KCC003269A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC003269A_C01 KCC003269A_c01
caCTGAAACACACCCTTGCACCCGCCCCCTCCATTTTCCTGATGAGTACCGCACCTTGAA
GACCGTGTGAAAGATCATTTCGAGTTGACGCGACTAGGCCTGACCGAGCCTCAATAAATA
TGAGGCTCCTAGTTGCCTGTGCTCTATTGGCACTACTGCAGCTCAGCGCTGCAGTGCGCC
TGCCCGCGGCGATAGAGCAGGCTGTGGGGAGGCAGCTCCTGAGCGAGAAGGACCATAGCT
ACCAGCCTGATGACAAGGTGCCGCTGTGGGCTAGCAAGGTTGGACCCTTCACCAACCCCA
GCGAGACATACGAGTATTACAGCCTTCCTTACTGCCAGCCTAAGGATGGCGTGAAGCACA
AGCTGCTGGGCATGGGCGAGGTGGTCGACGCAAACCGCATGGCCAGCACCCCCTACCAGC
TGCAGTTCCGCAAGAACCGCCAGCGCGAGGCGGTCTGCGAGCAGCTTCTGGATCAGGAGA
AGC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC003269A_C01 KCC003269A_c01
         (483 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAF63170.1|AC010657_6 T5E21.15 [Arabidopsis thaliana]               96  2e-19
ref|NP_172919.1| endomembrane protein 70, putative [Arabidopsis ...    96  2e-19
pir||H86280 protein F10B6.2 [imported] - Arabidopsis thaliana gi...    96  2e-19
ref|NP_178306.1| endomembrane protein 70, putative [Arabidopsis ...    96  2e-19
pir||D86243 hypothetical protein [imported] - Arabidopsis thalia...    96  3e-19

>gb|AAF63170.1|AC010657_6 T5E21.15 [Arabidopsis thaliana]
          Length = 546

 Score = 96.3 bits (238), Expect = 2e-19
 Identities = 49/111 (44%), Positives = 67/111 (60%), Gaps = 8/111 (7%)
 Frame = +3

Query: 174 VRLPAAIEQAVGRQLLS--------EKDHSYQPDDKVPLWASKVGPFTNPSETYEYYSLP 329
           +R P  I   VG  L S          DH Y+  D VPL+A+KVGPF NPSETY Y+ LP
Sbjct: 1   MRTPTTILLLVGAILFSGAGYVRSDASDHRYKEGDTVPLYANKVGPFHNPSETYRYFDLP 60

Query: 330 YCQPKDGVKHKLLGMGEVVDANRMASTPYQLQFRKNRQREAVCEQLLDQEK 482
           +C P +GVK K   +GEV++ +R+ S PY+L FR  ++ E  C + L +E+
Sbjct: 61  FCIP-EGVKEKKEALGEVLNGDRLVSAPYKLNFRDEKESEVYCNKKLSKEE 110

>ref|NP_172919.1| endomembrane protein 70, putative [Arabidopsis thaliana]
           gi|15450755|gb|AAK96649.1| T5E21.14/T5E21.14
           [Arabidopsis thaliana] gi|20334722|gb|AAM16222.1|
           At1g14670/T5E21.14 [Arabidopsis thaliana]
          Length = 592

 Score = 96.3 bits (238), Expect = 2e-19
 Identities = 49/111 (44%), Positives = 67/111 (60%), Gaps = 8/111 (7%)
 Frame = +3

Query: 174 VRLPAAIEQAVGRQLLS--------EKDHSYQPDDKVPLWASKVGPFTNPSETYEYYSLP 329
           +R P  I   VG  L S          DH Y+  D VPL+A+KVGPF NPSETY Y+ LP
Sbjct: 1   MRTPTTILLLVGAILFSGAGYVRSDASDHRYKEGDTVPLYANKVGPFHNPSETYRYFDLP 60

Query: 330 YCQPKDGVKHKLLGMGEVVDANRMASTPYQLQFRKNRQREAVCEQLLDQEK 482
           +C P +GVK K   +GEV++ +R+ S PY+L FR  ++ E  C + L +E+
Sbjct: 61  FCIP-EGVKEKKEALGEVLNGDRLVSAPYKLNFRDEKESEVYCNKKLSKEE 110

