>KCC003285A_C01 KCC003285A_c01
cctctcaagccaccgcacgtatcatacaaggttaccaaccacagcgttcgttcacggaag
aatgaaagaatcagtgtccgCAAAACGACCTCACACATTTTAGACTTTTAACTTTGCTAG
TCTAAGCTTGCTATAACCATCATAAGAGCAACAGGTTATTTATGGCAGAGGCAGACGCGC
CAGCAGGCGGGCAGCATGCTTCGACTGAAGACTTGGCCAATAGACTCTTCAAGAACGACA
AATTAGGGATTGGAACCGTTGTGCGTGATCTGGTGGCGCGCACAAAGCAGACTCAGGGTC
AAGCGGTGAACGGAAATGGCAATACGCCGGGAGTCCAGAACGACCTGTTTGTTATCGGAG
GGGCAGAGTCTACCTTTGTGACGCAAGCTGGGCTCACCAGGGTAGTGGTTGACCCTGGCC
CGGACGCGAAACCGGCGAGCATGCCACAGTCAGAACCGGAGGAAAACTTAAAGCTGGAGG
ATAGCGAGGAGCCTGAGAGGGCTAAAGCTCCTCCACCGCGACTGTCTGTGGGCGATGCGG
CTCAAGCGGCCAGTGCCGGAAAGCACCGTGGATGCCGCGGCTGCTGGGCAAGCCTCCACG
ATACGCTTACGGAGCTCTGGGAAATCATCAAGCTTTACCCCAGCACAATTATTGTGCCCC
TGTTCGTCTTCGGCATCATCTGCGGGTTGGGCATCTGGGGCGTCATGGCCGGGGCAGACT
CATACGTGCATCAACAGAAGGACGACGTGCACAGCCATGCAGTGGACGC

BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC003285A_C01 KCC003285A_c01
         (769 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_817893.1| gp42 [Mycobacteriophage Corndog] gi|29425051|gb...    40  0.054
gb|AAP82234.1| ORF1 [Rubella virus]                                    40  0.054
ref|NP_803427.1| p150 [Rubella virus]                                  39  0.12
ref|NP_062883.1| nonstructural polyprotein precursor [Rubella vi...    39  0.12
pir||S38480 nonstructural protein - rubella virus gi|410508|emb|...    39  0.12

>ref|NP_817893.1| gp42 [Mycobacteriophage Corndog] gi|29425051|gb|AAN01974.1| gp42
           [Mycobacteriophage Corndog]
          Length = 82

 Score = 39.7 bits (91), Expect = 0.054
 Identities = 18/57 (31%), Positives = 30/57 (52%)
 Frame = +3

Query: 384 QAGLTRVVVDPGPDAKPASMPQSEPEENLKLEDSEEPERAKAPPPRLSVGDAAQAAS 554
           +A   +   +P P+ KP + P++EPE   + ED  EPE     P R +   +A++ S
Sbjct: 26  RAAAKKAKPEPKPEPKPEAEPEAEPEAEPEAEDKAEPEATPPAPRRAATKSSAKSTS 82

>gb|AAP82234.1| ORF1 [Rubella virus]
          Length = 2116

 Score = 39.7 bits (91), Expect = 0.054
 Identities = 23/61 (37%), Positives = 31/61 (50%)
 Frame = +3

Query: 402  VVVDPGPDAKPASMPQSEPEENLKLEDSEEPERAKAPPPRLSVGDAAQAASAGKHRGCRG 581
            V+V  G  A+  S P +EP  +   +D     +  APPP    GDAA    A + RGC+G
Sbjct: 981  VLVGAGLAARRVSPPPTEPPASRPADDPGRSAQRTAPPPAAPPGDAA----APELRGCQG 1036

Query: 582  C 584
            C
Sbjct: 1037 C 1037

>ref|NP_803427.1| p150 [Rubella virus]
          Length = 1299

 Score = 38.5 bits (88), Expect = 0.12
 Identities = 22/61 (36%), Positives = 31/61 (50%)
 Frame = +3

Query: 402  VVVDPGPDAKPASMPQSEPEENLKLEDSEEPERAKAPPPRLSVGDAAQAASAGKHRGCRG 581
            V+V  G  A+  S P +EP  +    D   P +  A PP   +GD    A+A + RGC+G
Sbjct: 980  VLVGAGLAARRVSPPPTEPLASCPAGDPGRPAQRSASPPATPLGD----ATAPEPRGCQG 1035

Query: 582  C 584
            C
Sbjct: 1036 C 1036

>ref|NP_062883.1| nonstructural polyprotein precursor [Rubella virus]
            gi|130546|sp|P13889|POLN_RUBVT Nonstructural polyprotein
            [Contains: Nonstructural protein NSP1; Nonstructural
            protein NSP2; Nonstructural protein NSP3; Nonstructural
            protein NSP4] gi|74524|pir||MNWVRN nonstructural
            polyprotein - rubella virus (strain Therien)
            gi|333972|gb|AAA88528.1| nonstructural polyprotein
            precursor [Rubella virus]
          Length = 2205

 Score = 38.5 bits (88), Expect = 0.12
 Identities = 22/61 (36%), Positives = 31/61 (50%)
 Frame = +3

Query: 402  VVVDPGPDAKPASMPQSEPEENLKLEDSEEPERAKAPPPRLSVGDAAQAASAGKHRGCRG 581
            V+V  G  A+  S P +EP  +    D   P +  A PP   +GD    A+A + RGC+G
Sbjct: 980  VLVGAGLAARRVSPPPTEPLASCPAGDPGRPAQRSASPPATPLGD----ATAPEPRGCQG 1035

Query: 582  C 584
            C
Sbjct: 1036 C 1036

>pir||S38480 nonstructural protein - rubella virus gi|410508|emb|CAA51087.1|
            unnamed protein product [Rubella virus]
          Length = 2115

 Score = 38.5 bits (88), Expect = 0.12
 Identities = 22/61 (36%), Positives = 31/61 (50%)
 Frame = +3

Query: 402  VVVDPGPDAKPASMPQSEPEENLKLEDSEEPERAKAPPPRLSVGDAAQAASAGKHRGCRG 581
            V+V  G  A+  S P +EP  +    D   P +  A PP   +GD    A+A + RGC+G
Sbjct: 981  VLVGAGLAARRVSPPPTEPLASCPAGDPGRPAQRSASPPATPLGD----ATAPEPRGCQG 1036

Query: 582  C 584
            C
Sbjct: 1037 C 1037

EST assemble image

clone accession position 1 LCL078b07_r AV630390 1 529 2 LCL074a05_r AV630141 382 769

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