KCC003279A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC003279A_C01 KCC003279A_c01
aCCCTGACCCGATTGACTGTGTCATAGTTTAGCTGCTCTGGAATTGCGTGCCGAAGTCAG
GTCTCAAAACCAAATTCAACATGGCGACCGCAGCGATGCCCAACCACTCTAAAGCAGCGA
GCTATTGCGAGAAGTTTCTTAAGAACTTTGTGGACGAGTCAAATGATAACGACAAGGAGA
GCATTAAGTATATGGCGCAGCTGCAACAAATTGCCAACCGCAACAGCAAGGTGCTGCGTA
TCGACCTGGATGACGTTGATTCCTTCGTCGAGCAAGACCAGAGCGATGAGCGCTACCCCA
GCTTTGTTGGCGAGCTGGAGCGCAACACGCGCACCTTCCAGCGCCTGTTTGCGGAAGCCG
CCGACCGCCTCATGCCGGCGCCCGACGCACTTGCAAACTCCAAAATGGACGTGTTTGACA
TCCTGTCGGAGCATCGTA


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC003279A_C01 KCC003279A_c01
         (438 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_596545.1| minichromosome maintenance protein mcm7p [Schiz...    59  1e-08
gb|AAC37429.1| contains MCM2/3/5 family signature; PROSITE; PS00...    59  2e-08
ref|NP_192115.1| DNA replication licensing factor Mcm7 (PROLIFER...    59  2e-08
sp|P38132|CC47_YEAST DNA replication licensing factor CDC47 (Cel...    56  1e-07
ref|NP_009761.1| Essential for initiation of DNA replication; Cd...    56  1e-07

>ref|NP_596545.1| minichromosome maintenance protein mcm7p [Schizosaccharomyces
           pombe] gi|12230233|sp|O75001|MCM7_SCHPO DNA replication
           licensing factor mcm7 (Minichromosome maintenance
           protein 7) gi|7490211|pir||T39991 minichromosome
           maintenance protein mcm7p [imported] - fission yeast
           (Schizosaccharomyces pombe) gi|3236468|gb|AAC23693.1|
           minichromosome maintenance protein Mcm7p
           [Schizosaccharomyces pombe] gi|3378510|emb|CAA20099.1|
           SPBC25D12.03c [Schizosaccharomyces pombe]
          Length = 760

 Score = 59.3 bits (142), Expect = 1e-08
 Identities = 33/96 (34%), Positives = 53/96 (54%)
 Frame = +3

Query: 150 VDESNDNDKESIKYMAQLQQIANRNSKVLRIDLDDVDSFVEQDQSDERYPSFVGELERNT 329
           + ++ D      KYM  LQ+I+NR S V+ +DL+D+  F   D SD +    +  +E N 
Sbjct: 43  MSDAGDEPFLKSKYMDILQKISNRESNVINVDLNDLYEF---DPSDTQ---LLHNIESNA 96

Query: 330 RTFQRLFAEAADRLMPAPDALANSKMDVFDILSEHR 437
           + F  LF++ AD LMP P    N + +V D++ + R
Sbjct: 97  KRFVELFSQCADALMPPPTVEINYRNEVLDVIMQQR 132

>gb|AAC37429.1| contains MCM2/3/5 family signature; PROSITE; PS00847; disruption
           leads to early lethal phenotype; similar to MCM2/3/5
           family, most similar to YBR1441
          Length = 716

 Score = 58.9 bits (141), Expect = 2e-08
 Identities = 32/83 (38%), Positives = 51/83 (60%)
 Frame = +3

Query: 135 FLKNFVDESNDNDKESIKYMAQLQQIANRNSKVLRIDLDDVDSFVEQDQSDERYPSFVGE 314
           FL+NF D +  +     KYM  LQ+++NR  + +++DLDD+  F  +D+S+E    F+G 
Sbjct: 16  FLENFADANGRS-----KYMEILQEVSNRKIRAIQVDLDDL--FNYKDESEE----FLGR 64

