KCC003278A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC003278A_C01 KCC003278A_c01
gTGAGGTATTCATACCTTCAATTGCATAACCTTGGCGCCTTGGCGGGGCGCTGGAACCCG
AAAGTCGCCCTCGCGCCCTCGGCACTTTAAATATCGACCGCTATAATTCAACCATCTAAT
CAACTAGTTTGTTTGATTCATAGCAAAGATGGAGGCCCCAAAGGCGCCTGCGGAGCCATC
CTGGCCCGGCGTGCTGCGAACCAAGGAGTTCAAGGAGAAGATCAAGTCAGCAAAGGTGCT
GTGCGTGGGCGCTGGCGGCATTGGCTGTGAGCTGCTAAAGACGCTGGTGTGCACGGGTTT
CCGGAACATCGAGGTGATTGACCTTGACACCATTGAGACCTCCAACCTGAACCGCCAGTT
CCTGTTCCGCAAGCACCACGTGGGACAGAGCAAGGCCAACACCGCGGCGGCCGTGGTGCA
AGGCTTCTGCCCCGGCGCCTCCATCACGCCGTACCACGCCAACGTCA


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC003278A_C01 KCC003278A_c01
         (467 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAH55614.1| Unknown (protein for MGC:66354) [Danio rerio]          119  2e-26
gb|AAH43962.1| Similar to SUMO-1 activating enzyme subunit 2 [Xe...   116  1e-25
ref|NP_179742.2| SUMO activating enzyme 2 (SAE2) [Arabidopsis th...   114  6e-25
pir||F84601 probable ubiquitin activating enzyme [imported] - Ar...   114  6e-25
emb|CAB54319.3| C. elegans UBA-2 protein (corresponding sequence...   112  3e-24

>gb|AAH55614.1| Unknown (protein for MGC:66354) [Danio rerio]
          Length = 640

 Score =  119 bits (298), Expect = 2e-26
 Identities = 60/93 (64%), Positives = 71/93 (75%)
 Frame = +2

Query: 188 GVLRTKEFKEKIKSAKVLCVGAGGIGCELLKTLVCTGFRNIEVIDLDTIETSNLNRQFLF 367
           G LR K+  + + S +VL VGAGGIGCELLK LV TGF+NIEVIDLDTI+ SNLNRQFLF
Sbjct: 6   GPLR-KQLADSLSSCRVLVVGAGGIGCELLKNLVLTGFKNIEVIDLDTIDVSNLNRQFLF 64

Query: 368 RKHHVGQSKANTAAAVVQGFCPGASITPYHANV 466
           +K HVG+SKA  A   V  FCP A+IT YH ++
Sbjct: 65  QKKHVGKSKAQVAKESVLRFCPSANITAYHDSI 97

>gb|AAH43962.1| Similar to SUMO-1 activating enzyme subunit 2 [Xenopus laevis]
          Length = 656

 Score =  116 bits (291), Expect = 1e-25
 Identities = 56/88 (63%), Positives = 68/88 (76%)
 Frame = +2

Query: 203 KEFKEKIKSAKVLCVGAGGIGCELLKTLVCTGFRNIEVIDLDTIETSNLNRQFLFRKHHV 382
           KE  E + ++++L VGAGGIGCELLK LV TGF N++VIDLDTI+ SNLNRQFLF+K HV
Sbjct: 24  KEVAEAVSASRLLVVGAGGIGCELLKNLVLTGFTNLDVIDLDTIDVSNLNRQFLFQKKHV 83

Query: 383 GQSKANTAAAVVQGFCPGASITPYHANV 466
           G+SKA  A   V  FCP ASIT YH ++
Sbjct: 84  GRSKAQVAKESVLQFCPDASITAYHDSI 111

>ref|NP_179742.2| SUMO activating enzyme 2 (SAE2) [Arabidopsis thaliana]
           gi|26450535|dbj|BAC42380.1| putative ubiquitin
           activating enzyme [Arabidopsis thaliana]
          Length = 625

 Score =  114 bits (285), Expect = 6e-25
 Identities = 57/91 (62%), Positives = 67/91 (72%)
 Frame = +2

Query: 194 LRTKEFKEKIKSAKVLCVGAGGIGCELLKTLVCTGFRNIEVIDLDTIETSNLNRQFLFRK 373
           + T++ +  IK AKVL VGAGGIGCELLKTL  +GF +I +ID+DTIE SNLNRQFLFR+
Sbjct: 1   MATQQQQSAIKGAKVLMVGAGGIGCELLKTLALSGFEDIHIIDMDTIEVSNLNRQFLFRR 60

Query: 374 HHVGQSKANTAAAVVQGFCPGASITPYHANV 466
            HVGQSKA  A   V  F P  +I  YHANV
Sbjct: 61  SHVGQSKAKVARDAVLRFRPNINIRSYHANV 91

>pir||F84601 probable ubiquitin activating enzyme [imported] - Arabidopsis
           thaliana gi|4567278|gb|AAD23691.1| putative ubiquitin
           activating enzyme [Arabidopsis thaliana]
          Length = 700

 Score =  114 bits (285), Expect = 6e-25
 Identities = 57/91 (62%), Positives = 67/91 (72%)
 Frame = +2

Query: 194 LRTKEFKEKIKSAKVLCVGAGGIGCELLKTLVCTGFRNIEVIDLDTIETSNLNRQFLFRK 373
           + T++ +  IK AKVL VGAGGIGCELLKTL  +GF +I +ID+DTIE SNLNRQFLFR+
Sbjct: 1   MATQQQQSAIKGAKVLMVGAGGIGCELLKTLALSGFEDIHIIDMDTIEVSNLNRQFLFRR 60

Query: 374 HHVGQSKANTAAAVVQGFCPGASITPYHANV 466
            HVGQSKA  A   V  F P  +I  YHANV
Sbjct: 61  SHVGQSKAKVARDAVLRFRPNINIRSYHANV 91

>emb|CAB54319.3| C. elegans UBA-2 protein (corresponding sequence W02A11.4)
           [Caenorhabditis elegans]
          Length = 425

 Score =  112 bits (279), Expect = 3e-24
 Identities = 57/97 (58%), Positives = 67/97 (68%)
 Frame = +2

Query: 176 PSWPGVLRTKEFKEKIKSAKVLCVGAGGIGCELLKTLVCTGFRNIEVIDLDTIETSNLNR 355
           PSW      +E  EKI  +K+L +GAGGIGCELLK L  TGFR + VIDLDTI+ SNLNR
Sbjct: 2   PSW------REKHEKIVQSKILVIGAGGIGCELLKNLAVTGFRKVHVIDLDTIDISNLNR 55

Query: 356 QFLFRKHHVGQSKANTAAAVVQGFCPGASITPYHANV 466
           QFLFRK HV  SKA TA  VV+ FCP   +T  H ++
Sbjct: 56  QFLFRKEHVSSSKAATATQVVKQFCPQIELTFDHDSI 92



EST assemble image


clone accession position
1 LCL071h12_r AV630046 1 337
2 LCL095d04_r AV631513 2 467




Chlamydomonas reinhardtii
Kazusa DNA Research Institute