KCC003270A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC003270A_C01 KCC003270A_c01
AATACTCGATTTCTAAGCACATTGTGAAACACGCAGATAAGCGAAGCAAAGGCAAAAGTC
TTGTCCCCCTGGCCCTGGAGAGCAGGACTGCCTCGCAACCCTTTTAAGTTCAACAGTATC
GTCGCCTGGGACACAAACCTAATCGTGTCTGGGGCAGCTTCCTGGCGACTGGCGACAGCC
CCGTTTGACAGCTCTATTCGCAGCGGCCAAGCGCAAGCTAGCGGTCGCGGCGAGCTAGGG
GCGCCGTTGGAGAGGCGCCCCATGACGTTAAAAAGGACGCGCTTCGGTTTCTCGGCGTGA
GCTGTGCTGGTGCGCAACACGGTCGTGTTGGCGAAGACCCTTACGCGCTGCGCTCTCCCC
CAGGAAGGGGCGTCTCGCGGCTCACCGCGGGAGCTGCCATGGTGCAGCTAGACCAAGTCA
TTGTGAATGGGATAGACTGGGGGATCATTGGCGTGGCGGGCGTGCTGGTGCTCGTGAGTA
CCGTGGGCGCGTTCCTGT


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC003270A_C01 KCC003270A_c01
         (498 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||T29634 hypothetical protein C12D12.1 - Caenorhabditis elegans     39  0.027
ref|NP_508603.1| putative protein, with at least 2 transmembrane...    39  0.027
ref|XP_318717.1| ENSANGP00000004655 [Anopheles gambiae] gi|30174...    37  0.10
gb|AAH16904.1| Unknown (protein for MGC:21034) [Homo sapiens]          37  0.13
ref|NP_075065.1| hypothetical protein 24432 [Homo sapiens] gi|10...    37  0.13

>pir||T29634 hypothetical protein C12D12.1 - Caenorhabditis elegans
          Length = 825

 Score = 39.3 bits (90), Expect = 0.027
 Identities = 33/94 (35%), Positives = 48/94 (50%), Gaps = 10/94 (10%)
 Frame = -3

Query: 487 PTV-LTSTSTPATPMIPQSIPFTMTWSSCTMA-APAVSRE--------TPLPGGERSA*G 338
           PTV +T+T  P++  +P + P T+T ++ T + AP V+          T LP    S  G
Sbjct: 634 PTVPVTTTVVPSSATVPTTPPTTVTVAATTTSKAPVVTTSPTLAPTSPTKLPTSPPSTVG 693

Query: 337 SSPTRPCCAPAQLTPRNRSASFLTSWGASPTAPL 236
           +SPT    APA LT    +    TS   +PTAP+
Sbjct: 694 TSPT----APANLTTPTTAPVNPTSSTTAPTAPV 723

>ref|NP_508603.1| putative protein, with at least 2 transmembrane domains (81.0 kD)
           (XE123) [Caenorhabditis elegans]
           gi|14573793|gb|AAA96080.2| Hypothetical protein
           C12D12.1a [Caenorhabditis elegans]
          Length = 769

 Score = 39.3 bits (90), Expect = 0.027
 Identities = 33/94 (35%), Positives = 48/94 (50%), Gaps = 10/94 (10%)
 Frame = -3

Query: 487 PTV-LTSTSTPATPMIPQSIPFTMTWSSCTMA-APAVSRE--------TPLPGGERSA*G 338
           PTV +T+T  P++  +P + P T+T ++ T + AP V+          T LP    S  G
Sbjct: 578 PTVPVTTTVVPSSATVPTTPPTTVTVAATTTSKAPVVTTSPTLAPTSPTKLPTSPPSTVG 637

Query: 337 SSPTRPCCAPAQLTPRNRSASFLTSWGASPTAPL 236
           +SPT    APA LT    +    TS   +PTAP+
Sbjct: 638 TSPT----APANLTTPTTAPVNPTSSTTAPTAPV 667

>ref|XP_318717.1| ENSANGP00000004655 [Anopheles gambiae] gi|30174516|gb|EAA13969.2|
            ENSANGP00000004655 [Anopheles gambiae str. PEST]
          Length = 3150

 Score = 37.4 bits (85), Expect = 0.10
 Identities = 32/113 (28%), Positives = 52/113 (45%), Gaps = 3/113 (2%)
 Frame = -3

