KCC003247A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC003247A_C01 KCC003247A_c01
ggTTGCATCCTAACCCGTCCTCTACTGGCCGTCTTGCCTGCTGCCCAACCAACCGAACCA
TCAGTTCCTCTTACCGGCCTGAGACAGCAGCTTGCTCGCGGTTAGAGAGCGCGAGTTACA
CGACCAGTAACTCAGTAGCAGATTGCATTTCTGCCGGGCGGTGTGGAGCGCAAGCGAAGG
CGAGCGGTGGAGAGCGAGTGCACAGTTCCTTGAACCTTGCTCCCGCGGACCCTGAACGGC
CAGCTGCTTCAGCAGCAGCCTCCTAGGTCAAGACACTTACAGGACAACAGGAGCCACATC
AGCCCCTGAAAACCAGCAGCCGGAAAATGCAGTCCAAGTTGAACCACGTGCCGGCGCGGA
GCGCCGTCTCCACCCCAACCAGCGCCGCCACGCGGCGCGTAGCGCCCGCGGCTGCTGTTC
CCGC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC003247A_C01 KCC003247A_c01
         (424 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_001443.1| forkhead box F2; forkhead (Drosophila)-like 6 [...    41  0.003
sp|P14328|SP96_DICDI Spore coat protein SP96 gi|84145|pir||S0763...    40  0.006
gb|AAO50776.1| similar to Dictyostelium discoideum (Slime mold)....    40  0.006
sp|Q04503|DP87_DICDI Prespore protein DP87 precursor gi|217302|d...    40  0.008
gb|AAK31375.1|AC084329_1 ppg3 [Leishmania major]                       38  0.037

>ref|NP_001443.1| forkhead box F2; forkhead (Drosophila)-like 6 [Homo sapiens]
           gi|8247925|sp|Q12947|FXF2_HUMAN Forkhead box protein F2
           (Forkhead-related protein FKHL6) (Forkhead-related
           transcription factor 2) (FREAC-2) (Forkhead-related
           activator-2) gi|7438475|pir||T09474 forkhead protein
           FREAC-2 - human gi|3425850|gb|AAC32226.1| forkhead
           protein FREAC-2 [Homo sapiens] gi|4406140|gb|AAD19875.1|
           forkhead transcription factor [Homo sapiens]
          Length = 444

 Score = 41.2 bits (95), Expect = 0.003
 Identities = 34/105 (32%), Positives = 48/105 (45%)
 Frame = +3

Query: 3   LHPNPSSTGRLACCPTNRTISSSYRPETAACSRLESASYTTSNSVADCISAGRCGAQAKA 182
           + P P++    A  P   T SSS    +A+C+   S+S + S   A C SAG  GA A +
Sbjct: 28  MSPPPAAAAAAAAAP--ETTSSSSSSSSASCASSSSSSNSASAPSAACKSAGGGGAGAGS 85

Query: 183 SGGERVHSSLNLAPADPERPAASAAAS*VKTLTGQQEPHQPLKTS 317
            G ++  S L      PE+P  S  A  V  +  Q  P + L  S
Sbjct: 86  GGAKKASSGLR----RPEKPPYSYIALIVMAI--QSSPSKRLTLS 124

>sp|P14328|SP96_DICDI Spore coat protein SP96 gi|84145|pir||S07638 spore coat protein
           SP96 precursor - slime mold  (Dictyostelium discoideum)
           gi|295736|emb|CAA34508.1| spore coat protein sp96
           [Dictyostelium discoideum]
          Length = 600

 Score = 40.4 bits (93), Expect = 0.006
 Identities = 29/101 (28%), Positives = 52/101 (50%), Gaps = 2/101 (1%)
 Frame = +3

Query: 120 TTSNSVADCISAGRCGAQAKASGGERVHSSLNLAPADPERPAASAAAS*VKTLTGQQEPH 299
           TT+ S +D  + G   +++ ASG   V SS + + A    P++SAA+S   +      P 
Sbjct: 421 TTTGSTSDSSALGST-SESSASGSSAVSSSASGSSAASSSPSSSAASSSPSSSAASSSPS 479

