KCC003294A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC003294A_C01 KCC003294A_c01
ggcgcttcatgggacccgtacgagctcatcgaccgcggcgtcgcagccgcggcggctatg
tcgggtggcgcccgcccacgCTCCACGAAGCAGATGCCGCCGTCACTGGACGGCTTCGGC
TGGTGCACCTGGGACGCGTTCTACTCCACCGTGTCAGCACGCGGGCTGGCCGAGGGCCTG
GCGGCGCTGGAGGCGGGCGGCGTCAGTCCGCAGCTACTCATCATCGATGATGGCTGGCAG
ATGACGGACGTGGACCCGCCCATGCGAAAGACGCCTGCCGCCGACCTGGCGGACAAGCTG
CATGTGGAGGGCGAGCCGCGGCGACTGCTGGAGGCCACACAGGACGAGTTCTTTTATGAG
AGCCAGGAGGTCATGGCGGACGCAGCCGCACACATGCCGCAGGCCGCCGGCACCACACTG
GGCACGGTCATGCCCACACTCGCCAACCTGGGGCCGCAGCACAACGCGCCGCTGCACTCC
CACAGCGGCAGCGTGGCCAGCCTGGACACGCTCGACCTGACCAACAACAACACCATCGCC
AGCCAGAGTCAGGACAACACTGGTACGAGGCCAACCGGTGGCCAGCGCCAGCAGCAGGAC
CGGCCGGCGGCTCCCAGCTCCACCGCGGGGATGGCCACACGCGCGCAGCACGCCGGCGCT
AGCGCCGTGGAGTCCAGCGGCGTCGGTGTGAGCATAACGGAGGCGGTGCGTGCGCGCGAG
GCAGCCGGCGCCAGCACCACTACTCAAGAG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC003294A_C01 KCC003294A_c01
         (750 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_175970.1| glycosyl hydrolase family 36 [Arabidopsis thali...    88  2e-16
gb|AAN32954.1| alkaline alpha-galactosidase seed imbibition prot...    88  2e-16
gb|AAM75140.1| alkaline alpha galactosidase II [Cucumis melo]          87  3e-16
pir||S45033 probable imbibition protein - wild cabbage gi|488787...    87  4e-16
ref|NP_850715.1| glycosyl hydrolase family 36 [Arabidopsis thali...    85  1e-15

>ref|NP_175970.1| glycosyl hydrolase family 36 [Arabidopsis thaliana]
           gi|28416711|gb|AAO42886.1| At1g55740 [Arabidopsis
           thaliana]
          Length = 754

 Score = 87.8 bits (216), Expect = 2e-16
 Identities = 39/84 (46%), Positives = 56/84 (66%)
 Frame = +1

Query: 4   ASWDPYELIDRGVAAAAAMSGGARPRSTKQMPPSLDGFGWCTWDAFYSTVSARGLAEGLA 183
           A  DP+++I + V A          R  K+MP  L+ FGWCTWDAFY+ V+A+ + +GL 
Sbjct: 163 AGSDPFDVITKAVKAVEQHLQTFSHRERKKMPDMLNWFGWCTWDAFYTNVTAKDVKQGLE 222

Query: 184 ALEAGGVSPQLLIIDDGWQMTDVD 255
           +L+AGGV+P+ +IIDDGWQ   +D
Sbjct: 223 SLKAGGVTPKFVIIDDGWQSVGMD 246

>gb|AAN32954.1| alkaline alpha-galactosidase seed imbibition protein [Lycopersicon
           esculentum]
          Length = 756

 Score = 87.8 bits (216), Expect = 2e-16
 Identities = 37/82 (45%), Positives = 53/82 (64%)
 Frame = +1

Query: 13  DPYELIDRGVAAAAAMSGGARPRSTKQMPPSLDGFGWCTWDAFYSTVSARGLAEGLAALE 192
           DP+++I   V            R  K+MP  L+ FGWCTWDAFY+TV++ G+ +GL +LE
Sbjct: 168 DPFDVITNAVKTVERHLQTFCHRDRKKMPDMLNWFGWCTWDAFYTTVTSEGVKQGLESLE 227

Query: 193 AGGVSPQLLIIDDGWQMTDVDP 258
            GG+ P+ ++IDDGWQ   +DP
Sbjct: 228 KGGIPPKFVLIDDGWQSVSMDP 249

>gb|AAM75140.1| alkaline alpha galactosidase II [Cucumis melo]
          Length = 772

 Score = 87.0 bits (214), Expect = 3e-16
 Identities = 39/85 (45%), Positives = 52/85 (60%)
 Frame = +1

Query: 4   ASWDPYELIDRGVAAAAAMSGGARPRSTKQMPPSLDGFGWCTWDAFYSTVSARGLAEGLA 183
           A  +P+E+I + V A    +     R  K++P  LD FGWCTWDAFY+  +A G+ EGL 
Sbjct: 163 AGTNPFEVITQAVKAVEKHTQTFLHREKKKLPSFLDWFGWCTWDAFYTDATAEGVVEGLK 222

Query: 184 ALEAGGVSPQLLIIDDGWQMTDVDP 258
           +L  GG  P+ LIIDDGWQ  +  P
Sbjct: 223 SLSEGGAPPKFLIIDDGWQQIEAKP 247

>pir||S45033 probable imbibition protein - wild cabbage
           gi|488787|emb|CAA55893.1| putative imbibition protein
           [Brassica oleracea]
          Length = 765

 Score = 86.7 bits (213), Expect = 4e-16
 Identities = 39/82 (47%), Positives = 52/82 (62%)
 Frame = +1

Query: 4   ASWDPYELIDRGVAAAAAMSGGARPRSTKQMPPSLDGFGWCTWDAFYSTVSARGLAEGLA 183
           A  +P+E+I + V AA         R  K++P  +D FGWCTWDAFY+ V+A G+ EGL 
Sbjct: 161 AGTNPFEVITQSVKAAERQMQTFHHREKKKLPSFVDWFGWCTWDAFYTDVTAEGVDEGLR 220

Query: 184 ALEAGGVSPQLLIIDDGWQMTD 249
           +L  GG  P+ LIIDDGWQ  +
Sbjct: 221 SLSEGGTPPRFLIIDDGWQQIE 242

>ref|NP_850715.1| glycosyl hydrolase family 36 [Arabidopsis thaliana]
          Length = 656

 Score = 85.1 bits (209), Expect = 1e-15
 Identities = 39/82 (47%), Positives = 51/82 (61%)
 Frame = +1

Query: 4   ASWDPYELIDRGVAAAAAMSGGARPRSTKQMPPSLDGFGWCTWDAFYSTVSARGLAEGLA 183
           A  +P+E+I + V A          R  K++P  LD FGWCTWDAFY+ V+A G+ EGL 
Sbjct: 163 AGTNPFEVIRQSVKAVERHMQTFHHREKKKLPSFLDWFGWCTWDAFYTDVTAEGVDEGLK 222

Query: 184 ALEAGGVSPQLLIIDDGWQMTD 249
           +L  GG  P+ LIIDDGWQ  +
Sbjct: 223 SLSEGGTPPKFLIIDDGWQQIE 244



EST assemble image


clone accession position
1 MXL014f04_r BP093845 1 444
2 LCL078e04_r AV630412 131 654
3 MXL052h06_r BP096111 428 750




Chlamydomonas reinhardtii
Kazusa DNA Research Institute