KCC003273A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC003273A_C01 KCC003273A_c01
caaatgtcagtacaacacggcgacattgGGCGGCAGACTTTTTGATAGAACCTACTGCGT
TCGGTTGCTCCAGCGAGCTTTTAGGGCGCCTAAACTTGCAGAGCTCCCTTCGCAGTGCCC
AAAGAGCCTTCACCTTCGCTAGTTAGCCCTTGGTAAAGTGATTCTGATTCTGCCAGCGTG
CCTGGGGGCCACTTACCGCAAGAAGGGTTTCGCGACATGGCTTCAGCCTCGCTCTTTCAG
ACGTCTGTCCTCAGCCGGAGTGCTTCCAGGGCTGTGGTAAGCCCTGTATGCTCGACTGCG
GCGTTCGTCAGATGCGCCCGCTCCTCAGCAAGCGTTGCGCCCGGAGGATGGACCGCGCGC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC003273A_C01 KCC003273A_c01
         (360 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAH05747.1| Papln protein [Mus musculus]                            33  0.77
emb|CAD79316.1| trypsin inhibitor [Bombina orientalis]                 33  1.3
ref|NP_742310.1| conserved hypothetical protein [Pseudomonas put...    32  2.9
emb|CAD79317.1| trypsin inhibitor [Bombina variegata]                  31  3.8
emb|CAA64330.1| BSTI-precursor [Bombina bombina]                       31  3.8

>gb|AAH05747.1| Papln protein [Mus musculus]
          Length = 484

 Score = 33.5 bits (75), Expect = 0.77
 Identities = 29/85 (34%), Positives = 38/85 (44%), Gaps = 3/85 (3%)
 Frame = +1

Query: 100 RAPFAVPKEPSPSLVSPW*SDSDSASVPGGHLPQEGFRDMASASLFQTSVLSRSASRAVV 279
           +A   +P+ PSPS  SPW  + D A     H+P  G R        +   L R A R  V
Sbjct: 41  KAGATIPRLPSPS-GSPWRREQDPAPGEPPHIPAHGNRPGGQEIRPRIPGLDREA-RPAV 98

Query: 280 SPVCSTAAFVRCARSSASV---APG 345
            P  S +  +R A S  S+   APG
Sbjct: 99  PPTHSPSYRIRLAGSEPSLVQAAPG 123

>emb|CAD79316.1| trypsin inhibitor [Bombina orientalis]
          Length = 84

 Score = 32.7 bits (73), Expect = 1.3
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = +3

Query: 243 VCPQPECFQGCGKPCMLDCGVRQMRPLLSKRCARRMD 353
           VCP  + FQ C   C   C  R    L  K+C +R D
Sbjct: 27  VCPPGQSFQTCASSCPKTCETRNKVVLCDKKCNQRCD 63

>ref|NP_742310.1| conserved hypothetical protein [Pseudomonas putida KT2440]
           gi|24981488|gb|AAN65774.1|AE016203_7 conserved
           hypothetical protein [Pseudomonas putida KT2440]
          Length = 312

 Score = 31.6 bits (70), Expect = 2.9
 Identities = 19/50 (38%), Positives = 32/50 (64%), Gaps = 4/50 (8%)
 Frame = -2

Query: 233 SEAEAMSRNPSCGKWPPGTLAESESLYQG----LTSEGEGSLGTAKGALQ 96
           S AEA+++    GK    TLAE+++L +     L SEG+ ++G+A+ A+Q
Sbjct: 193 SIAEAIAQLVQVGKQASATLAETQALMRNANGLLDSEGKQAIGSAEQAMQ 242

>emb|CAD79317.1| trypsin inhibitor [Bombina variegata]
          Length = 84

 Score = 31.2 bits (69), Expect = 3.8
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = +3

Query: 243 VCPQPECFQGCGKPCMLDCGVRQMRPLLSKRCARR 347
           VCP  + FQ C   C   C  R    L  K+C +R
Sbjct: 27  VCPPGQSFQTCASSCPKTCETRNKLVLCDKKCNQR 61

>emb|CAA64330.1| BSTI-precursor [Bombina bombina]
          Length = 84

 Score = 31.2 bits (69), Expect = 3.8
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = +3

Query: 243 VCPQPECFQGCGKPCMLDCGVRQMRPLLSKRCARR 347
           VCP  + FQ C   C   C  R    L  K+C +R
Sbjct: 27  VCPPGQTFQTCASSCPKTCETRNKLVLCDKKCNQR 61



EST assemble image


clone accession position
1 LCL068f03_r AV629900 1 360
2 MXL030e11_r BP094833 29 319




Chlamydomonas reinhardtii
Kazusa DNA Research Institute