Query: 300 QPLKTSSRKMQSKLNHVPARSAVST--PTSAATRRVAPAAA 416
               +SS    +  +  P+ SA S+  P+S+A+   AP+++
Sbjct: 480 SSAASSSPSSSASSSSSPSSSASSSSAPSSSASSSSAPSSS 520

>gb|AAO50776.1| similar to Dictyostelium discoideum (Slime mold). Spore coat
           protein SP96
          Length = 600

 Score = 40.4 bits (93), Expect = 0.006
 Identities = 29/101 (28%), Positives = 52/101 (50%), Gaps = 2/101 (1%)
 Frame = +3

Query: 120 TTSNSVADCISAGRCGAQAKASGGERVHSSLNLAPADPERPAASAAAS*VKTLTGQQEPH 299
           TT+ S +D  + G   +++ ASG   V SS + + A    P++SAA+S   +      P 
Sbjct: 421 TTTGSTSDSSALGST-SESSASGSSAVSSSASGSSAASSSPSSSAASSSPSSSAASSSPS 479

Query: 300 QPLKTSSRKMQSKLNHVPARSAVST--PTSAATRRVAPAAA 416
               +SS    +  +  P+ SA S+  P+S+A+   AP+++
Sbjct: 480 SSAASSSPSSSASSSSSPSSSASSSSAPSSSASSSSAPSSS 520

>sp|Q04503|DP87_DICDI Prespore protein DP87 precursor gi|217302|dbj|BAA03083.1| Dp87
           protein [Dictyostelium discoideum]
          Length = 555

 Score = 40.0 bits (92), Expect = 0.008
 Identities = 41/144 (28%), Positives = 62/144 (42%), Gaps = 8/144 (5%)
 Frame = +3

Query: 9   PNPSSTGRLACCPTNRTISSSYRPETAACSRLESASYTTSNSVADCISAGRCGAQA--KA 182
           P+  +  R  CCP++        P T A S +     TT+++VA   SA   G       
Sbjct: 416 PSNCTNTRFPCCPSHPIC---IHPSTTAASTIA----TTASTVATTTSATTAGTTTGGTT 468

Query: 183 SGGERVHSSL------NLAPADPERPAASAAAS*VKTLTGQQEPHQPLKTSSRKMQSKLN 344
           +GG    SS       + A + P   AAS+AAS         EP     +SS    S  +
Sbjct: 469 TGGSTSDSSAASSADSSAASSSPSSSAASSAAS--------SEPSSSAASSSAP-SSASS 519

Query: 345 HVPARSAVSTPTSAATRRVAPAAA 416
             P+ ++ S P+S+A+   A +AA
Sbjct: 520 SAPSSASSSAPSSSASSSAASSAA 543

>gb|AAK31375.1|AC084329_1 ppg3 [Leishmania major]
          Length = 1325

 Score = 37.7 bits (86), Expect = 0.037
 Identities = 30/138 (21%), Positives = 60/138 (42%), Gaps = 2/138 (1%)
 Frame = +3

Query: 15   PSSTGRLACCPTNRTISSSYRPETAACSRLESASYTTSNSVADCISAGRCGAQAKASGGE 194
            PSS+       ++   SSS    +A+ S   S+S +++ S +   +     +   AS   
Sbjct: 739  PSSSSSAPSASSSSAPSSSSSAPSASSSSAPSSSSSSAPSASSSSAPSSSSSAPSASSSS 798

Query: 195  RVHSSLNLAP--ADPERPAASAAAS*VKTLTGQQEPHQPLKTSSRKMQSKLNHVPARSAV 368
               SS + AP  +    P++S++A    + +           SS    S  +  P+ S+ 
Sbjct: 799  APSSSSSSAPSASSSSAPSSSSSAPSASSSSAPSSSSSAPSASSSSAPSSSSSAPSASSS 858

