KCC003239A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC003239A_C01 KCC003239A_c01
tcctgacgcccctgtacgaggaggatgtgatgtacgcgctggacagcaaggcgctggcca
aagagacgggcctgaaaatgCGCAAGATGACGGACCTGCTGGGCGAGACGGACGACTCCA
TCTCGCTCATGAGCTACCTCAAGGCCATGTTCCCGCAGGAGTGGTCCAACTTCAAGGAGC
GCATGAAGACGCTGAACCCGGACATCAACGTGAAAGACCTGTCGGAGCACGACTTCGCGC
CCGGCTGCGACATGTACGAGTTCAAGCTGGAGCTGCAGATGTGGGCCTCGCTGCGCGGCC
AGCTGCTGGCGCGCACGGTGCACGGCATGATGCTGAACGAGAAGGCGCTGGACGAGCTGG
CGCGGCTGGAGAACCCGCAGCCGCCCAACATGACGGAGCTGGAGTACAAGCGCTACATCC
ACCAGCTCACGTCGTGCAAGTTCGAGTACGTGGTGACGCCGCAGACGTACGGCAAGAACC
GGCTGAGCAAGGACCTGCGCCTCAAGTGGCTGGCTTCGTCCATCGACATCCTGATGGGCA
AGTACCCGCGGCTCAAGGTGGCGTTCCTGGACAACGCCGACAGCGACAACGGCCCCGCGC
AGTACAGCGTG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC003239A_C01 KCC003239A_c01
         (611 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_172136.1| callose synthase (1,3-beta-glucan synthase) fam...    97  1e-19
pir||F86200 protein F12K11.17 [imported] - Arabidopsis thaliana ...    97  1e-19
dbj|BAB89139.1| OJ1029_F04.4 [Oryza sativa (japonica cultivar-gr...    91  2e-17
dbj|BAB02389.1| glucan synthase-like protein [Arabidopsis thaliana]    88  8e-17
ref|NP_188075.1| callose synthase (1,3-beta-glucan synthase) fam...    86  4e-16

>ref|NP_172136.1| callose synthase (1,3-beta-glucan synthase) family [Arabidopsis
            thaliana]
          Length = 1933

 Score = 97.4 bits (241), Expect = 1e-19
 Identities = 72/219 (32%), Positives = 108/219 (48%), Gaps = 16/219 (7%)
 Frame = +3

Query: 3    LTPLYEEDVMYALDSKALAKETGLKMRKMTDLLGETDDSISLMSYLKAMFPQEWSNFKER 182
            LTP Y+EDV+Y+ +                +L  E +D I+++ YL+ ++P+EWSN+ ER
Sbjct: 1086 LTPYYKEDVLYSEE----------------ELNKENEDGITILFYLQRIYPEEWSNYCER 1129

Query: 183  MKTLNPDINVKDLSEHDFAPGCDMYEFKLELQMWASLRGQLLARTVHGMMLNEKAL---- 350
            +  L  +++ KD +E              +L+ W S RGQ L+RTV GMM    AL    
Sbjct: 1130 VNDLKRNLSEKDKAE--------------QLRQWVSYRGQTLSRTVRGMMYYRVALELQC 1175

Query: 351  -----DELARLENPQPPNMTELEYKRY---IHQLTSCKFEYVVTPQTYGKNRLSKDLRLK 506
                 +E A      P    E + K +      L   KF YVV+ Q YG  + S + R +
Sbjct: 1176 FQEYTEENATNGGYLPSESNEDDRKAFSDRARALADLKFTYVVSCQVYGNQKKSSESRDR 1235

Query: 507  WLASSIDILMGKYPRLKVAFLDNADSD-NGPAQ---YSV 611
               ++I  LM KYP L+VA++D  +   NG +Q   YSV
Sbjct: 1236 SCYNNILQLMLKYPSLRVAYIDEREETVNGKSQKVFYSV 1274

>pir||F86200 protein F12K11.17 [imported] - Arabidopsis thaliana
            gi|6692688|gb|AAF24822.1|AC007592_15 F12K11.17
            [Arabidopsis thaliana]
          Length = 1930

 Score = 97.4 bits (241), Expect = 1e-19
 Identities = 72/219 (32%), Positives = 108/219 (48%), Gaps = 16/219 (7%)
 Frame = +3

Query: 3    LTPLYEEDVMYALDSKALAKETGLKMRKMTDLLGETDDSISLMSYLKAMFPQEWSNFKER 182
            LTP Y+EDV+Y+ +                +L  E +D I+++ YL+ ++P+EWSN+ ER
Sbjct: 1083 LTPYYKEDVLYSEE----------------ELNKENEDGITILFYLQRIYPEEWSNYCER 1126

Query: 183  MKTLNPDINVKDLSEHDFAPGCDMYEFKLELQMWASLRGQLLARTVHGMMLNEKAL---- 350
            +  L  +++ KD +E              +L+ W S RGQ L+RTV GMM    AL    
Sbjct: 1127 VNDLKRNLSEKDKAE--------------QLRQWVSYRGQTLSRTVRGMMYYRVALELQC 1172

Query: 351  -----DELARLENPQPPNMTELEYKRY---IHQLTSCKFEYVVTPQTYGKNRLSKDLRLK 506
                 +E A      P    E + K +      L   KF YVV+ Q YG  + S + R +
Sbjct: 1173 FQEYTEENATNGGYLPSESNEDDRKAFSDRARALADLKFTYVVSCQVYGNQKKSSESRDR 1232

