCCACCACCATCTCCAACTCGGGTGTGCCTTGCATCAAGG
TCGAGGACGTGACTGGCTTCCCCGAGATGCTGGATGGCCGCGTCAAGACGCTGCACCCCG
CAGTGCACGGCGGCATCCTGGCCATCCGTGACAAGCCCGAGCACATGGCGGCCATTGCGC
AGCACAACATCG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC003302A_C01 KCC003302A_c01
         (552 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAG40879.1|AF321497_1 phosphoribosylaminoimidazolecarboxamide...   123  2e-27
ref|NP_850240.1| phosphoribosylaminoimidazolecarboxamide formylt...   121  5e-27
pir||T00485 probable phosphoribosylaminoimidazolecarboxamide for...   119  3e-26
ref|ZP_00027114.1| COG0138: AICAR transformylase/IMP cyclohydrol...   116  2e-25
ref|NP_283949.1| putative bifunctional purine biosynthesis prote...   115  3e-25

>gb|AAG40879.1|AF321497_1 phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP
           cyclohydrolase [Nicotiana tabacum]
          Length = 612

 Score =  123 bits (308), Expect = 2e-27
 Identities = 67/133 (50%), Positives = 89/133 (66%)
 Frame = +3

Query: 153 GRPAVADSSSLLVGRAARQMLRATAAPPSPSSSSAAGAASTGKPRALISLSDKTNLDMLV 332
           G+   + +S  ++    + M    AAP S   SS     ++G+ +ALISLSDKT+L  L 
Sbjct: 51  GQQQSSKTSHRVMVYPVKAMAETAAAPHSAPKSS-----TSGRKQALISLSDKTDLAKLG 105

Query: 333 KGLKELGIEIVSTGGTATTISNSGVPCIKVEDVTGFPEMLDGRVKTLHPAVHGGILAIRD 512
            GL+ELG  IVSTGGT++ +  +GV   KVE++T FPEMLDGRVKTLHP+VHGGILA RD
Sbjct: 106 NGLQELGYTIVSTGGTSSALEGAGVSVTKVEELTRFPEMLDGRVKTLHPSVHGGILARRD 165

Query: 513 KPEHMAAIAQHNI 551
           +  HM A+ +H I
Sbjct: 166 QEHHMEALEKHEI 178

>ref|NP_850240.1| phosphoribosylaminoimidazolecarboxamide formyltransferase -related
           [Arabidopsis thaliana] gi|20268737|gb|AAM14072.1|
           putative phosphoribosylaminoimidazolecarboxamide
           formyltransferase [Arabidopsis thaliana]
           gi|22136684|gb|AAM91661.1| putative
           phosphoribosylaminoimidazolecarboxamide
           formyltransferase [Arabidopsis thaliana]
          Length = 596

 Score =  121 bits (304), Expect = 5e-27
 Identities = 63/113 (55%), Positives = 79/113 (69%)
 Frame = +3

Query: 213 LRATAAPPSPSSSSAAGAASTGKPRALISLSDKTNLDMLVKGLKELGIEIVSTGGTATTI 392
           +RA A   +   +    + S+G+ +ALISLSDK +L  L  GL+ELG  IVSTGGTA+T+
Sbjct: 49  VRAMAESQTAQRNQPQSSGSSGEKQALISLSDKRDLASLGNGLQELGYTIVSTGGTASTL 108

Query: 393 SNSGVPCIKVEDVTGFPEMLDGRVKTLHPAVHGGILAIRDKPEHMAAIAQHNI 551
            N+GV   KVE +T FPEMLDGRVKTLHP +HGGILA RD   HM A+ +H I
Sbjct: 109 ENAGVSVTKVEKLTHFPEMLDGRVKTLHPNIHGGILARRDVEHHMEALNEHGI 161

>pir||T00485 probable phosphoribosylaminoimidazolecarboxamide formyltransferase
           (EC 2.1.2.3) - Arabidopsis thaliana
           gi|3033398|gb|AAC12842.1| putative
           phosphoribosylaminoimidazolecarboxamide
           formyltransferase [Arabidopsis thaliana]
          Length = 545