Query: 478  LTSTSTP---ATPMIPQSIPFTMTWSSCTMAAPAVSRETPLPGGERSA*GSSPTRPCCAP 308
            ++S STP    TP   ++ P   T +  TM++   S  TP P        ++PTRP    
Sbjct: 2240 MSSASTPEPSTTPGTTRTTPTRPTPTDTTMSSSMSSASTPEPSTTPGTTRTTPTRPTPTD 2299

Query: 307  AQLTPRNRSASFLTSWGASPTAPLARRDR*LALGRCE*SCQTGLSPVARKLPQ 149
            + ++    SAS   S   S T  L ++D+ L + +C   C+    P+ R  P+
Sbjct: 2300 STMSSSMSSASTPES---STTPELLQQDQHLPIPQCRLVCR---QPLLRSHPR 2346

 Score = 35.8 bits (81), Expect = 0.30
 Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 3/85 (3%)
 Frame = -3

Query: 484  TVLTSTSTP---ATPMIPQSIPFTMTWSSCTMAAPAVSRETPLPGGERSA*GSSPTRPCC 314
            T ++S STP    TP   ++ P   T +  TM++   S  TP P        ++PTRP  
Sbjct: 2670 TTMSSASTPEPSTTPGTTRTTPTRPTSTDSTMSSSMSSASTPEPSTTPGTTRTTPTRP-- 2727

Query: 313  APAQLTPRNRSASFLTSWGASPTAP 239
             P   T  +  +S  T+ G + T P
Sbjct: 2728 TPTDSTMSSSMSSASTTPGTTRTTP 2752

 Score = 35.8 bits (81), Expect = 0.30
 Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 3/85 (3%)
 Frame = -3

Query: 484  TVLTSTSTP---ATPMIPQSIPFTMTWSSCTMAAPAVSRETPLPGGERSA*GSSPTRPCC 314
            T ++S STP    TP   ++ P   T +  TM++   S  TP P        ++PTRP  
Sbjct: 2112 TTMSSASTPEPSTTPGTTRTTPTRPTSTDSTMSSSMSSASTPEPSTTPGTTRTTPTRP-- 2169

Query: 313  APAQLTPRNRSASFLTSWGASPTAP 239
             P   T  +  +S  T+ G + T P
Sbjct: 2170 TPTDSTMSSSMSSASTTPGTTRTTP 2194

 Score = 34.7 bits (78), Expect = 0.66
 Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 3/83 (3%)
 Frame = -3

Query: 484  TVLTSTSTP---ATPMIPQSIPFTMTWSSCTMAAPAVSRETPLPGGERSA*GSSPTRPCC 314
            T ++S STP    TP   ++ P   T +  TM++   S  TP P        ++PTRP  
Sbjct: 3047 TTMSSASTPEPSTTPGTTRTTPTRPTPTDSTMSSSMSSASTPEPSTTPGTTRTTPTRPAT 3106

Query: 313  APAQLTPRNRSASFLTSWGASPT 245
              +   P + S + +T+   + T
Sbjct: 3107 TSSSRNPSSTSWTTVTNRSTTRT 3129

 Score = 33.9 bits (76), Expect = 1.1
 Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 3/85 (3%)
 Frame = -3

Query: 484  TVLTSTSTP---ATPMIPQSIPFTMTWSSCTMAAPAVSRETPLPGGERSA*GSSPTRPCC 314
            T ++S STP    TP   ++ P   T +  TM++   S  TP P        ++PTRP  
Sbjct: 2577 TTMSSASTPEPSTTPGTTRTTPTRPTSTDTTMSSSMSSASTPEPSTTPGTTRTTPTRP-- 2634

Query: 313  APAQLTPRNRSASFLTSWGASPTAP 239
             P   T  +  +S   + G + T P
Sbjct: 2635 TPTDSTMSSSMSSASATPGTTRTTP 2659

 Score = 33.9 bits (76), Expect = 1.1
 Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 3/83 (3%)
 Frame = -3

Query: 478  LTSTSTP---ATPMIPQSIPFTMTWSSCTMAAPAVSRETPLPGGERSA*GSSPTRPCCAP 308
            ++S STP    TP   ++ P   T +  TM++   S  TP P        ++PTRP   P
Sbjct: 2798 MSSASTPEPSTTPGTTRTTPTRPTPTDSTMSSSMSSASTPEPSTTPGTTRTTPTRP--TP 2855

Query: 307  AQLTPRNRSASFLTSWGASPTAP 239
               T  +  +S  T+ G + T P
Sbjct: 2856 TDSTMSSSMSSVSTTPGTTRTTP 2878

 Score = 32.7 bits (73), Expect = 2.5
 Identities = 26/88 (29%), Positives = 40/88 (44%), Gaps = 6/88 (6%)
 Frame = -3