Query: 369  STPTSAATRRVAPAAAVP 422
            S P+S+++   A +++ P
Sbjct: 859  SAPSSSSSAPSASSSSAP 876

 Score = 37.4 bits (85), Expect = 0.049
 Identities = 33/138 (23%), Positives = 61/138 (43%)
 Frame = +3

Query: 9    PNPSSTGRLACCPTNRTISSSYRPETAACSRLESASYTTSNSVADCISAGRCGAQAKASG 188
            P+ SS+   +   +  + SSS  P +++ +   S+S   S+S +   SA    A + +S 
Sbjct: 731  PSASSSSAPSSSSSAPSASSSSAPSSSSSAPSASSSSAPSSSSSSAPSASSSSAPSSSSS 790

Query: 189  GERVHSSLNLAPADPERPAASAAAS*VKTLTGQQEPHQPLKTSSRKMQSKLNHVPARSAV 368
                 SS   AP+     A SA++S     +           SS    S  +  P+ S+ 
Sbjct: 791  APSASSSS--APSSSSSSAPSASSS-----SAPSSSSSAPSASSSSAPSSSSSAPSASSS 843

Query: 369  STPTSAATRRVAPAAAVP 422
            S P+S+++   A +++ P
Sbjct: 844  SAPSSSSSAPSASSSSAP 861

 Score = 35.4 bits (80), Expect = 0.19
 Identities = 35/139 (25%), Positives = 62/139 (44%), Gaps = 5/139 (3%)
 Frame = +3

Query: 15   PSSTGRLACCPTNRTISSSYRPETAACSRLESASYTTSNSVADCISAGRCGAQAKASGGE 194
            PSS+       ++   SSS    +A+ S   S+S  +S   A   SA    + A ++   
Sbjct: 816  PSSSSSAPSASSSSAPSSSSSAPSASSSSAPSSS--SSAPSASSSSAPSSSSSAPSASSS 873

Query: 195  RVHSSLNLAPADPERPAASAAAS*VKTLTGQQEPHQ-----PLKTSSRKMQSKLNHVPAR 359
               SS + AP+     A S+++S   + +    P       P  +SS    S  +  P+ 
Sbjct: 874  SAPSSSSSAPSASSSSAPSSSSSSAPSASSSSAPSSSSSSAPSASSSSAPSSSSSSAPSA 933

Query: 360  SAVSTPTSAATRRVAPAAA 416
            S+ S P+S+++   AP+A+
Sbjct: 934  SSSSAPSSSSSS--APSAS 950

 Score = 34.7 bits (78), Expect = 0.32
 Identities = 31/142 (21%), Positives = 60/142 (41%), Gaps = 6/142 (4%)
 Frame = +3

Query: 9    PNPSSTGRLACCPTNRTISSSYRPETAACSRLESASYTTSNSVADCISAGRCGAQAKASG 188
            P+ SS+   +   ++   SSS  P  ++ S   S+S   S S +   S+    A + +S 
Sbjct: 939  PSSSSSSAPSASSSSAPSSSSSAPSASSSSAPSSSSSAPSASSSSAPSSSSSSAPSASSS 998

Query: 189  GERVHSSLNLAPADPERPAASAAAS*VKTLTGQQEPHQPLKTSSRKMQSKLNHVPARSAV 368
                 SS   + +    P++S++A    + +           SS    S  +  P+ S+ 
Sbjct: 999  SAPSSSSSAPSASSSSAPSSSSSAPSASSSSAPSSSSSAPSASSSSAPSSSSSAPSASSS 1058

Query: 369  STPTSA------ATRRVAPAAA 416
            S P+S+      A+   AP+++
Sbjct: 1059 SAPSSSSSSAPSASSSSAPSSS 1080

 Score = 33.9 bits (76), Expect = 0.54
 Identities = 30/138 (21%), Positives = 63/138 (44%)
 Frame = +3

