KCC003292A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC003292A_C01 KCC003292A_c01
ccaggacaatgcacagccaacacgcgcaagcctaaccttaagaacatcgttgtctcccgg
ccagtgcggaccggcgcggtCGCCTGCAGAGCCATGCTTCCTGTCGGTGTTCCCATAAGC
GTCTTGACGGACAGTTACAAGGCGACACACTTCCTGCAATATCCTAAAGCTCAGAAGATG
GTCGCGTATGGCGAGTTCCGTCAAGGATTCAATAAGGATAAGACAGACACACGTTTGGTG
TCCTACGGCATGCGGTACCTAGTTGAAACCTATATCAGCCGGCAGTGGACGATGGAGGAC
GTGGAGATGGCCGACGCGTTCTACCGGACGCATATGGCGCCAAACCACACGGCGTTTCCC
TTCCCGCGCGCCCTCTTCGAGAAGTTCGTGCGGGAAAACAACGGTTTCTTCCCCGTGAAG
TTGGAGACGTTGCCCGAGGGCACTTGTGCACATGTGCGGGTGCCCGTGTACCAGATCACC
GCGGTCGGCGAGTACGCGCCGCTATGCACGTTCTTGGA


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC003292A_C01 KCC003292A_c01
         (518 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|ZP_00123097.1| COG1488: Nicotinic acid phosphoribosyltransfe...    65  4e-10
ref|NP_245936.1| unknown [Pasteurella multocida] gi|12721327|gb|...    64  1e-09
ref|ZP_00133576.1| COG1488: Nicotinic acid phosphoribosyltransfe...    62  3e-09
ref|NP_294017.1| pre-B cell enhancing factor-related protein [De...    62  3e-09
ref|ZP_00034678.1| COG1488: Nicotinic acid phosphoribosyltransfe...    62  3e-09

>ref|ZP_00123097.1| COG1488: Nicotinic acid phosphoribosyltransferase [Haemophilus
           somnus 129PT]
          Length = 465

 Score = 65.5 bits (158), Expect = 4e-10
 Identities = 37/119 (31%), Positives = 65/119 (54%), Gaps = 2/119 (1%)
 Frame = +1

Query: 130 DSYKATHFLQYPKAQKMVAY--GEFRQGFNKDKTDTRLVSYGMRYLVETYISRQWTMEDV 303
           DSYKA+H+LQYPK  + ++Y     R+ F+       +V +G++  ++ Y+ +    +DV
Sbjct: 14  DSYKASHWLQYPKGTEYISYYIEARRESFD-------VVMFGLQAFIKEYLLKPICQQDV 66

Query: 304 EMADAFYRTHMAPNHTAFPFPRALFEKFVRENNGFFPVKLETLPEGTCAHVRVPVYQIT 480
           + A+   + H        PF R  ++  + ++ G+ P+K+E +PEGT   V   V QIT
Sbjct: 67  DEAEIVLKAH------GLPFYRDGWQHLIHKHQGYLPLKIEAVPEGTVLPVGNVVCQIT 119

>ref|NP_245936.1| unknown [Pasteurella multocida] gi|12721327|gb|AAK03083.1| unknown
           [Pasteurella multocida]
          Length = 462

 Score = 63.9 bits (154), Expect = 1e-09
 Identities = 31/106 (29%), Positives = 60/106 (56%)
 Frame = +1

Query: 127 TDSYKATHFLQYPKAQKMVAYGEFRQGFNKDKTDTRLVSYGMRYLVETYISRQWTMEDVE 306
           TDSYKA+H+LQYP   + ++Y    +G N D     ++++G++  ++ Y+ +  +  D++
Sbjct: 13  TDSYKASHWLQYPPNTEYISYYIEARGGNFD-----VLAFGLQAFIKEYLLKPISQNDID 67

Query: 307 MADAFYRTHMAPNHTAFPFPRALFEKFVRENNGFFPVKLETLPEGT 444
            A+     H        PF R  +++ + ++ G  P+K+E +PEGT
Sbjct: 68  EAEVVLTAH------GLPFNRQGWQRLLEKHQGLLPIKIEAVPEGT 107