Query: 484  TVLTSTSTP---ATPMIPQSIPFTMTWSSCTMAAPAVSRETPLPGGERSA*GSSPTRPCC 314
            T ++S STP    TP   ++ P   T +  TM++   S  TP P        ++PTRP  
Sbjct: 2763 TTMSSASTPEPSTTPGTTRTTPTRPTPTDTTMSSSMSSASTPEPSTTPGTTRTTPTRPTP 2822

Query: 313  APAQLTPRNRSASF---LTSWGASPTAP 239
              + ++    SAS     T+ G + T P
Sbjct: 2823 TDSTMSSSMSSASTPEPSTTPGTTRTTP 2850

 Score = 32.3 bits (72), Expect = 3.3
 Identities = 26/88 (29%), Positives = 39/88 (43%), Gaps = 6/88 (6%)
 Frame = -3

Query: 484  TVLTSTSTP---ATPMIPQSIPFTMTWSSCTMAAPAVSRETPLPGGERSA*GSSPTRPCC 314
            T ++S STP    TP   ++ P   T +  TM++   S  TP P        ++PTRP  
Sbjct: 2205 TTMSSASTPEPSTTPGTTRTTPTRPTPTDSTMSSSMSSASTPEPSTTPGTTRTTPTRPTP 2264

Query: 313  APAQLTPRNRSASF---LTSWGASPTAP 239
                ++    SAS     T+ G + T P
Sbjct: 2265 TDTTMSSSMSSASTPEPSTTPGTTRTTP 2292

 Score = 31.2 bits (69), Expect = 7.3
 Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 6/86 (6%)
 Frame = -3

Query: 478  LTSTSTP---ATPMIPQSIPFTMTWSSCTMAAPAVSRETPLPGGERSA*GSSPTRPCCAP 308
            ++S STP    TP   ++ P   T +  TM++   S  TP P        ++PTRP    
Sbjct: 2892 MSSASTPEPSTTPGTTRTTPTRPTPTDSTMSSSMSSASTPEPSTTPGTTRTTPTRPTPTD 2951

Query: 307  AQLTPRNRSASF---LTSWGASPTAP 239
            + ++    SAS     T+ G + T P
Sbjct: 2952 STMSSSMSSASTPEPTTTPGTTRTTP 2977

>gb|AAH16904.1| Unknown (protein for MGC:21034) [Homo sapiens]
          Length = 544

 Score = 37.0 bits (84), Expect = 0.13
 Identities = 34/102 (33%), Positives = 49/102 (47%)
 Frame = -3

Query: 475 TSTSTPATPMIPQSIPFTMTWSSCTMAAPAVSRETPLPGGERSA*GSSPTRPCCAPAQLT 296
           +S S+  TP +P  +    + +S ++  PA+S   P PG +RS+   SP   C APA LT
Sbjct: 357 SSPSSSGTPALPGHMSSEESGTSISLL-PALSLAAPDPG-QRSSSQPSPAI-CSAPATLT 413

Query: 295 PRNRSASFLTSWGASPTAPLARRDR*LALGRCE*SCQTGLSP 170
           PR+  AS       +P++PL              SC   LSP
Sbjct: 414 PRSPHAS------RTPSSPLQ-------------SCTPSLSP 436

>ref|NP_075065.1| hypothetical protein 24432 [Homo sapiens]
           gi|10435745|dbj|BAB14658.1| unnamed protein product
           [Homo sapiens]
          Length = 541

 Score = 37.0 bits (84), Expect = 0.13
 Identities = 34/102 (33%), Positives = 49/102 (47%)
 Frame = -3

Query: 475 TSTSTPATPMIPQSIPFTMTWSSCTMAAPAVSRETPLPGGERSA*GSSPTRPCCAPAQLT 296
           +S S+  TP +P  +    + +S ++  PA+S   P PG +RS+   SP   C APA LT
Sbjct: 354 SSPSSSGTPALPGHMSSEESGTSISLL-PALSLAAPDPG-QRSSSQPSPAI-CSAPATLT 410

Query: 295 PRNRSASFLTSWGASPTAPLARRDR*LALGRCE*SCQTGLSP 170
           PR+  AS       +P++PL              SC   LSP
Sbjct: 411 PRSPHAS------RTPSSPLQ-------------SCTPSLSP 433



EST assemble image


clone accession position
1 LCL067c04_r AV629837 1 497
2 LCL100h12_r AV631862 1 498




Chlamydomonas reinhardtii
Kazusa DNA Research Institute