KCC003280A_c02
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC003280A_C02 KCC003280A_c02
ctgTGCCTGTGCCTGCTTGCACACAAGCGCTTGTTACAGAGCACCTTACACTGTAACAGC
AACCTTCAATTTCCATCAAGTTGAAGTTTGTATCAATGAATCGATAGAGCGCAGCTGTGT
CGATAGCTGACAGTGAGGCCTGCCAAAGATGTCGCGCGCAAAACACCAGCAGCTCAACAT
CGTGGACAGGCCTCTTACCAAGAATAAGGCAGAGGTGCCCACCGTAAGCTTGAGTGCGTT
TGCGTACCTGTTCAGCGAGTACATCCAATATCTCGTGGACCGGGCAAACAGCATTACTGA
GCTCGAAGAGAGGTTGGAGCGGGTGGGCTACGACGTGGGTGTGCGGGTGCTGGAGCTGCT
GTCGTACCGGGAGAAGTCCCTGCGGCGCAAGACGGATGTGCTGGACATACTCCGACTTCA
TCCACGGCCCCGCCTGGCAGT


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC003280A_C02 KCC003280A_c02
         (441 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAD34459.1|AF136010_1 SPP30 [Solanum chacoense]                     87  5e-17
dbj|BAB39401.1| SPP30 homolog [Oryza sativa (japonica cultivar-g...    84  4e-16
ref|NP_200611.1| SPP30 - like protein [Arabidopsis thaliana] gi|...    82  1e-15
ref|XP_320442.1| ENSANGP00000016974 [Anopheles gambiae] gi|31240...    68  3e-11
ref|NP_610986.1| CG10153-PA [Drosophila melanogaster] gi|7303144...    67  6e-11

>gb|AAD34459.1|AF136010_1 SPP30 [Solanum chacoense]
          Length = 194

 Score = 87.0 bits (214), Expect = 5e-17
 Identities = 47/82 (57%), Positives = 60/82 (72%)
 Frame = +2

Query: 167 QQLNIVDRPLTKNKAEVPTVSLSAFAYLFSEYIQYLVDRANSITELEERLERVGYDVGVR 346
           Q  N+++RPL+K K EV   SLSAFA+LFSE +QY   + ++ITELE RLE  GY VG R
Sbjct: 9   QYSNVLERPLSKGKQEV---SLSAFAFLFSELVQYNQTQVDNITELERRLEDAGYAVGAR 65

Query: 347 VLELLSYREKSLRRKTDVLDIL 412
           +LELL +REK  RR+T +L IL
Sbjct: 66  ILELLCHREKGNRRETRLLGIL 87

>dbj|BAB39401.1| SPP30 homolog [Oryza sativa (japonica cultivar-group)]
           gi|20804659|dbj|BAB92348.1| SPP30 homolog [Oryza sativa
           (japonica cultivar-group)]
          Length = 192

 Score = 84.0 bits (206), Expect = 4e-16
 Identities = 45/82 (54%), Positives = 59/82 (71%)
 Frame = +2

Query: 167 QQLNIVDRPLTKNKAEVPTVSLSAFAYLFSEYIQYLVDRANSITELEERLERVGYDVGVR 346
           Q  N++D+PL++ + EV   SLSAFA+LFSE +QY   + ++I ELE RLE  GY VG R
Sbjct: 9   QYANVLDKPLSRGRQEV---SLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGAR 65

Query: 347 VLELLSYREKSLRRKTDVLDIL 412
           VLELL +REK  RR+T +L IL
Sbjct: 66  VLELLCHREKGNRRETRLLGIL 87

>ref|NP_200611.1| SPP30 - like protein [Arabidopsis thaliana]
           gi|9759528|dbj|BAB10994.1|
           gb|AAD34459.1~gene_id:K21L19.2~similar to unknown
           protein [Arabidopsis thaliana]
           gi|21555061|gb|AAM63766.1| SPP30-like protein
           [Arabidopsis thaliana] gi|28466921|gb|AAO44069.1|
           At5g58030 [Arabidopsis thaliana]
          Length = 195

 Score = 82.4 bits (202), Expect = 1e-15
 Identities = 46/82 (56%), Positives = 58/82 (70%)
 Frame = +2

Query: 167 QQLNIVDRPLTKNKAEVPTVSLSAFAYLFSEYIQYLVDRANSITELEERLERVGYDVGVR 346
           Q  N++D+PL+K K EV   SL+AFA+LFSE +QY   + ++I ELE RLE  GY VG R
Sbjct: 9   QYSNVLDKPLSKGKQEV---SLTAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGSR 65

Query: 347 VLELLSYREKSLRRKTDVLDIL 412
           VLELL  REK  RR+T +L IL
Sbjct: 66  VLELLCNREKGNRRETRLLGIL 87

>ref|XP_320442.1| ENSANGP00000016974 [Anopheles gambiae] gi|31240067|ref|XP_320447.1|
           ENSANGP00000016792 [Anopheles gambiae]
           gi|21288336|gb|EAA00657.1| ENSANGP00000016974 [Anopheles
           gambiae str. PEST] gi|30174087|gb|EAA00628.2|
           ENSANGP00000016792 [Anopheles gambiae str. PEST]
          Length = 191

 Score = 67.8 bits (164), Expect = 3e-11
 Identities = 33/79 (41%), Positives = 57/79 (71%)
 Frame = +2

Query: 176 NIVDRPLTKNKAEVPTVSLSAFAYLFSEYIQYLVDRANSITELEERLERVGYDVGVRVLE 355
           +I+D+PL++ K EV   SLS++A LFSE +QY   R ++I +L+ RL  +G DVG R+++
Sbjct: 15  SILDKPLSRGKGEV---SLSSYALLFSELVQYSQSRVSTIPDLQTRLHDMGKDVGCRIID 71

Query: 356 LLSYREKSLRRKTDVLDIL 412
           L   RE++ +R+T ++++L
Sbjct: 72  LYFVRERNSKRETKLINML 90

>ref|NP_610986.1| CG10153-PA [Drosophila melanogaster] gi|7303144|gb|AAF58209.1|
           CG10153-PA [Drosophila melanogaster]
           gi|16768118|gb|AAL28278.1| GH17639p [Drosophila
           melanogaster]
          Length = 194

 Score = 67.0 bits (162), Expect = 6e-11
 Identities = 36/79 (45%), Positives = 51/79 (63%)
 Frame = +2

Query: 176 NIVDRPLTKNKAEVPTVSLSAFAYLFSEYIQYLVDRANSITELEERLERVGYDVGVRVLE 355
           NI+DRPL+K K EV   S S  A LFSE +QY   R  ++ EL+ RL  +G DVG R+++
Sbjct: 17  NILDRPLSKGKTEV---SQSIVALLFSEIVQYSQSRVFTVPELQTRLHDLGQDVGTRIID 73

Query: 356 LLSYREKSLRRKTDVLDIL 412
           L   RE+S +R+T +  +L
Sbjct: 74  LYFVRERSSKRETKLTQML 92



EST assemble image


clone accession position
1 MX028b08_r BP087208 1 441
2 MX209d09_r BP089542 182 426




Chlamydomonas reinhardtii
Kazusa DNA Research Institute