Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC003258A_C01 KCC003258A_c01
(610 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_173520.1| U5 small nuclear ribonucleoprotein helicase, pu... 300 1e-80
ref|NP_181756.1| U5 small nuclear ribonucleoprotein helicase, pu... 295 4e-79
gb|AAP13001.1| putative Sec63 domain containing protein [Oryza s... 280 9e-75
ref|NP_648818.3| CG5931-PA [Drosophila melanogaster] gi|33112469... 274 8e-73
dbj|BAA34508.2| KIAA0788 protein [Homo sapiens] 273 1e-72
>ref|NP_173520.1| U5 small nuclear ribonucleoprotein helicase, putative [Arabidopsis
thaliana] gi|25518570|pir||E86342 hypothetical protein
F9H16.5 [imported] - Arabidopsis thaliana
gi|4836892|gb|AAD30595.1|AC007369_5 Putative RNA helicase
[Arabidopsis thaliana]
Length = 2171
Score = 300 bits (767), Expect = 1e-80
Identities = 142/203 (69%), Positives = 180/203 (87%)
Frame = +1
Query: 1 HGLVRYDRKTGNFQTTDLGRIASHYYVSYTTIAHFNEHLKPTMTDIELLRLFSLAEEFRY 180
+ LV+YDRK+G FQ TDLGRIAS+YY+++ TIA +NEHLKPTM DI+L RLFSL++EF+Y
Sbjct: 991 NNLVKYDRKSGYFQVTDLGRIASYYYITHGTIATYNEHLKPTMGDIDLYRLFSLSDEFKY 1050
Query: 181 MVVRDEEKLELAKLVERVPIPVKESLDEPTAKVNVLLQAYISNLKLEGLALASDMVYVTQ 360
+ VR +EK+ELAKL++RVPIP+KE+L+EP+AK+NVLLQAYIS LKLEGL+L SDMVY+TQ
Sbjct: 1051 VTVRQDEKMELAKLLDRVPIPIKETLEEPSAKINVLLQAYISQLKLEGLSLTSDMVYITQ 1110
Query: 361 SAGRLMRCLFEICLRRGWAGLTDRALALSKMVTYRMWGSQTPLRQFKGVPNDVLVKLEKR 540
SAGRL+R L+EI L+RGWA L ++AL LSKMV RMW QTPLRQF G+ ND+L++LEK+
Sbjct: 1111 SAGRLVRALYEIVLKRGWAQLAEKALNLSKMVGKRMWSVQTPLRQFHGLSNDILMQLEKK 1170
Query: 541 DLPWQRFYDLSSQELGELIRAPK 609
DL W+R+YDLS+QELGELIR+PK
Sbjct: 1171 DLVWERYYDLSAQELGELIRSPK 1193
Score = 78.2 bits (191), Expect = 9e-14
Identities = 51/164 (31%), Positives = 81/164 (49%), Gaps = 1/164 (0%)
Frame = +1
Query: 49 DLGRIASHYYVSYTTIAHFNEHLKPTMTDIELLRLFSLAEEFRYMVVRDEEKLELAKLVE 228
+LG IAS+YY+SYTTI F+ L LL + + A E+ + +R E+ + +L+
Sbjct: 1841 NLGMIASYYYISYTTIERFSSLLSSKTKMKGLLEILTSASEYDMIPIRPGEEDTVRRLIN 1900
Query: 229 RVPIPVKE-SLDEPTAKVNVLLQAYISNLKLEGLALASDMVYVTQSAGRLMRCLFEICLR 405
+ +P K N LLQA+ S + G LA D V SA RL++ + ++
Sbjct: 1901 HQRFSFENPKCTDPHVKANALLQAHFSRQNIGG-NLAMDQRDVLLSATRLLQAMVDVISS 1959
Query: 406 RGWAGLTDRALALSKMVTYRMWGSQTPLRQFKGVPNDVLVKLEK 537
GW L A+ +S+MVT MW + L Q D+ + ++
Sbjct: 1960 NGWLNLALLAMEVSQMVTQGMWERDSMLLQLPHFTKDLAKRCQE 2003