 Score =  119 bits (298), Expect = 3e-26
 Identities = 65/110 (59%), Positives = 77/110 (69%)
 Frame = +3

Query: 222 TAAPPSPSSSSAAGAASTGKPRALISLSDKTNLDMLVKGLKELGIEIVSTGGTATTISNS 401
           TA    P SS      S+G+ +ALISLSDK +L  L  GL+ELG  IVSTGGTA+T+ N+
Sbjct: 6   TAQRNQPQSSG-----SSGEKQALISLSDKRDLASLGNGLQELGYTIVSTGGTASTLENA 60

Query: 402 GVPCIKVEDVTGFPEMLDGRVKTLHPAVHGGILAIRDKPEHMAAIAQHNI 551
           GV   KVE +T FPEMLDGRVKTLHP +HGGILA RD   HM A+ +H I
Sbjct: 61  GVSVTKVEKLTHFPEMLDGRVKTLHPNIHGGILARRDVEHHMEALNEHGI 110

>ref|ZP_00027114.1| COG0138: AICAR transformylase/IMP cyclohydrolase PurH (only IMP
           cyclohydrolase domain in Aful) [Ralstonia metallidurans]
          Length = 402

 Score =  116 bits (291), Expect = 2e-25
 Identities = 55/89 (61%), Positives = 70/89 (77%)
 Frame = +3

Query: 285 RALISLSDKTNLDMLVKGLKELGIEIVSTGGTATTISNSGVPCIKVEDVTGFPEMLDGRV 464
           +AL+S+SDKT +    + L  LG+ ++STGGTA  ++ +G+P  +V D TGFPEMLDGRV
Sbjct: 4   QALLSVSDKTGIVDFARELNALGVTLLSTGGTAKLLAEAGLPVTEVADYTGFPEMLDGRV 63

Query: 465 KTLHPAVHGGILAIRDKPEHMAAIAQHNI 551
           KTLHP VHGGILA RD PEHMAA+A+HNI
Sbjct: 64  KTLHPKVHGGILARRDLPEHMAALAEHNI 92

>ref|NP_283949.1| putative bifunctional purine biosynthesis protein [Neisseria
           meningitidis Z2491] gi|32129920|sp|Q9JUQ8|PUR9_NEIMA
           Bifunctional purine biosynthesis protein purH [Includes:
           Phosphoribosylaminoimidazolecarboxamide
           formyltransferase (AICAR transformylase); IMP
           cyclohydrolase (Inosinicase) (IMP synthetase) (ATIC)]
           gi|11257044|pir||H81885 purH bifunctional enzyme NMA1182
           [imported] - Neisseria meningitidis (strain Z2491
           serogroup A) gi|7379874|emb|CAB84444.1| putative
           bifunctional purine biosynthesis protein [Neisseria
           meningitidis Z2491]
          Length = 530

 Score =  115 bits (289), Expect = 3e-25
 Identities = 56/89 (62%), Positives = 69/89 (76%)
 Frame = +3

Query: 285 RALISLSDKTNLDMLVKGLKELGIEIVSTGGTATTISNSGVPCIKVEDVTGFPEMLDGRV 464
           RALISLSDKT      + L +LG+EI+STGGTA  ++++GVP I+V D TGFPEMLDGRV
Sbjct: 6   RALISLSDKTGAVEFAQTLHKLGVEILSTGGTAKLLADAGVPVIEVADYTGFPEMLDGRV 65

Query: 465 KTLHPAVHGGILAIRDKPEHMAAIAQHNI 551
           KTLHP +HGGIL  RD PEH+A + +H I
Sbjct: 66  KTLHPKIHGGILGRRDLPEHVAKMEEHGI 94



EST assemble image


clone accession position
1 LCL081a05_r AV630578 1 223
2 MXL002e07_r BP093041 113 552




Chlamydomonas reinhardtii
Kazusa DNA Research Institute