KCC003289A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC003289A_C01 KCC003289A_c01
ccgagcctgactacctgcgcatgaccgcgctcaaccttcccggcgtgctattcgtgctgg
gtctcgtcttcgctgtggacTACTCGACCGGCTTCGGCGTGACCAAGCTGGTGGAGCTGC
CCGCCCCTTACGGCCCCATCCTTCTCTGGGGCCTGCTGCTGCCCTCGCTGTTCACAGTGG
CCTACGCCCTCACCCAGGTGGGCTTCAAGGACAACCTGATCCTGAAGGCCCCCTGCCCCA
GCTGCGGCTCTGAGAACTTCTCGTACTTCGGTGATGTCTTCACCGTGGCCGGTGCGCGCG
GGCAAAACCTGGTGGAGTGCCCCAACTGCAAGGCGGACATGATCTTTGACGAGTACAAGC
GCGTTGTGGTGGTGGCTGAGACGTCGGAGGTCAAGCAGGAGAAGCTGGCGGCGGCTGCTG
CCAAGAAGGCCGCGGCTGCTGCCAAGAAGAAGGCTAAGGCCGCTGCGTAAAGCGCTCTGG
AGCCTGTGGTTGCCTGGAGCCGTCAGGAGTGCGTGTGGTGCGCACACAGGAGTAC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC003289A_C01 KCC003289A_c01
         (535 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

dbj|BAC92659.1| unknown protein [Oryza sativa (japonica cultivar...   115  4e-25
ref|NP_567672.1| expressed protein [Arabidopsis thaliana] gi|306...   114  1e-24
pir||T05120 hypothetical protein F7H19.70 - Arabidopsis thaliana...   114  1e-24
dbj|BAC42372.1| unknown protein [Arabidopsis thaliana] gi|289508...   111  5e-24
ref|NP_192933.1| hypothetical protein [Arabidopsis thaliana] gi|...   111  5e-24

>dbj|BAC92659.1| unknown protein [Oryza sativa (japonica cultivar-group)]
          Length = 203

 Score =  115 bits (288), Expect = 4e-25
 Identities = 54/127 (42%), Positives = 78/127 (60%)
 Frame = +3

Query: 9   DYLRMTALNLPGVLFVLGLVFAVDYSTGFGVTKLVELPAPYGPILLWGLLLPSLFTVAYA 188
           DY +M  LN+P  +  L L F +D  TGF +T L+ELP P+  I  W   LP +F VA A
Sbjct: 76  DYFKMFMLNVPAAVVALTLFFFLDDLTGFEITYLLELPEPFSFIFTWFAALPLIFWVAQA 135

Query: 189 LTQVGFKDNLILKAPCPSCGSENFSYFGDVFTVAGARGQNLVECPNCKADMIFDEYKRVV 368
           +T    KD LILK PC +CG+EN S+FG + +V     +N V+C NC + +++D   R++
Sbjct: 136 ITSAIVKDFLILKGPCLNCGNENLSFFGTILSVPSGGARNSVKCANCGSSLVYDSASRLI 195

Query: 369 VVAETSE 389
            + ET+E
Sbjct: 196 TLPETAE 202

>ref|NP_567672.1| expressed protein [Arabidopsis thaliana]
           gi|30685973|ref|NP_849422.1| expressed protein
           [Arabidopsis thaliana] gi|30685977|ref|NP_849423.1|
           expressed protein [Arabidopsis thaliana]
           gi|24030260|gb|AAN41305.1| unknown protein [Arabidopsis
           thaliana]
          Length = 324

 Score =  114 bits (284), Expect = 1e-24
 Identities = 51/127 (40%), Positives = 79/127 (62%)
 Frame = +3

Query: 9   DYLRMTALNLPGVLFVLGLVFAVDYSTGFGVTKLVELPAPYGPILLWGLLLPSLFTVAYA 188
           DY +M  LN+P  +  LGL F +D  TGF +T ++ELP PY  I  W   +P +  +A +
Sbjct: 197 DYFKMLLLNVPATVVALGLFFFLDDITGFEITYIMELPEPYSFIFTWFAAVPVIVYLALS 256

Query: 189 LTQVGFKDNLILKAPCPSCGSENFSYFGDVFTVAGARGQNLVECPNCKADMIFDEYKRVV 368
           +T++  KD LILK PCP+CG+EN S+FG + +++     N V+C NC   M++D   R++
Sbjct: 257 ITKLIIKDFLILKGPCPNCGTENTSFFGTILSISSGGKTNTVKCTNCGTAMVYDSGSRLI 316