Query: 9    PNPSSTGRLACCPTNRTISSSYRPETAACSRLESASYTTSNSVADCISAGRCGAQAKASG 188
            P+ SS+   +   ++   +SS    +++ S   SAS +++ S +   +     + A +S 
Sbjct: 899  PSASSSSAPSSSSSSAPSASSSSAPSSSSSSAPSASSSSAPSSSSSSAPSASSSSAPSSS 958

Query: 189  GERVHSSLNLAPADPERPAASAAAS*VKTLTGQQEPHQPLKTSSRKMQSKLNHVPARSAV 368
                 +S + AP+     A SA++S   + +    P      SS    S  +  P+ S+ 
Sbjct: 959  SSAPSASSSSAPSS-SSSAPSASSSSAPSSSSSSAP----SASSSSAPSSSSSAPSASSS 1013

Query: 369  STPTSAATRRVAPAAAVP 422
            S P+S+++   A +++ P
Sbjct: 1014 SAPSSSSSAPSASSSSAP 1031

 Score = 33.5 bits (75), Expect = 0.70
 Identities = 28/117 (23%), Positives = 52/117 (43%), Gaps = 1/117 (0%)
 Frame = +3

Query: 75  RPETAACSRLESASYTT-SNSVADCISAGRCGAQAKASGGERVHSSLNLAPADPERPAAS 251
           +PET + S   SAS ++ S+S +   SA    A + +S      SS          P++S
Sbjct: 661 KPETESSSSAPSASSSSASSSSSSAPSASSSSAPSSSSSAPSASSS--------SAPSSS 712

Query: 252 AAAS*VKTLTGQQEPHQPLKTSSRKMQSKLNHVPARSAVSTPTSAATRRVAPAAAVP 422
           ++A    + +           SS    S  +  P+ S+ S P+S+++   A +++ P
Sbjct: 713 SSAPSASSSSAPSSSSSAPSASSSSAPSSSSSAPSASSSSAPSSSSSAPSASSSSAP 769

 Score = 33.1 bits (74), Expect = 0.92
 Identities = 31/138 (22%), Positives = 63/138 (45%)
 Frame = +3

Query: 9    PNPSSTGRLACCPTNRTISSSYRPETAACSRLESASYTTSNSVADCISAGRCGAQAKASG 188
            P+ SS+   +   +  + SSS  P +++ +   S+S   S+S +   SA    A + +S 
Sbjct: 671  PSASSSSASSSSSSAPSASSSSAPSSSSSAPSASSSSAPSSS-SSAPSASSSSAPSSSSS 729

Query: 189  GERVHSSLNLAPADPERPAASAAAS*VKTLTGQQEPHQPLKTSSRKMQSKLNHVPARSAV 368
                 SS +   +    P+AS++++             P  +SS    S  +  P+ S+ 
Sbjct: 730  APSASSS-SAPSSSSSAPSASSSSA------PSSSSSAPSASSSSAPSSSSSSAPSASSS 782

Query: 369  STPTSAATRRVAPAAAVP 422
            S P+S+++   A +++ P
Sbjct: 783  SAPSSSSSAPSASSSSAP 800

 Score = 32.0 bits (71), Expect = 2.0
 Identities = 33/142 (23%), Positives = 60/142 (42%), Gaps = 6/142 (4%)
 Frame = +3

Query: 9    PNPSSTGRLACCPTNRTISSSYRPETAACSRLESASYTTSNSVADCISAGRCGAQAKASG 188
            P+ SS+   +   ++   SSS  P  ++ S   S+S   S S +   S+      A +S 
Sbjct: 800  PSSSSSSAPSASSSSAPSSSSSAPSASSSSAPSSSSSAPSASSSSAPSSSSSAPSASSSS 859

Query: 189  GERVHSSLNLAPADP------ERPAASAAAS*VKTLTGQQEPHQPLKTSSRKMQSKLNHV 350
                 SS   A +          P+AS++++             P  +SS    S  +  
Sbjct: 860  APSSSSSAPSASSSSAPSSSSSAPSASSSSA-----PSSSSSSAPSASSSSAPSSSSSSA 914