>pir||H86280 protein F10B6.2 [imported] - Arabidopsis thaliana
           gi|8778207|gb|AAF79216.1|AC006917_1 F10B6.2 [Arabidopsis
           thaliana]
          Length = 260

 Score = 96.3 bits (238), Expect = 2e-19
 Identities = 49/111 (44%), Positives = 67/111 (60%), Gaps = 8/111 (7%)
 Frame = +3

Query: 174 VRLPAAIEQAVGRQLLS--------EKDHSYQPDDKVPLWASKVGPFTNPSETYEYYSLP 329
           +R P  I   VG  L S          DH Y+  D VPL+A+KVGPF NPSETY Y+ LP
Sbjct: 1   MRTPTTILLLVGAILFSGAGYVRSDASDHRYKEGDTVPLYANKVGPFHNPSETYRYFDLP 60

Query: 330 YCQPKDGVKHKLLGMGEVVDANRMASTPYQLQFRKNRQREAVCEQLLDQEK 482
           +C P +GVK K   +GEV++ +R+ S PY+L FR  ++ E  C + L +E+
Sbjct: 61  FCIP-EGVKEKKEALGEVLNGDRLVSAPYKLNFRDEKESEVYCNKKLSKEE 110

>ref|NP_178306.1| endomembrane protein 70, putative [Arabidopsis thaliana]
           gi|25346718|pir||D84431 probable endosomal protein
           [imported] - Arabidopsis thaliana
           gi|4406780|gb|AAD20090.1| putative endosomal protein
           [Arabidopsis thaliana] gi|16604501|gb|AAL24256.1|
           At2g01970/F14H20.4 [Arabidopsis thaliana]
          Length = 592

 Score = 95.9 bits (237), Expect = 2e-19
 Identities = 47/111 (42%), Positives = 68/111 (60%), Gaps = 8/111 (7%)
 Frame = +3

Query: 174 VRLPAAIEQAVGRQLLS--------EKDHSYQPDDKVPLWASKVGPFTNPSETYEYYSLP 329
           +RLP  +   +G  + S          DH Y+  D VPL+A+KVGPF NPSETY Y+ LP
Sbjct: 1   MRLPTTLLLFIGALIFSGAGTVRSDASDHRYKDGDSVPLYANKVGPFHNPSETYRYFDLP 60

Query: 330 YCQPKDGVKHKLLGMGEVVDANRMASTPYQLQFRKNRQREAVCEQLLDQEK 482
           +C P +GVK K   +GEV++ +R+ S PY+L FR  +  E  C++ L +E+
Sbjct: 61  FCIP-EGVKDKKEALGEVLNGDRLVSAPYKLNFRDEKDSEVYCKKKLSREE 110

>pir||D86243 hypothetical protein [imported] - Arabidopsis thaliana
           gi|1931647|gb|AAB65482.1| endomembrane protein EMP70
           precusor isolog; 68664-64364 [Arabidopsis thaliana]
          Length = 589

 Score = 95.5 bits (236), Expect = 3e-19
 Identities = 43/106 (40%), Positives = 63/106 (58%)
 Frame = +3

Query: 165 SAAVRLPAAIEQAVGRQLLSEKDHSYQPDDKVPLWASKVGPFTNPSETYEYYSLPYCQPK 344
           SAAV +   +   +     S+ DH YQ +++V LW +KVGP+ NP ETY YYSLP+C+P 
Sbjct: 6   SAAVLVFLLLVSLLTPTFASDSDHKYQAEEQVTLWVNKVGPYNNPQETYNYYSLPFCRPS 65

Query: 345 DGVKHKLLGMGEVVDANRMASTPYQLQFRKNRQREAVCEQLLDQEK 482
               HK  G+GEV+  N +  +   ++F KN +R  +C   LD+ K
Sbjct: 66  GNNVHKWGGLGEVLGGNELIDSEIAIKFMKNVERSVICPLELDEAK 111



EST assemble image


clone accession position
1 MXL010f04_r BP093592 1 226
2 LCL066f03_r AV629814 3 483




Chlamydomonas reinhardtii
Kazusa DNA Research Institute