>ref|ZP_00133576.1| COG1488: Nicotinic acid phosphoribosyltransferase [Haemophilus
           somnus 2336]
          Length = 465

 Score = 62.4 bits (150), Expect = 3e-09
 Identities = 36/119 (30%), Positives = 64/119 (53%), Gaps = 2/119 (1%)
 Frame = +1

Query: 130 DSYKATHFLQYPKAQKMVAY--GEFRQGFNKDKTDTRLVSYGMRYLVETYISRQWTMEDV 303
           DSYKA+H+LQYPK  + ++Y     R+ F+       +V +G++  ++ Y+ +    +DV
Sbjct: 14  DSYKASHWLQYPKGTEYISYYIEARRESFD-------VVMFGLQAFIKEYLLKPICQQDV 66

Query: 304 EMADAFYRTHMAPNHTAFPFPRALFEKFVRENNGFFPVKLETLPEGTCAHVRVPVYQIT 480
           + A+   + H        PF R  ++  + ++ G+ P+K+E + EGT   V   V QIT
Sbjct: 67  DEAEIVLKAH------GLPFYRDGWQHLIHKHQGYLPLKIEAVSEGTVLPVGNVVCQIT 119

>ref|NP_294017.1| pre-B cell enhancing factor-related protein [Deinococcus
           radiodurans] gi|7473356|pir||G75537 pre-B cell enhancing
           factor-related protein - Deinococcus radiodurans (strain
           R1) gi|6457966|gb|AAF09875.1|AE001890_7 pre-B cell
           enhancing factor-related protein [Deinococcus
           radiodurans]
          Length = 462

 Score = 62.4 bits (150), Expect = 3e-09
 Identities = 41/118 (34%), Positives = 64/118 (53%), Gaps = 1/118 (0%)
 Frame = +1

Query: 127 TDSYKATHFLQYPK-AQKMVAYGEFRQGFNKDKTDTRLVSYGMRYLVETYISRQWTMEDV 303
           TDSYK++HFLQYP    ++ +Y E R G       TR   +G++Y++  Y++R+ TME V
Sbjct: 14  TDSYKSSHFLQYPPGTTRLFSYLESRGG---RYPVTRF--FGLQYILSRYLTRRVTMEMV 68

Query: 304 EMADAFYRTHMAPNHTAFPFPRALFEKFVRENNGFFPVKLETLPEGTCAHVRVPVYQI 477
           E A A    H        PFP   + + V  + G  P+++  +PEGT     VP++ +
Sbjct: 69  EEARAVIEAH------GEPFPYEGWRRVVEVHGGKLPLEIRAVPEGTL----VPIHNV 116

>ref|ZP_00034678.1| COG1488: Nicotinic acid phosphoribosyltransferase [Burkholderia
           fungorum]
          Length = 480

 Score = 62.4 bits (150), Expect = 3e-09
 Identities = 41/123 (33%), Positives = 64/123 (51%), Gaps = 1/123 (0%)
 Frame = +1

Query: 127 TDSYKATHFLQY-PKAQKMVAYGEFRQGFNKDKTDTRLVSYGMRYLVETYISRQWTMEDV 303
           TDSYKA+H+LQY P+A  M +Y E R G   D+T    + +G++ L++ Y+ R  T   +
Sbjct: 22  TDSYKASHYLQYPPEASAMFSYIESRGG-RYDRT----LFFGLQMLIKEYLCRPVTPAMI 76

Query: 304 EMADAFYRTHMAPNHTAFPFPRALFEKFVRENNGFFPVKLETLPEGTCAHVRVPVYQITA 483
             A AF+  H        PF  A +   V +  G+ PV++  +PEG+     VP + +  
Sbjct: 77  GQAKAFFTAH------GEPFNEAGWRHVVEQYGGYLPVRIRAVPEGSV----VPTHNVLV 126

Query: 484 VGE 492
             E
Sbjct: 127 TVE 129



EST assemble image


clone accession position
1 LCL078c05_r AV630397 1 518
2 LCL096e08_r AV631587 114 418




Chlamydomonas reinhardtii
Kazusa DNA Research Institute