Query: 507  WLASSIDILMGKYPRLKVAFLDNADSD-NGPAQ---YSV 611
               ++I  LM KYP L+VA++D  +   NG +Q   YSV
Sbjct: 1233 SCYNNILQLMLKYPSLRVAYIDEREETVNGKSQKVFYSV 1271

>dbj|BAB89139.1| OJ1029_F04.4 [Oryza sativa (japonica cultivar-group)]
          Length = 1877

 Score = 90.5 bits (223), Expect = 2e-17
 Identities = 61/193 (31%), Positives = 93/193 (47%)
 Frame = +3

Query: 3    LTPLYEEDVMYALDSKALAKETGLKMRKMTDLLGETDDSISLMSYLKAMFPQEWSNFKER 182
            LTP Y E+V+Y+                  +L  + +D IS++ YL+ ++P EW NF ER
Sbjct: 1038 LTPYYNEEVLYSSH----------------ELNKKNEDGISILFYLQKIYPDEWKNFLER 1081

Query: 183  MKTLNPDINVKDLSEHDFAPGCDMYEFKLELQMWASLRGQLLARTVHGMMLNEKALDELA 362
            +          D    +   G     +  ++++WAS RGQ LARTV GMM   +AL+   
Sbjct: 1082 IGV--------DPENEEAVKG-----YMDDVRIWASYRGQTLARTVRGMMYYRRALELQC 1128

Query: 363  RLENPQPPNMTELEYKRYIHQLTSCKFEYVVTPQTYGKNRLSKDLRLKWLASSIDILMGK 542
              +        + E       +   KF YVV+ Q YG ++ SKD R K L  +I  LM  
Sbjct: 1129 YEDMTNAQADLDGEESARSKAIADIKFTYVVSCQLYGMHKASKDSREKGLYENILNLMLT 1188

Query: 543  YPRLKVAFLDNAD 581
            YP L++A++D  +
Sbjct: 1189 YPALRIAYIDEKE 1201

>dbj|BAB02389.1| glucan synthase-like protein [Arabidopsis thaliana]
          Length = 1972

 Score = 88.2 bits (217), Expect = 8e-17
 Identities = 66/198 (33%), Positives = 92/198 (46%), Gaps = 5/198 (2%)
 Frame = +3

Query: 3    LTPLYEEDVMYALDSKALAKETGLKMRKMTDLLGETDDSISLMSYLKAMFPQEWSNFKER 182
            LTP Y+ED+ Y+                 T+ L  T  S+S++ Y++ +FP EW NF ER
Sbjct: 1143 LTPHYQEDINYS-----------------TNELHSTKSSVSIIFYMQKIFPDEWKNFLER 1185

Query: 183  MKTLNPDINVKDLSEHDFAPGCDMYEFKLELQMWASLRGQLLARTVHGMMLNEKALDELA 362
            M   N D   K+  E              EL+ WAS RGQ L+RTV GMM   +AL   A
Sbjct: 1186 MGCDNLDALKKEGKEE-------------ELRNWASFRGQTLSRTVRGMMYCREALKLQA 1232

Query: 363  RLENPQPPNMTELEYKR-----YIHQLTSCKFEYVVTPQTYGKNRLSKDLRLKWLASSID 527
             L+        ++E         +  L   KF YVV+ Q +G  + S D      A  I 
Sbjct: 1233 FLDMADDEGYKDVERSNRPLAAQLDALADMKFTYVVSCQMFGAQKSSGDPH----AQDIL 1288

Query: 528  ILMGKYPRLKVAFLDNAD 581
             LM KYP L+VA+++  +
Sbjct: 1289 DLMIKYPSLRVAYVEERE 1306

>ref|NP_188075.1| callose synthase (1,3-beta-glucan synthase) family [Arabidopsis
            thaliana]
          Length = 1973

 Score = 85.9 bits (211), Expect = 4e-16
 Identities = 66/202 (32%), Positives = 92/202 (44%), Gaps = 9/202 (4%)
 Frame = +3

Query: 3    LTPLYEEDVMYALDSKALAKETGLKMRKMTDLLGETDDSISLMSYLKAMFPQEWSNFKER 182
            LTP Y+ED+ Y+                 T+ L  T  S+S++ Y++ +FP EW NF ER
Sbjct: 1140 LTPHYQEDINYS-----------------TNELHSTKSSVSIIFYMQKIFPDEWKNFLER 1182

Query: 183  MKTLNPDINVKDLSEHDFAPGCDMYEFKLELQMWASLRGQLLARTVHGMMLNEKAL---- 350
            M   N D   K+  E              EL+ WAS RGQ L+RTV GMM   +AL    
Sbjct: 1183 MGCDNLDALKKEGKEE-------------ELRNWASFRGQTLSRTVRGMMYCREALKLQA 1229

Query: 351  -----DELARLENPQPPNMTELEYKRYIHQLTSCKFEYVVTPQTYGKNRLSKDLRLKWLA 515
                 D+   LE  +    +       +  L   KF YVV+ Q +G  + S D      A
Sbjct: 1230 FLDMADDEDILEGYKDVERSNRPLAAQLDALADMKFTYVVSCQMFGAQKSSGDPH----A 1285

Query: 516  SSIDILMGKYPRLKVAFLDNAD 581
              I  LM KYP L+VA+++  +
Sbjct: 1286 QDILDLMIKYPSLRVAYVEERE 1307



EST assemble image


clone accession position
1 LCL053a07_r AV629145 1 452
2 MXL071h04_r BP097210 138 507
3 MXL059h06_r BP096511 138 611




Chlamydomonas reinhardtii
Kazusa DNA Research Institute