>ref|NP_181756.1| U5 small nuclear ribonucleoprotein helicase, putative [Arabidopsis
thaliana] gi|7484814|pir||T00936 probable ATP-dependent
RNA helicase At2g42270 [imported] - Arabidopsis thaliana
gi|2673917|gb|AAB88651.1| putative ATP-dependent RNA
helicase [Arabidopsis thaliana]
Length = 2172
Score = 295 bits (754), Expect = 4e-79
Identities = 141/203 (69%), Positives = 176/203 (86%)
Frame = +1
Query: 1 HGLVRYDRKTGNFQTTDLGRIASHYYVSYTTIAHFNEHLKPTMTDIELLRLFSLAEEFRY 180
+ L++YDRK+G+FQ TDLGRIAS+YY+S+ TIA +NE+LKPTM DIEL RLFSL+EEF+Y
Sbjct: 992 NNLIKYDRKSGHFQVTDLGRIASYYYISHGTIAAYNENLKPTMNDIELCRLFSLSEEFKY 1051
Query: 181 MVVRDEEKLELAKLVERVPIPVKESLDEPTAKVNVLLQAYISNLKLEGLALASDMVYVTQ 360
+ VR +EK+ELAKL++RVPIPVKE+L++P+AK+NVLLQ YIS LKLEGL+L SDMVY+TQ
Sbjct: 1052 VTVRQDEKMELAKLLDRVPIPVKETLEDPSAKINVLLQVYISKLKLEGLSLTSDMVYITQ 1111
Query: 361 SAGRLMRCLFEICLRRGWAGLTDRALALSKMVTYRMWGSQTPLRQFKGVPNDVLVKLEKR 540
SAGRL+R +FEI L+RGWA L+ +AL LSKMV RMW QTPL QF G+P ++L+KLEK
Sbjct: 1112 SAGRLLRAIFEIVLKRGWAQLSQKALNLSKMVGKRMWSVQTPLWQFPGIPKEILMKLEKN 1171
Query: 541 DLPWQRFYDLSSQELGELIRAPK 609
DL W+R+YDLSSQELGELI PK
Sbjct: 1172 DLVWERYYDLSSQELGELICNPK 1194
Score = 72.0 bits (175), Expect = 6e-12
Identities = 48/158 (30%), Positives = 77/158 (48%), Gaps = 1/158 (0%)
Frame = +1
Query: 49 DLGRIASHYYVSYTTIAHFNEHLKPTMTDIELLRLFSLAEEFRYMVVRDEEKLELAKLVE 228
+LG IAS+YY++YTTI F+ L LL + + A E+ + +R E+ + +L+
Sbjct: 1842 NLGMIASYYYINYTTIERFSSLLASKTKMKGLLEILTSASEYDLIPIRPGEEDAVRRLIN 1901
Query: 229 RVPIPVKE-SLDEPTAKVNVLLQAYISNLKLEGLALASDMVYVTQSAGRLMRCLFEICLR 405
+ +P K + LLQA+ S K+ G L D V SA RL++ + ++
Sbjct: 1902 HQRFSFQNPRCTDPRVKTSALLQAHFSRQKISG-NLVMDQCEVLLSATRLLQAMVDVISS 1960
Query: 406 RGWAGLTDRALALSKMVTYRMWGSQTPLRQFKGVPNDV 519
G L A+ +S+MVT MW + L Q D+
Sbjct: 1961 NGCLNLALLAMEVSQMVTQGMWDRDSMLLQLPHFTKDL 1998
>gb|AAP13001.1| putative Sec63 domain containing protein [Oryza sativa (japonica
cultivar-group)]
Length = 2144
Score = 280 bits (717), Expect = 9e-75
Identities = 135/203 (66%), Positives = 170/203 (83%)
Frame = +1
Query: 1 HGLVRYDRKTGNFQTTDLGRIASHYYVSYTTIAHFNEHLKPTMTDIELLRLFSLAEEFRY 180
+ L++YDRKTG FQ TDLGRIAS+YYVS+ TI+ +NE LKPTM DIEL RLFSL+EEF+Y
Sbjct: 971 NNLIKYDRKTGYFQVTDLGRIASYYYVSHRTISTYNECLKPTMGDIELCRLFSLSEEFKY 1030
Query: 181 MVVRDEEKLELAKLVERVPIPVKESLDEPTAKVNVLLQAYISNLKLEGLALASDMVYVTQ 360
