KCC003240A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC003240A_C01 KCC003240A_c01
tcagtgcttgcttaatttgcagtgtaggtggcagaCCTAGGCCTCCTCGTTTAGCAGCAC
CGTCTGAGCAACCATGCAGTGCCTCCAGAAGCAGGCGCAGCGCTGTGGCGCGAAGAATGC
TCAGGCTTGCCCGATCAAGGCTAGCGGCGTGCGCTCCAGCCGGCGCGCCGTTAAGGCGCT
GGCCGTTGCTGCTGCTCCTGCTAAGAAGGCCCAGGCCTCCGACGTAAACGCCGTTGGTCT
GAAGGACGTGCCTCTGCGGTCGCTGTTCCCTGATGAGCCCAAGCCACCCGCCCCGGGCGC
CCCCAAGCTCAAGGTGGCGATTGTGGGCGGTGGCCTGGCGGGTCTGTCCACGGCCGTGGA
GCTGCTGGACCAGGGGTATGAGGTGGACATCTACGAGGGCCGCCAGTGGATTGGTGGTAA
GGTGGCCTCCTTCGTGGACAAGGACGGCAACCACATTGAGATGGGCCTGCACGTGTT


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC003240A_C01 KCC003240A_c01
         (477 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

sp|O49901|ZDS_NARPS Zeta-carotene desaturase, chloroplast precur...   110  1e-23
emb|CAC85667.1| zeta-carotene desaturase [Citrus sinensis]            108  2e-23
dbj|BAB68552.1| zeta-carotene desaturase [Citrus unshiu]              108  3e-23
gb|AAK51557.1|AF372617_1 zeta-carotene desaturase precursor [Cit...   108  3e-23
sp|Q9FV46|ZDS_TARER Zeta-carotene desaturase, chloroplast precur...   107  5e-23

>sp|O49901|ZDS_NARPS Zeta-carotene desaturase, chloroplast precursor (Carotene
           7,8-desaturase) gi|2924363|emb|CAA12062.1| zeta-carotene
           desaturase [Narcissus pseudonarcissus]
          Length = 574

 Score =  110 bits (274), Expect = 1e-23
 Identities = 61/101 (60%), Positives = 70/101 (68%)
 Frame = +2

Query: 173 KALAVAAAPAKKAQASDVNAVGLKDVPLRSLFPDEPKPPAPGAPKLKVAIVGGGLAGLST 352
           K  ++ +A   K     VNA        + LFP  P+P     PKLKVAI+G GLAG+ST
Sbjct: 29  KLFSIRSALDTKVSDMSVNAP-------KGLFP--PEPEHYRGPKLKVAIIGAGLAGMST 79

Query: 353 AVELLDQGYEVDIYEGRQWIGGKVASFVDKDGNHIEMGLHV 475
           AVELLDQG+EVDIYE RQ+IGGKV SFVDK GNHIEMGLHV
Sbjct: 80  AVELLDQGHEVDIYESRQFIGGKVGSFVDKRGNHIEMGLHV 120

>emb|CAC85667.1| zeta-carotene desaturase [Citrus sinensis]
          Length = 570

 Score =  108 bits (271), Expect = 2e-23
 Identities = 63/111 (56%), Positives = 72/111 (64%)
 Frame = +2

Query: 143 SGVRSSRRAVKALAVAAAPAKKAQASDVNAVGLKDVPLRSLFPDEPKPPAPGAPKLKVAI 322
           +GV  SR   K        +  A  SD++    K      LFP  P+P     PKLKVAI
Sbjct: 13  TGVSWSRVQEKCRRFCVRASLDANVSDMSVNAPK-----GLFP--PEPEHYRGPKLKVAI 65

Query: 323 VGGGLAGLSTAVELLDQGYEVDIYEGRQWIGGKVASFVDKDGNHIEMGLHV 475
           +G GLAG+STAVELLDQG+EVDIYE R +IGGKV SFVDK GNHIEMGLHV
Sbjct: 66  IGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFVDKRGNHIEMGLHV 116

>dbj|BAB68552.1| zeta-carotene desaturase [Citrus unshiu]
          Length = 570

 Score =  108 bits (270), Expect = 3e-23
 Identities = 63/111 (56%), Positives = 72/111 (64%)
 Frame = +2

Query: 143 SGVRSSRRAVKALAVAAAPAKKAQASDVNAVGLKDVPLRSLFPDEPKPPAPGAPKLKVAI 322
           +GV  SR   K        +  A  SD++    K      LFP  P+P     PKLKVAI
Sbjct: 13  TGVSWSRVQEKCPRFCVRASLDANVSDMSVNAPK-----GLFP--PEPEHYRGPKLKVAI 65

Query: 323 VGGGLAGLSTAVELLDQGYEVDIYEGRQWIGGKVASFVDKDGNHIEMGLHV 475
           +G GLAG+STAVELLDQG+EVDIYE R +IGGKV SFVDK GNHIEMGLHV
Sbjct: 66  IGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFVDKRGNHIEMGLHV 116

>gb|AAK51557.1|AF372617_1 zeta-carotene desaturase precursor [Citrus x paradisi]
          Length = 570

 Score =  108 bits (270), Expect = 3e-23
 Identities = 63/111 (56%), Positives = 72/111 (64%)
 Frame = +2

Query: 143 SGVRSSRRAVKALAVAAAPAKKAQASDVNAVGLKDVPLRSLFPDEPKPPAPGAPKLKVAI 322
           +GV  SR   K        +  A  SD++    K      LFP  P+P     PKLKVAI
Sbjct: 13  TGVSWSRVQEKCPRFCVRASLDANVSDMSVNAPK-----GLFP--PEPEHYRGPKLKVAI 65

Query: 323 VGGGLAGLSTAVELLDQGYEVDIYEGRQWIGGKVASFVDKDGNHIEMGLHV 475
           +G GLAG+STAVELLDQG+EVDIYE R +IGGKV SFVDK GNHIEMGLHV
Sbjct: 66  IGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFVDKRGNHIEMGLHV 116

>sp|Q9FV46|ZDS_TARER Zeta-carotene desaturase, chloroplast precursor (Carotene
           7,8-desaturase) gi|9971810|gb|AAG10425.1| zeta
           desaturase [Tagetes erecta]
          Length = 587

 Score =  107 bits (268), Expect = 5e-23
 Identities = 54/73 (73%), Positives = 60/73 (81%)
 Frame = +2

Query: 257 RSLFPDEPKPPAPGAPKLKVAIVGGGLAGLSTAVELLDQGYEVDIYEGRQWIGGKVASFV 436
           + LFP  P+P     PKLKVAI+G GLAG+STAVELLDQG+EVDIYE R +IGGKV SFV
Sbjct: 68  KGLFP--PEPEHYRGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRTFIGGKVGSFV 125

Query: 437 DKDGNHIEMGLHV 475
           DK GNHIEMGLHV
Sbjct: 126 DKQGNHIEMGLHV 138



EST assemble image


clone accession position
1 LCL053f03_r AV629169 1 468
2 MXL037e03_r BP095186 36 477




Chlamydomonas reinhardtii
Kazusa DNA Research Institute