KCC003263A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC003263A_C01 KCC003263A_c01
ccaaaagcgacttcttttttcgcggctttgcgaataacggtgcggcacggtcgtgtgtgg
tgcgtgatcatgaTGCGCATATGACGTCAGAATACATTTTGAGTGTGCAGCAGAAGCCGT
CATCACAGATATTTAATGCATGCAAAGTGTCGCATGGTAATGTCGACTGACGGGTCACGG
AAGCTTATCCAGAGCGTGCGGCGCCCTCATACTGTAGCGCCAGCCCCTCAAGCTTCCTAT
GAGAATGCTACAATGTGGTTGTTTCAGGCTACAGCTTTCAAAGCAGGCGGGTTGGCTGAC
GTCTAGGTGCCCGTGAGGTGCCCGTAAGTTCCGGAGGGGGCTGGAAGTAGGCACATGAGT
AGGCGGTCGCAGGATGGAGCGCTGGGTTGACCTGTGGGGATCACGCCGCCGCTGCGGCAA
GCATTGAGCTTTGTTTATGAAGCAAGTCAAAAGTGTTTGTTGGTTTCACACTTGCGTGGT
ATTTCTTTGGCGCTGTAGCCTGATGGATGGGTATGGCACCAGGCGTGCTGGCGCATGCTG
CTGATGAGGCATAAGGGGGACCTTGTCCGTAAGCCTTGCGCAATTGTGAAGATAACGTTG
TGCAACATGAAGAGCTCCATTGCGATCGG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC003263A_C01 KCC003263A_c01
         (629 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|XP_327587.1| hypothetical protein [Neurospora crassa] gi|289...    37  0.31
dbj|BAC65471.1| mKIAA0023 protein [Mus musculus]                       36  0.52
gb|AAH39282.1| Hypothetical protein MGC37347 [Mus musculus]            36  0.52
ref|XP_293211.2| similar to hydroxyproline-rich glycoprotein pre...    34  2.0
dbj|BAA85878.1| MEKK1 N-terminal [Mus musculus]                        33  2.6

>ref|XP_327587.1| hypothetical protein [Neurospora crassa] gi|28923752|gb|EAA32919.1|
           hypothetical protein [Neurospora crassa]
          Length = 830

 Score = 36.6 bits (83), Expect = 0.31
 Identities = 23/94 (24%), Positives = 38/94 (39%), Gaps = 4/94 (4%)
 Frame = -2

Query: 559 PPYASSAACASTPGAIPIHQATAPKKYHASVKPTNTFDLLHKQSSMLAAAAA*SPQVNPA 380
           PP A + A  S    +      A     ++V   +  D  H+++ ++++ A   P  +P 
Sbjct: 100 PPNAPTHAADSEQDVVVASLTPATASDPSTVDREDANDTQHEETDLMSSVATLKPTTSPT 159

Query: 379 LHPATAY----SCAYFQPPPELTGTSRAPRRQPT 290
              AT Y    S  Y  P P     S+ P R P+
Sbjct: 160 TTTATQYLTIESRTYIDPTPSTPAVSQPPSRSPS 193

>dbj|BAC65471.1| mKIAA0023 protein [Mus musculus]
          Length = 2112

 Score = 35.8 bits (81), Expect = 0.52
 Identities = 28/112 (25%), Positives = 46/112 (41%), Gaps = 4/112 (3%)
 Frame = -2

Query: 616 SSSCCTTLSSQLRKAYGQGPPYASSAACASTPGAIPIHQATAPKKY----HASVKPTNTF 449
           +SS    L+ +        P ++S+    STP  +P   +  P       H +  P ++ 
Sbjct: 600 ASSVKVNLNEKFTAVASSAPVHSST----STPSVLPFSSSPKPTASGPLSHPTPLPASSS 655

Query: 448 DLLHKQSSMLAAAAA*SPQVNPALHPATAYSCAYFQPPPELTGTSRAPRRQP 293
            +  K S   + AA  S Q  P+  P+T        PP   +G+S+A   QP
Sbjct: 656 SMPLKSSVSPSPAAGRSTQTAPSSAPSTGQKSPRVNPPVPKSGSSQAKALQP 707

>gb|AAH39282.1| Hypothetical protein MGC37347 [Mus musculus]
          Length = 1521

 Score = 35.8 bits (81), Expect = 0.52
 Identities = 28/112 (25%), Positives = 46/112 (41%), Gaps = 4/112 (3%)
 Frame = -2

Query: 616 SSSCCTTLSSQLRKAYGQGPPYASSAACASTPGAIPIHQATAPKKY----HASVKPTNTF 449
           +SS    L+ +        P ++S+    STP  +P   +  P       H +  P ++ 
Sbjct: 9   ASSVKVNLNEKFTAVASSAPVHSST----STPSVLPFSSSPKPTASGPLSHPTPLPASSS 64

Query: 448 DLLHKQSSMLAAAAA*SPQVNPALHPATAYSCAYFQPPPELTGTSRAPRRQP 293
            +  K S   + AA  S Q  P+  P+T        PP   +G+S+A   QP
Sbjct: 65  SMPLKSSVSPSPAAGRSTQTAPSSAPSTGQKSPRVNPPVPKSGSSQAKALQP 116

>ref|XP_293211.2| similar to hydroxyproline-rich glycoprotein precursor [Homo sapiens]
          Length = 1316

 Score = 33.9 bits (76), Expect = 2.0
 Identities = 18/57 (31%), Positives = 27/57 (46%)
 Frame = -2

Query: 508  IHQATAPKKYHASVKPTNTFDLLHKQSSMLAAAAA*SPQVNPALHPATAYSCAYFQP 338
            +H+A+ P   HA V P      LH+    +   A  SP ++ A HP   Y+C +  P
Sbjct: 951  LHRASRPVYIHAGVSP-----YLHRACRPVYIHACVSPYLHWACHPVYIYACVFLLP 1002

>dbj|BAA85878.1| MEKK1 N-terminal [Mus musculus]
          Length = 654

 Score = 33.5 bits (75), Expect = 2.6
 Identities = 28/89 (31%), Positives = 39/89 (43%), Gaps = 3/89 (3%)
 Frame = -2

Query: 568 GQGPPYASSAACASTPGAIPIHQATAPKKYHASVKPTNTFDLLHKQSSMLAAAAA*SPQV 389
           G GP  A +A     PG+    +A   ++    V+     D L +Q   LAAA+   P  
Sbjct: 33  GSGPA-AGAAGLLREPGSAGRERADWRRRQLRKVRSVE-LDQLPEQPLFLAAASPPCPST 90

Query: 388 NPALHPATAYSCAYFQP---PPELTGTSR 311
           +P+  PA A   + FQP   PP     SR
Sbjct: 91  SPSPEPADAAGASRFQPAAGPPPPGAASR 119



EST assemble image


clone accession position
1 LCL061g07_r AV629600 1 407
2 MX064d08_r BP088591 74 421
3 MX066g12_r BP088701 162 629




Chlamydomonas reinhardtii
Kazusa DNA Research Institute