Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC003290A_C01 KCC003290A_c01
(403 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAC36006.1| bA11M20.1 (TATA box binding protein (TBP)-associ... 49 2e-05
gb|AAC50901.1| TBP-associated factor [Homo sapiens] 49 2e-05
ref|NP_003176.1| TBP-associated factor 4; TATA box binding prote... 49 2e-05
emb|CAD89603.1| putative arabinagalactan protein [Lotus cornicul... 49 2e-05
gb|AAM01038.1|AC091735_11 hypothetical protein [Oryza sativa] gi... 47 5e-05
>emb|CAC36006.1| bA11M20.1 (TATA box binding protein (TBP)-associated factor, RNA
polymerase II, C1, 130kD) [Homo sapiens]
Length = 628
Score = 48.9 bits (115), Expect = 2e-05
Identities = 36/84 (42%), Positives = 40/84 (46%), Gaps = 15/84 (17%)
Frame = -2
Query: 360 PPPPRAR*RAPPPCTPPLPTTTAATLPPPAAP--SGSAGAAPSAATAA------------ 223
PPPP A PP P P T A +PPPAA GSAGAAP+ A AA
Sbjct: 272 PPPPAPATLARPPGHPAGPPTAAPAVPPPAAAQNGGSAGAAPAPAPAAGGPAGVSGQPGP 331
Query: 222 -AACTARRPGLDARCAPCREAQTA 154
AA A PG+ A +P R Q A
Sbjct: 332 GAAAAAPAPGVKAE-SPKRVVQAA 354
Score = 38.5 bits (88), Expect = 0.023
Identities = 25/63 (39%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Frame = -2
Query: 360 PPPPRAR*RAPPPCTPPLPTTTAATLP-PPAAPSGSAGAAPSAATAAAACTARRPGLDAR 184
P PP A A P PP P ATL PP P+G AAP+ AAA G
Sbjct: 255 PSPPAAPAPAAPAAAPPPPPPAPATLARPPGHPAGPPTAAPAVPPPAAAQNGGSAGAAPA 314
Query: 183 CAP 175
AP
Sbjct: 315 PAP 317
Score = 36.6 bits (83), Expect = 0.086
Identities = 23/59 (38%), Positives = 27/59 (44%), Gaps = 4/59 (6%)
Frame = -2
Query: 360 PPPPRAR*RAPPPCTP----PLPTTTAATLPPPAAPSGSAGAAPSAATAAAACTARRPG 196
P PP A+ R PP + P+P A P AP+G A A AA AA A PG
Sbjct: 119 PAPPAAKLRPPPEGSAGSCAPVPAAAAVAAGPEPAPAGPAKPAGPAALAARAGPGPGPG 177
Score = 32.7 bits (73), Expect = 1.2
Identities = 27/87 (31%), Positives = 31/87 (35%), Gaps = 9/87 (10%)
Frame = -2
Query: 387 GRRGRSSIRPPPPRAR-----*RAPPPCTPPLPTTTAATLPPPA----APSGSAGAAPSA 235
G G + PP RAR + P P +P P A PP A P GSAG+
Sbjct: 81 GAPGAAPEPPPAGRARPGGGGPQRPGPPSPRRPLVPAGPAPPAAKLRPPPEGSAGSCAPV 140
Query: 234 ATAAAACTARRPGLDARCAPCREAQTA 154
AAA P P A A
Sbjct: 141 PAAAAVAAGPEPAPAGPAKPAGPAALA 167
Score = 32.0 bits (71), Expect = 2.1
Identities = 26/68 (38%), Positives = 30/68 (43%), Gaps = 7/68 (10%)
Frame = -2
Query: 378 GRSSIRPPPPRAR*RAPPPCTPPLPTTTAATLPPPAAPSGSAGAAPSAATA-------AA 220
G +++ P P A AP P AA P PAAPS A AP+A A A
Sbjct: 221 GPAALLPLPKPA---APGTVIQTPPFVGAAAPPAPAAPSPPAAPAPAAPAAAPPPPPPAP 277
Query: 219 ACTARRPG 196
A AR PG
Sbjct: 278 ATLARPPG 285
Score = 32.0 bits (71), Expect = 2.1
Identities = 27/90 (30%), Positives = 33/90 (36%)
Frame = +2
