Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC003284A_C01 KCC003284A_c01
(591 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAE03119.1| OSJNBa0067K08.27 [Oryza sativa (japonica cultiva... 43 0.003
ref|NP_567903.2| protein kinase family [Arabidopsis thaliana] gi... 41 0.014
ref|XP_346074.1| similar to alpha 3 type VI collagen isoform 1 p... 39 0.041
ref|NP_889647.1| autotransporter [Bordetella bronchiseptica] gi|... 39 0.041
gb|AAL84247.1|AF458047_1 type III effector HopPmaI [Pseudomonas ... 39 0.054
>emb|CAE03119.1| OSJNBa0067K08.27 [Oryza sativa (japonica cultivar-group)]
Length = 508
Score = 43.1 bits (100), Expect = 0.003
Identities = 31/112 (27%), Positives = 39/112 (34%)
Frame = -1
Query: 570 AAAQPRPARASPG*CAPPSTP*APERPSTECPPRTGGDTREGVLPSCRPLLHVQRGSSRC 391
AA PRP + P P+ P +P P PP T P+ +P
Sbjct: 88 AAPAPRPPQPPPATSPAPTKPSSPPAPKPPSPPAPSPSTTPSSPPAPKP----------- 136
Query: 390 RRMRKAK*LHSPPPPTLAPSARLGVRPAD*QKEMRPFKPFNPRTPLSAPPIA 235
S PPP P+ + P+ RP P PRTP PP A
Sbjct: 137 ----------SSPPPAATPTTKPSPPPSS-PPAPRPSPPLPPRTPPPPPPAA 177
Score = 32.3 bits (72), Expect = 5.0
Identities = 21/50 (42%), Positives = 26/50 (52%), Gaps = 8/50 (16%)
Frame = -1
Query: 591 APHSAGTAAAQPRPARASPG*CA--------PPSTP*APERPSTECPPRT 466
AP + T ++ P P +SP A PPS+P AP RPS PPRT
Sbjct: 121 APSPSTTPSSPPAPKPSSPPPAATPTTKPSPPPSSPPAP-RPSPPLPPRT 169
>ref|NP_567903.2| protein kinase family [Arabidopsis thaliana] gi|7486419|pir||T04455
hypothetical protein F4D11.90 - Arabidopsis thaliana
gi|3063699|emb|CAA18590.1| putative protein [Arabidopsis
thaliana] gi|7270175|emb|CAB79988.1| putative protein
kinase [Arabidopsis thaliana]
Length = 731
Score = 40.8 bits (94), Expect = 0.014
Identities = 42/148 (28%), Positives = 57/148 (38%), Gaps = 1/148 (0%)
Frame = -1
Query: 591 APHSAGTAAAQPRPARASPG*CAPPSTP*APERPSTECPPRTGGDTREGVLPSCRPLLHV 412
AP ++ A + P PA + P +PP+ P +P P PP + P L V
Sbjct: 10 APATSPPAMSLP-PADSVPDTSSPPAPPLSPLPPPLSSPPPLPSPPPLSAPTASPPPLPV 68
Query: 411 QRGSSRCRRMRKAK*LHSPPPPTL-APSARLGVRPAD*QKEMRPFKPFNPRTPLSAPPIA 235
+ S L SPPPP L +PS A PF P P P S+PP
Sbjct: 69 ESPPSPPIESPPPPLLESPPPPPLESPSPPSPHVSAPSGSPPLPFLPAKPSPPPSSPP-- 126
Query: 234 IFSTVCCRTFRLGSAGSSPKKASPGSSS 151
T G+ S P ++ P S+
Sbjct: 127 ------SETVPPGNTISPPPRSLPSEST 148
>ref|XP_346074.1| similar to alpha 3 type VI collagen isoform 1 precursor; collagen VI,