Query: 315 LERNTRTFQRLFAEAADRLMPAP 383
           L  NTR +  +F+ A D L+P P
Sbjct: 65  LTENTRRYVSIFSAAVDELLPEP 87

>ref|NP_192115.1| DNA replication licensing factor Mcm7 (PROLIFERA) [Arabidopsis
           thaliana] gi|20141757|sp|P43299|PROL_ARATH PROLIFERA
           protein gi|7428561|pir||T01507 replication licensing
           factor MCM7 - Arabidopsis thaliana
           gi|2104530|gb|AAC78698.1| PROLIFERA [Arabidopsis
           thaliana] gi|2104548|gb|AAB57797.1| AGAA.2, PROLIFERA
           [Arabidopsis thaliana] gi|7268590|emb|CAB80699.1|
           PROLIFERA [Arabidopsis thaliana]
          Length = 716

 Score = 58.9 bits (141), Expect = 2e-08
 Identities = 32/83 (38%), Positives = 51/83 (60%)
 Frame = +3

Query: 135 FLKNFVDESNDNDKESIKYMAQLQQIANRNSKVLRIDLDDVDSFVEQDQSDERYPSFVGE 314
           FL+NF D +  +     KYM  LQ+++NR  + +++DLDD+  F  +D+S+E    F+G 
Sbjct: 16  FLENFADANGRS-----KYMEILQEVSNRKIRAIQVDLDDL--FNYKDESEE----FLGR 64

Query: 315 LERNTRTFQRLFAEAADRLMPAP 383
           L  NTR +  +F+ A D L+P P
Sbjct: 65  LTENTRRYVSIFSAAVDELLPEP 87

>sp|P38132|CC47_YEAST DNA replication licensing factor CDC47 (Cell division control
           protein 47) gi|608169|gb|AAA86309.1| Cdc47p
          Length = 845

 Score = 55.8 bits (133), Expect = 1e-07
 Identities = 32/89 (35%), Positives = 47/89 (51%), Gaps = 5/89 (5%)
 Frame = +3

Query: 186 KYMAQLQQIANRNSKVLRIDLDDV-----DSFVEQDQSDERYPSFVGELERNTRTFQRLF 350
           KYMA LQ++ANR    + IDLDD+     + F++  Q+D+     V  +++N   F  LF
Sbjct: 62  KYMAMLQKVANRELNSVIIDLDDILQYQNEKFLQGTQADD----LVSAIQQNANHFTELF 117

Query: 351 AEAADRLMPAPDALANSKMDVFDILSEHR 437
             A D  MP P    + K DV D++   R
Sbjct: 118 CRAIDNNMPLPTKEIDYKDDVLDVILNQR 146

>ref|NP_009761.1| Essential for initiation of DNA replication; Cdc47p [Saccharomyces
           cerevisiae] gi|419857|pir||S34027 replication licensing
           factor MCM7 [validated] - yeast  (Saccharomyces
           cerevisiae) gi|311678|emb|CAA79689.1| unknown
           [Saccharomyces cerevisiae] gi|536577|emb|CAA85166.1|
           CDC47 [Saccharomyces cerevisiae]
          Length = 845

 Score = 55.8 bits (133), Expect = 1e-07
 Identities = 32/89 (35%), Positives = 47/89 (51%), Gaps = 5/89 (5%)
 Frame = +3

Query: 186 KYMAQLQQIANRNSKVLRIDLDDV-----DSFVEQDQSDERYPSFVGELERNTRTFQRLF 350
           KYMA LQ++ANR    + IDLDD+     + F++  Q+D+     V  +++N   F  LF
Sbjct: 62  KYMAMLQKVANRELNSVIIDLDDILQYQNEKFLQGTQADD----LVSAIQQNANHFTELF 117

Query: 351 AEAADRLMPAPDALANSKMDVFDILSEHR 437
             A D  MP P    + K DV D++   R
Sbjct: 118 CRAIDNNMPLPTKEIDYKDDVLDVILNQR 146



EST assemble image


clone accession position
1 LCL094c09_r AV631455 1 323
2 LCL072d08_r AV630066 2 438




Chlamydomonas reinhardtii
Kazusa DNA Research Institute