Query: 119 IHKNVAHPRAHHAVWASRQGAHRASSPGRRAVHAAAAVAALGAAPAEPLGAAGGGSVAAV 298
+ +A AHH A R RA++ G H + P GAAG G A
Sbjct: 29 LESQLAASAAHHHHLAPRTPEVRAAAAGALGNHVVSG---------SPAGAAGAGPAAPA 79
Query: 299 VVGRGGVQGGGARHRARGGGGRILLRPRRP 388
G RAR GGG P+RP
Sbjct: 80 EGAPGAAPEPPPAGRARPGGG----GPQRP 105
>gb|AAC50901.1| TBP-associated factor [Homo sapiens]
Length = 947
Score = 48.9 bits (115), Expect = 2e-05
Identities = 36/84 (42%), Positives = 40/84 (46%), Gaps = 15/84 (17%)
Frame = -2
Query: 360 PPPPRAR*RAPPPCTPPLPTTTAATLPPPAAP--SGSAGAAPSAATAA------------ 223
PPPP A PP P P T A +PPPAA GSAGAAP+ A AA
Sbjct: 134 PPPPAPATLARPPGHPAGPPTAALAVPPPAAAQNGGSAGAAPAPAPAAGGPAGVSGQPGP 193
Query: 222 -AACTARRPGLDARCAPCREAQTA 154
AA A PG+ A +P R Q A
Sbjct: 194 GAAAAAPAPGVKAE-SPKRVVQAA 216
Score = 38.9 bits (89), Expect = 0.017
Identities = 25/67 (37%), Positives = 29/67 (42%), Gaps = 4/67 (5%)
Frame = -2
Query: 384 RRGRSSIRPPPPRAR*RAPPP----CTPPLPTTTAATLPPPAAPSGSAGAAPSAATAAAA 217
+RG P PP A+ R PP P+P A P AP+G A A AA AA A
Sbjct: 7 QRGGRESGPAPPAAKLRPPPEGSAGACAPVPAAAAVAAGPEPAPAGPAKPAGPAALAARA 66
Query: 216 CTARRPG 196
PG
Sbjct: 67 GPGPGPG 73
>ref|NP_003176.1| TBP-associated factor 4; TATA box binding protein (TBP)-associated
factor, RNA polymerase II, C1, 130kD; TAF4 RNA
polymerase II, TATA box binding protein (TBP)-associated
factor, 135 kD; TAF4A RNA polymerase II, TATA box
binding protein (TBP)-associated factor, 135 kD;
transcription initiation factor TFIID 135 kD subunit
[Homo sapiens] gi|3024681|sp|O00268|T2D3_HUMAN
Transcription initiation factor TFIID 135 kDa subunit
(TAFII-135) (TAFII135) (TAFII-130) (TAFII130)
gi|2058326|emb|CAA72189.1| subunit of RNA polymerase II
transcription factor TFIID [Homo sapiens]
Length = 1083
Score = 48.9 bits (115), Expect = 2e-05
Identities = 36/84 (42%), Positives = 40/84 (46%), Gaps = 15/84 (17%)
Frame = -2
Query: 360 PPPPRAR*RAPPPCTPPLPTTTAATLPPPAAP--SGSAGAAPSAATAA------------ 223
PPPP A PP P P T A +PPPAA GSAGAAP+ A AA
Sbjct: 270 PPPPAPATLARPPGHPAGPPTAAPAVPPPAAAQNGGSAGAAPAPAPAAGGPAGVSGQPGP 329
Query: 222 -AACTARRPGLDARCAPCREAQTA 154
AA A PG+ A +P R Q A
Sbjct: 330 GAAAAAPAPGVKAE-SPKRVVQAA 352
Score = 38.5 bits (88), Expect = 0.023
Identities = 25/63 (39%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Frame = -2
Query: 360 PPPPRAR*RAPPPCTPPLPTTTAATLP-PPAAPSGSAGAAPSAATAAAACTARRPGLDAR 184
P PP A A P PP P ATL PP P+G AAP+ AAA G
Sbjct: 253 PSPPAAPAPAAPAAAPPPPPPAPATLARPPGHPAGPPTAAPAVPPPAAAQNGGSAGAAPA 312
Query: 183 CAP 175
AP
Sbjct: 313 PAP 315
Score = 37.0 bits (84), Expect = 0.066
Identities = 23/59 (38%), Positives = 26/59 (43%), Gaps = 4/59 (6%)
Frame = -2
Query: 360 PPPPRAR*RAPPP----CTPPLPTTTAATLPPPAAPSGSAGAAPSAATAAAACTARRPG 196