alpha-3 polypeptide [Rattus norvegicus]
Length = 3298
Score = 39.3 bits (90), Expect = 0.041
Identities = 34/117 (29%), Positives = 47/117 (40%)
Frame = -1
Query: 588 PHSAGTAAAQPRPARASPG*CAPPSTP*APERPSTECPPRTGGDTREGVLPSCRPLLHVQ 409
P TAAA+P P + + APP T A +P+ PP+T V P+ +HVQ
Sbjct: 2890 PAPPQTAAAKPAPPQTAAAKPAPPQT--AAAKPA---PPQTAAAKPVPVKPAPAQPVHVQ 2944
Query: 408 RGSSRCRRMRKAK*LHSPPPPTLAPSARLGVRPAD*QKEMRPFKPFNPRTPLSAPPI 238
S++ + P P AP +P P KP P P A P+
Sbjct: 2945 SASAQTASAK-------PVPAKPAPPQTAAAKPV-------PVKPAVPAQPAPAQPV 2987
>ref|NP_889647.1| autotransporter [Bordetella bronchiseptica]
gi|33576525|emb|CAE33603.1| autotransporter [Bordetella
bronchiseptica]
Length = 528
Score = 39.3 bits (90), Expect = 0.041
Identities = 32/113 (28%), Positives = 40/113 (35%)
Frame = -1
Query: 579 AGTAAAQPRPARASPG*CAPPSTP*APERPSTECPPRTGGDTREGVLPSCRPLLHVQRGS 400
+G +P PA SPG P P PE S P GGD P P ++
Sbjct: 110 SGDTPPEPPPAPPSPG----PMAPNVPEDASPHLPDHAGGDAMPPASPPAPPEARPKQPE 165
Query: 399 SRCRRMRKAK*LHSPPPPTLAPSARLGVRPAD*QKEMRPFKPFNPRTPLSAPP 241
+R + +A PP P A P Q E P P P + PP
Sbjct: 166 ARPEALPEA-------PPQAQPEA-----PPQAQPEAPPVVPPPAEPPAARPP 206
>gb|AAL84247.1|AF458047_1 type III effector HopPmaI [Pseudomonas syringae pv. maculicola]
Length = 432
Score = 38.9 bits (89), Expect = 0.054
Identities = 37/139 (26%), Positives = 56/139 (39%), Gaps = 5/139 (3%)
Frame = -1
Query: 564 AQPRPARASPG*CAPPSTP*AP--ERPSTE-CPPRTGGDTREGVLPSCRPLLHVQRGSSR 394
A+PRP+ PG + P P RP T PP + R S RP Q+
Sbjct: 224 AEPRPSSGRPGGAQQQARPETPPRSRPQTNSAPPPPRAEPRPA---SGRPGGAQQQARPE 280
Query: 393 CRRMRKAK*LHSPPPPTLAPSARLGVRPAD*QKEMRPFKP--FNPRTPLSAPPIAIFSTV 220
+ + +PPPP P G RP Q++ RP P P+T + PP + +
Sbjct: 281 TPPRSRPQTNSAPPPPKAEPRPSSG-RPGGAQQQARPETPPRSRPQTNNAPPPRSNNTAG 339
Query: 219 CCRTFRLGSAGSSPKKASP 163
+ ++G +G + P
Sbjct: 340 ASASAKVGESGPAKPAVKP 358
Score = 35.4 bits (80), Expect = 0.60
Identities = 36/119 (30%), Positives = 44/119 (36%), Gaps = 3/119 (2%)
Frame = -1
Query: 588 PHSAGTAAAQPRPARASP-G*CAPPSTP*APERPSTECPPRTGGDTREGVLPSCRPLLHV 412
P A A P R P APP P A RPS+ P G ++ P P
Sbjct: 195 PGGAEQQARPETPPRTRPQANGAPPPPPKAEPRPSSGRP----GGAQQQARPETPPRSRP 250
Query: 411 QRGSSRCRRMRKAK*LHSPPPPTLAPSARLGVRPAD*QKEMRPFKP--FNPRTPLSAPP 241
Q S+ PPPP P G RP Q++ RP P P+T + PP
Sbjct: 251 QTNSA-------------PPPPRAEPRPASG-RPGGAQQQARPETPPRSRPQTNSAPPP 295
