KCC003271A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC003271A_C01 KCC003271A_c01
caAATACATTCCTTTCAACCTATATGGCTGTGGAAGTACACCGTCCGTCTTGCTTTGGGA
GCATGGAGTACCACTCCAACTTCGGGCGTGGAATGCCGCCCCAGGGCTATGGCTACAACC
CTTCTGGGGCCTACCACCAGCAGGGCTACATGGGCCCGCCCATTAACGACTACGCGCGGC
AACACCTGCCCTTGCATCTGCAAAATGGCTACCGAGGACAGCCTGGAGTGCCGCTGCACT
CGCGGCAAGCCTACGGCAGCTATGCCAGCGGGCCGTATGCACCACAGGGACGGCCTCAGC
ACCAGTACAAGGCCCACCACGGTCACAAGAGGCATCGGGGTCAGGACGGGGCGCCTCGGC
TTCAGGAGCTGCGCAGCGACAACGCCAAGAAGGCTCGGGCGCACTACCAAGAGATTCCTG
ACACGCCGGGCGTACCACGTTCCGTGCCTCGCGCTCCCAACAACAACGATGGCATTC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC003271A_C01 KCC003271A_c01
         (477 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAD37783.1|AF148715_1 glucan synthase [Paracoccidioides brasi...    46  2e-04
ref|NP_565114.1| Dhp1-related protein [Arabidopsis thaliana] gi|...    45  3e-04
ref|NP_644315.1| conserved hypothetical protein [Xanthomonas axo...    45  3e-04
pir||D96786 protein F10A5.15 [imported] - Arabidopsis thaliana g...    45  4e-04
sp|P09346|KNOB_PLAFG KNOB-ASSOCIATED HISTIDINE-RICH PROTEIN PREC...    44  7e-04

>gb|AAD37783.1|AF148715_1 glucan synthase [Paracoccidioides brasiliensis]
          Length = 1926

 Score = 46.2 bits (108), Expect = 2e-04
 Identities = 39/125 (31%), Positives = 57/125 (45%), Gaps = 10/125 (8%)
 Frame = +3

Query: 63  MEYHSNFGRGMPPQGYGYNP-SGAYHQQGYMGPPINDYARQHLPLH-----LQNGYRGQP 224
           M  H   GR     GYG+NP + AY+Q GY     NDY+ QH   +       N Y+ Q 
Sbjct: 1   MSAHPQGGRNGYDDGYGHNPQADAYYQDGYYDQ--NDYS-QHDGYYDNRGNGDNSYQPQD 57

Query: 225 GVPLHSRQAY-GSYASGPYAPQGRPQHQYKAHHGHKR-HRGQDGAPRLQE--LRSDNAKK 392
           G   ++ Q Y   Y +  Y  QG   +QY    G +R H  ++ +    +  +RS+ A+ 
Sbjct: 58  GYYDNNHQGYEDEYYNDQYYDQGAAGYQYGPQQGRRRGHDSEEDSETFSDFTMRSETARA 117

Query: 393 ARAHY 407
           A   Y
Sbjct: 118 ADMDY 122

>ref|NP_565114.1| Dhp1-related protein [Arabidopsis thaliana]
            gi|11875628|gb|AAG40732.1|AF286719_1 XRN3 [Arabidopsis
            thaliana]
          Length = 1020

 Score = 45.4 bits (106), Expect = 3e-04
 Identities = 41/137 (29%), Positives = 57/137 (40%), Gaps = 21/137 (15%)
 Frame = +3

Query: 93   MPPQGYGYNPSG-----AYHQQGYMGPPINDYARQHLPLHLQNGYRGQ------PGVPLH 239
            +P  GYGYNP        Y   GYM PP      Q  P   + GY+ +      P  P  
Sbjct: 884  VPAPGYGYNPPQYVPPIPYQHGGYMAPPGAQGYAQPAPYQNRGGYQPRGPSGRFPSEPYQ 943

Query: 240  SRQAYGSYAS--GPYAPQGRPQHQYKAHHG-----HKRHRGQDGAPRLQELRSDNAKKAR 398
            S+   G +AS  G Y+   + QHQ +  HG         RG +G    Q+   D+ ++ R
Sbjct: 944  SQSREGQHASRGGGYSGNHQNQHQQQQWHGQGGSEQNNPRGYNGQHHHQQ-GGDHDRRGR 1002