Query: 369 VVAETSE 389
            + E S+
Sbjct: 317 TLPEGSQ 323

>pir||T05120 hypothetical protein F7H19.70 - Arabidopsis thaliana
           gi|3292814|emb|CAA19804.1| putative protein [Arabidopsis
           thaliana] gi|7269136|emb|CAB79244.1| putative protein
           [Arabidopsis thaliana]
          Length = 340

 Score =  114 bits (284), Expect = 1e-24
 Identities = 51/127 (40%), Positives = 79/127 (62%)
 Frame = +3

Query: 9   DYLRMTALNLPGVLFVLGLVFAVDYSTGFGVTKLVELPAPYGPILLWGLLLPSLFTVAYA 188
           DY +M  LN+P  +  LGL F +D  TGF +T ++ELP PY  I  W   +P +  +A +
Sbjct: 213 DYFKMLLLNVPATVVALGLFFFLDDITGFEITYIMELPEPYSFIFTWFAAVPVIVYLALS 272

Query: 189 LTQVGFKDNLILKAPCPSCGSENFSYFGDVFTVAGARGQNLVECPNCKADMIFDEYKRVV 368
           +T++  KD LILK PCP+CG+EN S+FG + +++     N V+C NC   M++D   R++
Sbjct: 273 ITKLIIKDFLILKGPCPNCGTENTSFFGTILSISSGGKTNTVKCTNCGTAMVYDSGSRLI 332

Query: 369 VVAETSE 389
            + E S+
Sbjct: 333 TLPEGSQ 339

>dbj|BAC42372.1| unknown protein [Arabidopsis thaliana] gi|28950891|gb|AAO63369.1|
           At4g11960 [Arabidopsis thaliana]
          Length = 313

 Score =  111 bits (278), Expect = 5e-24
 Identities = 50/124 (40%), Positives = 77/124 (61%)
 Frame = +3

Query: 9   DYLRMTALNLPGVLFVLGLVFAVDYSTGFGVTKLVELPAPYGPILLWGLLLPSLFTVAYA 188
           DY +M  LN+P  +  LGL F +D  TGF +T L+ELP P+  I  W   +P++  +A +
Sbjct: 186 DYFKMFLLNVPATVVALGLFFFLDDITGFEITYLLELPEPFSFIFTWFAAVPAIVYLALS 245

Query: 189 LTQVGFKDNLILKAPCPSCGSENFSYFGDVFTVAGARGQNLVECPNCKADMIFDEYKRVV 368
           LT++  KD LILK PCP+CG+EN S+FG + ++      N V+C  C  +M++D   R++
Sbjct: 246 LTKLILKDFLILKGPCPNCGTENVSFFGTILSIPNDSNTNNVKCSGCGTEMVYDSGSRLI 305

Query: 369 VVAE 380
            + E
Sbjct: 306 TLPE 309

>ref|NP_192933.1| hypothetical protein [Arabidopsis thaliana] gi|7485578|pir||T06603
           hypothetical protein F16J13.30 - Arabidopsis thaliana
           gi|4586101|emb|CAB40937.1| putative protein [Arabidopsis
           thaliana] gi|7267897|emb|CAB78239.1| putative protein
           [Arabidopsis thaliana]
          Length = 338

 Score =  111 bits (278), Expect = 5e-24
 Identities = 50/124 (40%), Positives = 77/124 (61%)
 Frame = +3

Query: 9   DYLRMTALNLPGVLFVLGLVFAVDYSTGFGVTKLVELPAPYGPILLWGLLLPSLFTVAYA 188
           DY +M  LN+P  +  LGL F +D  TGF +T L+ELP P+  I  W   +P++  +A +
Sbjct: 211 DYFKMFLLNVPATVVALGLFFFLDDITGFEITYLLELPEPFSFIFTWFAAVPAIVYLALS 270

Query: 189 LTQVGFKDNLILKAPCPSCGSENFSYFGDVFTVAGARGQNLVECPNCKADMIFDEYKRVV 368
           LT++  KD LILK PCP+CG+EN S+FG + ++      N V+C  C  +M++D   R++
Sbjct: 271 LTKLILKDFLILKGPCPNCGTENVSFFGTILSIPNDSNTNNVKCSGCGTEMVYDSGSRLI 330

Query: 369 VVAE 380
            + E
Sbjct: 331 TLPE 334



EST assemble image


clone accession position
1 LCL075d06_r AV630208 1 355
2 MXL089a03_r BP098188 172 535




Chlamydomonas reinhardtii
Kazusa DNA Research Institute