KCC003262A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC003262A_C01 KCC003262A_c01
gttgcctacaacaaaTGGAGCCTGTCATAACCAACTTAAAGCCGCGGCAAGCGACTCAGG
CGTCGCCGAGAAACTAGTTGACGCGAGCGGCTTCTCGTGGTTTCGCGCACGCGCTGATAC
TCTAAACATCAAAACTGGAAAGATGGCACGTCGCCGCCGAGCAGGCGCGCGCTCTGCTCT
TCAAGCCCCTCTCGGCGCGGGGGGCGGACGACAGCGCCACTCGGGACGACTCAAACAAGT
ATAGCAAATACAGCAAACCCAAGAATGCATTCAGAATCAAGCTATGGCACGGGCTTACAG
CCGGGCCTAGTCTTTTCAGCAAGTGTTTCGGGCTTTGCATGCCGACAGCCTACATGAGCG
TGGCGAGCCGCGAGCAGGAGCTGGTGGAGGGTTCGTCAAAGGGAAAGAGGCGGCCCAAAA
GCAACTGGCGCGAGATCTCCCTGGTGCAGCAGTACACACTCGTGAAGCAGATTGGCAAGG
GCGGCTTCAGTGAAATTTGGCTGGGCGAGCAC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC003262A_C01 KCC003262A_c01
         (512 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAM88615.1| putative polyamine oxidase [Oryza sativa (japonic...    37  0.15
gb|AAM94513.1| putative polyamine oxidase, 3'-partial [Oryza sat...    37  0.15
dbj|BAB92414.1| P0691E06.10 [Oryza sativa (japonica cultivar-gro...    37  0.19
gb|AAC62265.1| NADH dehydrogenase subunit 2 [Anolis paternus]          34  0.95
gb|AAP06899.1| putative S_TKc, Serine/Threonine protein kinases,...    34  0.95

>gb|AAM88615.1| putative polyamine oxidase [Oryza sativa (japonica cultivar-group)]
           gi|31433239|gb|AAP54781.1| putative polyamine oxidase
           [Oryza sativa (japonica cultivar-group)]
          Length = 1862

 Score = 37.0 bits (84), Expect = 0.15
 Identities = 17/35 (48%), Positives = 21/35 (59%)
 Frame = -1

Query: 392 TLHQLLLAARHAHVGCRHAKPETLAEKTRPGCKPV 288
           T  + LL  R+   GC H KP TLA K+ PG KP+
Sbjct: 336 TYSETLLKERNDDAGCSHGKPPTLAIKSIPGKKPI 370

>gb|AAM94513.1| putative polyamine oxidase, 3'-partial [Oryza sativa (japonica
           cultivar-group)]
          Length = 1348

 Score = 37.0 bits (84), Expect = 0.15
 Identities = 17/35 (48%), Positives = 21/35 (59%)
 Frame = -1

Query: 392 TLHQLLLAARHAHVGCRHAKPETLAEKTRPGCKPV 288
           T  + LL  R+   GC H KP TLA K+ PG KP+
Sbjct: 336 TYSETLLKERNDDAGCSHGKPPTLAIKSIPGKKPI 370

>dbj|BAB92414.1| P0691E06.10 [Oryza sativa (japonica cultivar-group)]
          Length = 410

 Score = 36.6 bits (83), Expect = 0.19
 Identities = 18/46 (39%), Positives = 27/46 (58%)
 Frame = -3

Query: 471 SASRVCTAAPGRSRASCFWAASFPLTNPPPAPARGSPRSCRLSACK 334
           +A+  C A+P +SRA+ F  A+     PPP PA  S ++ R+S  K
Sbjct: 54  AAATTCAASPEKSRAADFARAAAASLLPPPTPASVSAKATRVSGAK 99

>gb|AAC62265.1| NADH dehydrogenase subunit 2 [Anolis paternus]
          Length = 345

 Score = 34.3 bits (77), Expect = 0.95
 Identities = 21/56 (37%), Positives = 30/56 (53%)
 Frame = +3

Query: 21  PVITNLKPRQATQASPRN*LTRAASRGFAHALIL*TSKLERWHVAAEQARALLFKP 188
           P+I+     +AT+AS +  LT+AA    A ALIL +S    WH  +     +LF P
Sbjct: 42  PIISTTHHPRATEASTKYFLTQAA----ASALILFSSMTNAWHTGSWDITQMLFSP 93

>gb|AAP06899.1| putative S_TKc, Serine/Threonine protein kinases, catalytic domain
           [Oryza sativa (japonica cultivar-group)]
          Length = 628

 Score = 34.3 bits (77), Expect = 0.95
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = +3

Query: 444 VQQYTLVKQIGKGGFSEIWLGEH 512
           V  Y LV+QIG G ++ +WLG+H
Sbjct: 21  VGDYVLVRQIGSGAYARVWLGKH 43



EST assemble image


clone accession position
1 LCL087e02_r AV631002 1 512
2 MXL063e11_r BP096714 16 473
3 LCL061f08_r AV629595 20 511




Chlamydomonas reinhardtii
Kazusa DNA Research Institute