Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC003268A_C01 KCC003268A_c01
(441 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAO41142.1| unknown protein [Oryza sativa (japonica cultivar-... 36 0.11
ref|NP_862169.1| hypothetical protein [Streptomyces violaceorube... 35 0.23
ref|NP_149418.1| double homeobox, 4; double homeobox protein 4 [... 33 0.89
pir||T03225 probable regulatory protein - Streptomyces hygroscop... 33 1.2
ref|ZP_00049895.1| COG0642: Signal transduction histidine kinase... 33 1.2
>gb|AAO41142.1| unknown protein [Oryza sativa (japonica cultivar-group)]
Length = 782
Score = 36.2 bits (82), Expect = 0.11
Identities = 28/75 (37%), Positives = 34/75 (45%), Gaps = 3/75 (4%)
Frame = +1
Query: 160 SRWVWSSSSCLSPSLCRAFWARASRPCAWTSRTKGPLALASRWGH---RAQTGEG*LAAA 330
SR + SSSS S + AF R PCA S P A+ W H RA T AAA
Sbjct: 3 SRVLVSSSSSSSSAAAAAFLPRIPNPCANPSHRGAPPCGAALWRHHSGRAVT----TAAA 58
Query: 331 ASGSSPRWYSGYRRG 375
A+ + W + Y G
Sbjct: 59 AAATGDHWGAEYHGG 73
>ref|NP_862169.1| hypothetical protein [Streptomyces violaceoruber]
gi|28797313|gb|AAO50160.1| hypothetical protein
[Streptomyces violaceoruber]
Length = 236
Score = 35.0 bits (79), Expect = 0.23
Identities = 26/73 (35%), Positives = 40/73 (54%), Gaps = 2/73 (2%)
Frame = -2
Query: 404 ALRVIVECRRPRLYPLYQRGELPDAAAASQPSPV*A--LWPQREANANGPLVLLVHAHGR 231
A++ +E + L L QR PD A+ QPSP+ A + P+R+A A+ L R
Sbjct: 158 AIQEAIESQTRALRELSQRA-FPDLASGDQPSPIEAARVQPRRDAAASRATAL------R 210
Query: 230 LARAQKARHNDGE 192
ARA++A+ DG+
Sbjct: 211 RARAERAQKADGQ 223
>ref|NP_149418.1| double homeobox, 4; double homeobox protein 4 [Homo sapiens]
gi|1435038|dbj|BAA07227.1| facioscapulohumeral muscular
dystrophy [Homo sapiens]
Length = 853
Score = 33.1 bits (74), Expect = 0.89
Identities = 25/79 (31%), Positives = 32/79 (39%), Gaps = 4/79 (5%)
Frame = +2
Query: 131 HPFPD-VGAVYRAGYGLPLPASHHHCVA---PSGLARAGRARGQAGLRGH*H*PPAGATE 298
HP P V + +G LPA H C P G + AR L+ P G ++
Sbjct: 634 HPAPSWVAFAHTGAWGTGLPAPHVPCAPGALPQGAFVSQAARAAPALQPSQAAPAEGVSQ 693
Query: 299 LKPARVDWLQQHPAVPLAG 355
PAR D+ PA P G
Sbjct: 694 PAPARGDFAYAAPAPPEPG 712
>pir||T03225 probable regulatory protein - Streptomyces hygroscopicus
gi|2624952|gb|AAC38065.1| putative regulatory protein
[Streptomyces hygroscopicus]
Length = 948
Score = 32.7 bits (73), Expect = 1.2
Identities = 31/96 (32%), Positives = 39/96 (40%), Gaps = 17/96 (17%)
Frame = +1
Query: 169 VWSSSS---CLSPSLCR------AFWARASRPCAWTSRTKGPLA--------LASRWGHR 297
VW+ S CL P + A W A R C WT+R P A +A R G
Sbjct: 584 VWTGESALLCLMPEVYADRTERAARWCEAWRQCPWTARVPMPRAELSAVSAEIAVRRGDL 643
Query: 298 AQTGEG*LAAAASGSSPRWYSGYRRGLRHSTMTRSA 405
A E AA S+P W G GL S++ +A
Sbjct: 644 AAAVERARAALEEVSAPAW--GTAAGLPLSSLILAA 677
>ref|ZP_00049895.1| COG0642: Signal transduction histidine kinase [Magnetospirillum
magnetotacticum]
Length = 386
Score = 32.7 bits (73), Expect = 1.2
Identities = 25/66 (37%), Positives = 29/66 (43%), Gaps = 4/66 (6%)
Frame = -1
Query: 255 PACPRARPARASP-EGATQ*W*EAGRG---RPYPARYTAPTSGKGWLGYAYPLLAREKAE 88
P CP RPAR SP G + AGRG RP P + +GW P L+
Sbjct: 294 PICPTRRPARRSPCRGGRRARPSAGRGPGPRPRPRXRRMSRASRGW----RPSLSSTSPV 349
Query: 87 RAERLR 70
RA R R
Sbjct: 350 RALRXR 355
