KCC003237A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC003237A_C01 KCC003237A_c01
tgttGGCAACCTGAGACACCTCTGCAACACCCCATTCGCCGTCCCTTCGGCGGGGAGAAG
CTTCTGAGCGCACACTGACACTGCTTAATGCTGGCGGGCGCTGTCAACAGCGCAACACGT
GCATATCTTACCCTTTGGCAACTGCGAATGCGGTCCTCGCTCACGCTCGGGCAGCGCCTG
CATGCGCAGCGTCATGGCGTCCCACCGCACTCCTTGGCAACTGGAACGAGTGCGAGGGCG
AACCATCGCATGGCTGTTAGTGCTTCCGCCACGCAGCGAAGTGGACCCGCCGGCAGCGAA
CCTGCCGACCAGCCACGCATTGGGCCACTGGCGCTGGCGGCCGGCACTGCGCTATGTCTC
ATGCTTGGCTCAGGCTTTGCGCCTGAGGGCAGCAGCGGTGCACTTGCGCCGCTGGGGGCG
CTG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC003237A_C01 KCC003237A_c01
         (423 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|XP_209160.2| similar to extraembryonic, spermatogenesis, hom...    36  0.11
dbj|BAC05130.1| unnamed protein product [Homo sapiens]                 36  0.11
ref|ZP_00013569.1| COG2076: Membrane transporters of cations and...    35  0.24
emb|CAB88653.2| hypothetical protein [Neurospora crassa]               35  0.24
pir||T48814 hypothetical protein 15E6.220 [imported] - Neurospor...    35  0.24

>ref|XP_209160.2| similar to extraembryonic, spermatogenesis, homeobox 1-like [Homo
           sapiens]
          Length = 466

 Score = 36.2 bits (82), Expect = 0.11
 Identities = 36/96 (37%), Positives = 44/96 (45%), Gaps = 1/96 (1%)
 Frame = +1

Query: 127 LTLWQLRMRSSLTLGQRLHAQRHGVPPHSLATGTSARANHRM-AVSASATQRSGPAGSEP 303
           L +W    R+ L   +RL  Q   VP      G  ARA   + A SASA QR GP+G  P
Sbjct: 64  LQVWFKNRRAKLARERRLQQQPQRVPGQR---GRGARAAPLVPAASASAPQR-GPSGILP 119

Query: 304 ADQPRIGPLALAAGTALCLMLGSGFAPEGSSGALAP 411
           A +P I  L  A G   C       A +G   AL+P
Sbjct: 120 AAEPTICSLHQAWGGPGCR------AQKGIPAALSP 149

>dbj|BAC05130.1| unnamed protein product [Homo sapiens]
          Length = 411

 Score = 36.2 bits (82), Expect = 0.11
 Identities = 36/96 (37%), Positives = 44/96 (45%), Gaps = 1/96 (1%)
 Frame = +1

Query: 127 LTLWQLRMRSSLTLGQRLHAQRHGVPPHSLATGTSARANHRM-AVSASATQRSGPAGSEP 303
           L +W    R+ L   +RL  Q   VP      G  ARA   + A SASA QR GP+G  P
Sbjct: 9   LQVWFKNRRAKLARERRLQQQPQRVPGQR---GRGARAAPLVPAASASAPQR-GPSGILP 64

Query: 304 ADQPRIGPLALAAGTALCLMLGSGFAPEGSSGALAP 411
           A +P I  L  A G   C       A +G   AL+P
Sbjct: 65  AAEPTICSLHQAWGGPGCR------AQKGIPAALSP 94

>ref|ZP_00013569.1| COG2076: Membrane transporters of cations and cationic drugs
           [Rhodospirillum rubrum]
          Length = 173

 Score = 35.0 bits (79), Expect = 0.24
 Identities = 24/69 (34%), Positives = 29/69 (41%), Gaps = 7/69 (10%)
 Frame = -2

Query: 419 APSGASAPLLPSGAKPEPSMRHSAVPAASA----SGPMRGWSAGSLPAG---PLRCVAEA 261
           +P+     L P G +P  + R    PA +      GP  GWS GS P G   P R   E 
Sbjct: 5   SPARRPRGLRPLGRRPHGAARWPLFPARALPRRNGGPGEGWSFGSSPPGRSPPERSHPER 64

Query: 260 LTAMRWFAL 234
             AM W  L
Sbjct: 65  RLAMTWLTL 73

>emb|CAB88653.2| hypothetical protein [Neurospora crassa]
          Length = 1992

 Score = 35.0 bits (79), Expect = 0.24
 Identities = 36/113 (31%), Positives = 50/113 (43%), Gaps = 10/113 (8%)
 Frame = +1

Query: 112  ATRAYLTLWQLRMRSSLTLGQRLHAQRH-GVPP---HSLATGTSARANHRMAVSASATQR 279
            A R  +  WQ R + + T    +HA    G  P   H++A  T+  A  R+A + SATQR
Sbjct: 1246 AIRMKVAEWQ-RKQVAATPAAPVHATATPGALPANHHTMAPATAPSAAQRIA-TPSATQR 1303

Query: 280  SGPAGSEPADQPRIGPLALAAGTALCLM------LGSGFAPEGSSGALAPLGA 420
            + P G  P+  PR    A  A T   L+       G   AP   +   A +GA
Sbjct: 1304 ANPPGGNPSAVPRTITAAAPAPTPAPLLPRAAPISGHPIAPSTVNNTNAAMGA 1356

>pir||T48814 hypothetical protein 15E6.220 [imported] - Neurospora crassa
          Length = 1952

 Score = 35.0 bits (79), Expect = 0.24
 Identities = 36/113 (31%), Positives = 50/113 (43%), Gaps = 10/113 (8%)
 Frame = +1

Query: 112  ATRAYLTLWQLRMRSSLTLGQRLHAQRH-GVPP---HSLATGTSARANHRMAVSASATQR 279
            A R  +  WQ R + + T    +HA    G  P   H++A  T+  A  R+A + SATQR
Sbjct: 1206 AIRMKVAEWQ-RKQVAATPAAPVHATATPGALPANHHTMAPATAPSAAQRIA-TPSATQR 1263

Query: 280  SGPAGSEPADQPRIGPLALAAGTALCLM------LGSGFAPEGSSGALAPLGA 420
            + P G  P+  PR    A  A T   L+       G   AP   +   A +GA
Sbjct: 1264 ANPPGGNPSAVPRTITAAAPAPTPAPLLPRAAPISGHPIAPSTVNNTNAAMGA 1316



EST assemble image


clone accession position
1 LCL052f12_r AV629128 1 423
2 MXL051f11_r BP096049 5 411




Chlamydomonas reinhardtii
Kazusa DNA Research Institute