Query: 351  PARSAVSTPTSAATRRVAPAAA 416
            P+ S+ S P+S+++   AP+A+
Sbjct: 915  PSASSSSAPSSSSSS--APSAS 934

 Score = 31.6 bits (70), Expect = 2.7
 Identities = 34/138 (24%), Positives = 63/138 (45%), Gaps = 2/138 (1%)
 Frame = +3

Query: 9    PNPSSTGRLACCPTNRTISSSYRPETAACSRLESASYTTSNSVADCISAGRCGAQAKASG 188
            P+ SS+   +   +  + SSS  P +++ +   S+S   S+S +   SA    A + +S 
Sbjct: 853  PSASSSSAPSSSSSAPSASSSSAPSSSSSAPSASSSSAPSSSSSSAPSASSSSAPSSSSS 912

Query: 189  GERVHSSLNLAPADPERPAASAAAS*VKTLTGQQEPHQPLKTSSRKMQSKLNHVPARSAV 368
                 SS + AP+     A SA++S   + +    P     +S+    S      + SA 
Sbjct: 913  SAPSASSSS-APSSSSSSAPSASSSSAPSSSSSSAPSAS-SSSAPSSSSSAPSASSSSAP 970

Query: 369  STPTSA--ATRRVAPAAA 416
            S+ +SA  A+   AP+++
Sbjct: 971  SSSSSAPSASSSSAPSSS 988

 Score = 30.4 bits (67), Expect = 6.0
 Identities = 33/148 (22%), Positives = 66/148 (44%), Gaps = 10/148 (6%)
 Frame = +3

Query: 9    PNPSSTGRLACCPTNRTISSSYRPETAACSRLESASYTTSNSVADCISAGRCGAQAKASG 188
            P+ SS+   +   +  + SSS  P +++ +   S+S   S+S +   SA    A + +S 
Sbjct: 686  PSASSSSAPSSSSSAPSASSSSAPSSSSSAPSASSSSAPSSS-SSAPSASSSSAPSSSSS 744

Query: 189  GERVHSSLNLAPADPERPAA------SAAAS*VKTLTGQQEPHQ----PLKTSSRKMQSK 338
                 SS +   +    P+A      S+++S   + +    P      P  +SS    S 
Sbjct: 745  APSASSS-SAPSSSSSAPSASSSSAPSSSSSSAPSASSSSAPSSSSSAPSASSSSAPSSS 803

Query: 339  LNHVPARSAVSTPTSAATRRVAPAAAVP 422
             +  P+ S+ S P+S+++   A +++ P
Sbjct: 804  SSSAPSASSSSAPSSSSSAPSASSSSAP 831

 Score = 30.0 bits (66), Expect = 7.8
 Identities = 33/138 (23%), Positives = 62/138 (44%), Gaps = 2/138 (1%)
 Frame = +3

Query: 9    PNPSSTGRLACCPTNRTISSSYRPETAACSRLESASYTTSNSVADCISAGRCGAQAKASG 188
            P+ SS+   +   +  + SSS  P +++ +   S+S   S+S +   SA    A + +S 
Sbjct: 838  PSASSSSAPSSSSSAPSASSSSAPSSSSSAPSASSSSAPSSS-SSAPSASSSSAPSSSSS 896

Query: 189  GERVHSSLNLAPADPERPAASAAAS*VKTLTGQQEPHQPLKTSSRKMQSKLNHVPARSAV 368
                 SS + AP+     A SA++S   + +    P     ++     S      + SA 
Sbjct: 897  SAPSASSSS-APSSSSSSAPSASSSSAPSSSSSSAPSASSSSAPSSSSSSAPSASSSSAP 955

Query: 369  STPTSA--ATRRVAPAAA 416
            S+ +SA  A+   AP+++
Sbjct: 956  SSSSSAPSASSSSAPSSS 973



EST assemble image


clone accession position
1 LCL056e02_r AV629319 1 424
2 MXL028c07_r BP094726 3 281




Chlamydomonas reinhardtii
Kazusa DNA Research Institute