+ VR +EK+ELAKL VPIPVKESLDEP+AK+NVLLQAYIS L+LEGL+L+SDMVY+ Q
Sbjct: 1031 VSVRQDEKMELAKLFNCVPIPVKESLDEPSAKINVLLQAYISRLELEGLSLSSDMVYIRQ 1090
Query: 361 SAGRLMRCLFEICLRRGWAGLTDRALALSKMVTYRMWGSQTPLRQFKGVPNDVLVKLEKR 540
+AGRL+R LFEI L+RGWA L ++AL L KM+ +W Q PL QF +P ++L+KLEK+
Sbjct: 1091 NAGRLLRALFEIVLKRGWAQLAEKALNLCKMIDKHIWNVQIPLHQFPSIPKEILMKLEKK 1150
Query: 541 DLPWQRFYDLSSQELGELIRAPK 609
+L W+R++DLSSQE+GELIR PK
Sbjct: 1151 ELAWERYFDLSSQEIGELIRNPK 1173
Score = 89.0 bits (219), Expect = 5e-17
Identities = 61/195 (31%), Positives = 100/195 (51%), Gaps = 6/195 (3%)
Frame = +1
Query: 40 QTTDLGRIASHYYVSYTTIAHFNEHLKPTMTDIELLRLFSLAEEFRYMVVRDEEKLELAK 219
+T +LG IAS+YYV+YTTI F+ L LL + + A E+ + R E+ + +
Sbjct: 1817 KTLNLGLIASYYYVTYTTIERFSSMLTQKTKLKGLLEILASASEYADLPSRPGEQKSIER 1876
Query: 220 LV--ERVPIPVKESLDEPTAKVNVLLQAYISNLKLEGLALASDMVYVTQSAGRLMRCLFE 393
LV +R + K D+P K N LLQ + S +EG LA+D + A RL++ L +
Sbjct: 1877 LVHHQRFSVEKKVRYDDPHVKANALLQCHFSRRTVEG-DLAADQREILLPAHRLLQALID 1935
Query: 394 ICLRRGWAGLTDRALALSKMVTYRMWGSQTPLRQFKGVPNDVLVKLEKRD-LPWQRFYDL 570
+ GW L A+ LS+MVT MW + L Q ++ + ++ + + +DL
Sbjct: 1936 VISSNGWLTLALNAMELSQMVTQGMWDRDSVLLQLPHFTEELARRCQENEGKAIETIFDL 1995
Query: 571 ---SSQELGELIRAP 606
S+ E+ +L++ P
Sbjct: 1996 AEMSTHEMQDLLQLP 2010
>ref|NP_648818.3| CG5931-PA [Drosophila melanogaster] gi|33112469|sp|Q9VUV9|U520_DROME
Putative U5 small nuclear ribonucleoprotein 200 kDa
helicase gi|28380515|gb|AAF49564.4| CG5931-PA [Drosophila
melanogaster]
Length = 2142
Score = 274 bits (700), Expect = 8e-73
Identities = 132/202 (65%), Positives = 164/202 (80%)
Frame = +1
Query: 4 GLVRYDRKTGNFQTTDLGRIASHYYVSYTTIAHFNEHLKPTMTDIELLRLFSLAEEFRYM 183
GL++YDRKTG+FQ TDLGRIASHYY+++ T+ +N+ LK T+++IEL R+FSL+ EFR++
Sbjct: 968 GLIKYDRKTGHFQVTDLGRIASHYYLTHETMLTYNQLLKQTLSEIELFRVFSLSSEFRHI 1027
Query: 184 VVRDEEKLELAKLVERVPIPVKESLDEPTAKVNVLLQAYISNLKLEGLALASDMVYVTQS 363
VR+EEKLEL KL+ERVPIP+KES++E +AKVNVLLQAYIS LKLEG AL SDMV++TQS
Sbjct: 1028 SVREEEKLELQKLMERVPIPIKESIEEHSAKVNVLLQAYISQLKLEGFALMSDMVFITQS 1087
Query: 364 AGRLMRCLFEICLRRGWAGLTDRALALSKMVTYRMWGSQTPLRQFKGVPNDVLVKLEKRD 543
A RLMR +FEI L RGWA L D+ L L KM+ RMW S TPLRQFK +P+++ KLEK+
Sbjct: 1088 AARLMRAIFEIVLTRGWAQLADKTLTLCKMIDRRMWQSMTPLRQFKKMPDEIAKKLEKKH 1147
Query: 544 LPWQRFYDLSSQELGELIRAPK 609