P PP A+ R PP P+P A P AP+G A A AA AA A PG
Sbjct: 119 PAPPAAKLRPPPEGSAGACAPVPAAAAVAAGPEPAPAGPAKPAGPAALAARAGPGPGPG 177
Score = 33.9 bits (76), Expect = 0.56
Identities = 28/87 (32%), Positives = 31/87 (35%), Gaps = 9/87 (10%)
Frame = -2
Query: 387 GRRGRSSIRPPPPRAR-----*RAPPPCTPPLPTTTAATLPPPA----APSGSAGAAPSA 235
G G + PP RAR + P P +P P A PP A P GSAGA
Sbjct: 81 GAPGAAPEPPPAGRARPGGGGPQRPGPPSPRRPLVPAGPAPPAAKLRPPPEGSAGACAPV 140
Query: 234 ATAAAACTARRPGLDARCAPCREAQTA 154
AAA P P A A
Sbjct: 141 PAAAAVAAGPEPAPAGPAKPAGPAALA 167
Score = 32.0 bits (71), Expect = 2.1
Identities = 26/68 (38%), Positives = 30/68 (43%), Gaps = 7/68 (10%)
Frame = -2
Query: 378 GRSSIRPPPPRAR*RAPPPCTPPLPTTTAATLPPPAAPSGSAGAAPSAATA-------AA 220
G +++ P P A AP P AA P PAAPS A AP+A A A
Sbjct: 219 GPAALLPLPKPA---APGTVIQTPPFVGAAAPPAPAAPSPPAAPAPAAPAAAPPPPPPAP 275
Query: 219 ACTARRPG 196
A AR PG
Sbjct: 276 ATLARPPG 283
Score = 32.0 bits (71), Expect = 2.1
Identities = 27/90 (30%), Positives = 33/90 (36%)
Frame = +2
Query: 119 IHKNVAHPRAHHAVWASRQGAHRASSPGRRAVHAAAAVAALGAAPAEPLGAAGGGSVAAV 298
+ +A AHH A R RA++ G H + P GAAG G A
Sbjct: 29 LESQLAASAAHHHHLAPRTPEVRAAAAGALGNHVVSG---------SPAGAAGAGPAAPA 79
Query: 299 VVGRGGVQGGGARHRARGGGGRILLRPRRP 388
G RAR GGG P+RP
Sbjct: 80 EGAPGAAPEPPPAGRARPGGG----GPQRP 105
>emb|CAD89603.1| putative arabinagalactan protein [Lotus corniculatus var.
japonicus]
Length = 149
Score = 48.5 bits (114), Expect = 2e-05
Identities = 25/62 (40%), Positives = 30/62 (48%)
Frame = -2
Query: 360 PPPPRAR*RAPPPCTPPLPTTTAATLPPPAAPSGSAGAAPSAATAAAACTARRPGLDARC 181
PPPP A APPP TPP T A T PPAA + + P+ A+ A P +
Sbjct: 36 PPPPPAAAPAPPPATPPPAATPAPTTTPPAATPAPSASPPAPTPTASPTGAPTPSASSPP 95
Query: 180 AP 175
AP
Sbjct: 96 AP 97
Score = 33.1 bits (74), Expect = 0.95
Identities = 21/56 (37%), Positives = 25/56 (44%)
Frame = -2
Query: 387 GRRGRSSIRPPPPRAR*RAPPPCTPPLPTTTAATLPPPAAPSGSAGAAPSAATAAA 220
G S + P A +AP PP P AA PPPA P +A AP+ AA
Sbjct: 13 GLLATSCVAQAPGAAPTQAPTTTPPPPP--AAAPAPPPATPPPAATPAPTTTPPAA 66
>gb|AAM01038.1|AC091735_11 hypothetical protein [Oryza sativa] gi|31430937|gb|AAP52782.1|
hypothetical protein [Oryza sativa (japonica
cultivar-group)]
Length = 255
Score = 47.4 bits (111), Expect = 5e-05
Identities = 35/97 (36%), Positives = 44/97 (45%), Gaps = 4/97 (4%)
Frame = +2
Query: 80 RAARQHASGTHHLIHKNV---AHPRAHH-AVWASRQGAHRASSPGRRAVHAAAAVAALGA 247
RA R H SG H ++ AHP +H A WA R + + GR + A AA
Sbjct: 67 RADRVHGSGAHGAASRSTVDRAHPGSHRPAPWAPRV----SRTQGRGRLTAGPHAAATRR 122
Query: 248 APAEPLGAAGGGSVAAVVVGRGGVQGGGARHRARGGG 358
A + AGGG+ A +V G G GG A R G G
Sbjct: 123 ARSHSARPAGGGARAPMVAGGGHRHGGAAAERGEGKG 159