Query: 399  ---AHYQEIPDTPGVPR 440
               +H+    D  G PR
Sbjct: 1003 GRGSHHHH--DQGGNPR 1017

>ref|NP_644315.1| conserved hypothetical protein [Xanthomonas axonopodis pv. citri
           str. 306] gi|21110426|gb|AAM38851.1| conserved
           hypothetical protein [Xanthomonas axonopodis pv. citri
           str. 306]
          Length = 299

 Score = 45.4 bits (106), Expect = 3e-04
 Identities = 35/101 (34%), Positives = 46/101 (44%), Gaps = 3/101 (2%)
 Frame = +2

Query: 152 GPAH*RLRAATPALASAKWLPRTAWSAAALAASLRQLCQRAVCTTGTASAPVQGPPRSQE 331
           GP+     A TPA  +A   PR+A  AAA  A+        V TT   S+P   PP ++ 
Sbjct: 100 GPSTPTSAAPTPATTAAAEAPRSASEAAAKPAN-------GVATTAAQSSPAPSPPAAER 152

Query: 332 ASGSG---RGASASGAAQRQRQEGSGALPRDS*HAGRTTFR 445
            +  G     A A  A  R R + S A  R+   AG +TFR
Sbjct: 153 CASLGPFAARADADAALARVRGQASRASVREDKDAGISTFR 193

>pir||D96786 protein F10A5.15 [imported] - Arabidopsis thaliana
            gi|9369381|gb|AAF87130.1|AC006434_26 F10A5.15
            [Arabidopsis thaliana]
          Length = 1037

 Score = 45.1 bits (105), Expect = 4e-04
 Identities = 30/92 (32%), Positives = 40/92 (42%), Gaps = 13/92 (14%)
 Frame = +3

Query: 93   MPPQGYGYNPSG-----AYHQQGYMGPPINDYARQHLPLHLQNGYRGQ------PGVPLH 239
            +P  GYGYNP        Y   GYM PP      Q  P   + GY+ +      P  P  
Sbjct: 895  VPAPGYGYNPPQYVPPIPYQHGGYMAPPGAQGYAQPAPYQNRGGYQPRGPSGRFPSEPYQ 954

Query: 240  SRQAYGSYAS--GPYAPQGRPQHQYKAHHGHK 329
            S+   G +AS  G Y+   + QHQ +  HG +
Sbjct: 955  SQSREGQHASRGGGYSGNHQNQHQQQQWHGQE 986

>sp|P09346|KNOB_PLAFG KNOB-ASSOCIATED HISTIDINE-RICH PROTEIN PRECURSOR (KAHRP) (KP)
           gi|84224|pir||A28412 histidine-rich protein precursor -
           malaria parasite  (Plasmodium falciparum)
           gi|160358|gb|AAA29629.1| knob-associated histidine rich
           protein
          Length = 634

 Score = 44.3 bits (103), Expect = 7e-04
 Identities = 38/138 (27%), Positives = 60/138 (42%)
 Frame = +3

Query: 57  GSMEYHSNFGRGMPPQGYGYNPSGAYHQQGYMGPPINDYARQHLPLHLQNGYRGQPGVPL 236
           G++  H N G     +GYGY    A +  G+ G P ++  + ++P H   GY    GVP 
Sbjct: 284 GNLRGHGNKGS----EGYGYE---APYNPGFNGAPGSNGMQNYVPPH-GAGYSAPYGVPH 335

Query: 237 HSRQAYGSYASGPYAPQGRPQHQYKAHHGHKRHRGQDGAPRLQELRSDNAKKARAHYQEI 416
            +  A+GS  S   +     +H  + HH  K+H G DG         +  KK++ H    
Sbjct: 336 GA--AHGSRYSSFSSVNKYGKHGDEKHHSSKKHEGNDG-------EGEKKKKSKKH---- 382

Query: 417 PDTPGVPRSVPRAPNNND 470
            D  G  +   +  +N D
Sbjct: 383 KDHDGEKKKSKKHKDNED 400



EST assemble image


clone accession position
1 LCL067d03_r AV629843 1 477
2 MXL011h06_r BP093674 3 471




Chlamydomonas reinhardtii
Kazusa DNA Research Institute