PW R YDL ELGELIR PK
Sbjct: 1148 FPWGRLYDLEPHELGELIRVPK 1169
Score = 82.0 bits (201), Expect = 6e-15
Identities = 52/172 (30%), Positives = 88/172 (50%), Gaps = 6/172 (3%)
Frame = +1
Query: 49 DLGRIASHYYVSYTTIAHFNEHLKPTMTDIELLRLFSLAEEFRYMVVRDEEKLELAKLVE 228
+LG IA++YY++YTTI F+ L LL + S A E+ +VVR E+ L L +
Sbjct: 1813 NLGMIAAYYYINYTTIELFSLSLNSKTKVRGLLEIISSAAEYEDVVVRHHEEQVLRTLSQ 1872
Query: 229 RVPIPV------KESLDEPTAKVNVLLQAYISNLKLEGLALASDMVYVTQSAGRLMRCLF 390
R+P + ++P K N+LLQA++S L+L G L D + A RL++
Sbjct: 1873 RLPNKLTGPNETAPKFNDPHIKTNLLLQAHLSRLQL-GPELQGDTEQILSKAIRLIQACV 1931
Query: 391 EICLRRGWAGLTDRALALSKMVTYRMWGSQTPLRQFKGVPNDVLVKLEKRDL 546
++ GW A+ L++MVT MW + L+Q +++ + ++ +
Sbjct: 1932 DVLSSNGWLSPAVAAMELAQMVTQAMWSKDSYLKQLPHFSPEIVKRCTEKKI 1983
>dbj|BAA34508.2| KIAA0788 protein [Homo sapiens]
Length = 2026
Score = 273 bits (699), Expect = 1e-72
Identities = 130/203 (64%), Positives = 168/203 (82%)
Frame = +1
Query: 1 HGLVRYDRKTGNFQTTDLGRIASHYYVSYTTIAHFNEHLKPTMTDIELLRLFSLAEEFRY 180
+ LV+YD+KTGNFQ T+LGRIASHYY++ T+ +N+ LKPT+++IEL R+FSL+ EF+
Sbjct: 857 NNLVKYDKKTGNFQVTELGRIASHYYITNDTVQTYNQLLKPTLSEIELFRVFSLSSEFKN 916
Query: 181 MVVRDEEKLELAKLVERVPIPVKESLDEPTAKVNVLLQAYISNLKLEGLALASDMVYVTQ 360
+ VR+EEKLEL KL+ERVPIPVKES++EP+AK+NVLLQA+IS LKLEG AL +DMVYVTQ
Sbjct: 917 ITVREEEKLELQKLLERVPIPVKESIEEPSAKINVLLQAFISQLKLEGFALMADMVYVTQ 976
Query: 361 SAGRLMRCLFEICLRRGWAGLTDRALALSKMVTYRMWGSQTPLRQFKGVPNDVLVKLEKR 540
SAGRLMR +FEI L RGWA LTD+ L L KM+ RMW S PLRQF+ +P +V+ K+EK+
Sbjct: 977 SAGRLMRAIFEIVLNRGWAQLTDKTLNLCKMIDKRMWQSMCPLRQFRKLPEEVVKKIEKK 1036
Query: 541 DLPWQRFYDLSSQELGELIRAPK 609
+ P++R YDL+ E+GELIR PK
Sbjct: 1037 NFPFERLYDLNHNEIGELIRMPK 1059
Score = 80.5 bits (197), Expect = 2e-14
Identities = 48/150 (32%), Positives = 80/150 (53%), Gaps = 1/150 (0%)
Frame = +1
Query: 49 DLGRIASHYYVSYTTIAHFNEHLKPTMTDIELLRLFSLAEEFRYMVVRDEEKLELAKLVE 228
+LG IA++YY++YTTI F+ L L+ + S A E+ + +R E L +L +
Sbjct: 1704 NLGMIAAYYYINYTTIELFSMSLNAKTKVRGLIEIISNAAEYENIPIRHHEDNLLRQLAQ 1763
Query: 229 RVPIPVKE-SLDEPTAKVNVLLQAYISNLKLEGLALASDMVYVTQSAGRLMRCLFEICLR 405
+VP + ++P K N+LLQA++S ++L L SD + A RL++ ++
Sbjct: 1764 KVPHKLNNPKFNDPHVKTNLLLQAHLSRMQLSA-ELQSDTEEILSKAIRLIQACVDVLSS 1822
Query: 406 RGWAGLTDRALALSKMVTYRMWGSQTPLRQ 495
GW A+ L++MVT MW + L+Q
Sbjct: 1823 NGWLSPALAAMELAQMVTQAMWSKDSYLKQ 1852
