KCC003235A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC003235A_C01 KCC003235A_c01
ccactcggccgtgcacatgtcccagcacgaggcgggtgcgtccgtgtttgaggtgtcgct
tggcaacctggcggcgcacaCCGAGGTGACGGTGGAGTTCAGCTACCTCCGGCTGCTTGA
CGCGTTCGGCGGCACGCTGGAGTGGAGCCACACCGCCACGTGGGTGCCGCCTTACGTGGG
CTCAGCGGGCGACGTGGCGACCGGCGTGGACAAGGTGGCGGCGGCGCTGCCCACCTTTGC
GCCCAAGGTGACCTACGTCCTCTCCTACGAGGTCACGGTGCGGGCGGAGGCGGGCACGGT
GCGTGCCATTGAGTCGCCCGAGCCTGTGACCGTGGAGCGTCCGATGCCAGGCATCAAACG
CGGCGAGGAGGAGCTCTGGTACGTGCGTCTGTCGGAGCAGGTCGCCGACCCCTCCAAGGA
CCTCTCACTGGCGATTGAGGTGGATCCCAAGGCCGCGCGCCGCAGCGGCCTGCGTGTGCA
GCGCACGCCCGCCTCCCGCGGCGGCGAGCAGCGCACTGTTGCGCTGGCCACATTTGTGCC
ACCGCTGCCCAGCCCGACCGCCGCCGGCACCGACGGCAAGCAGCAGCAGCTGCGCAAGGA
GATCT


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC003235A_C01 KCC003235A_c01
         (605 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|XP_210394.1| similar to Contains similarity to extensin (atE...    62  5e-09
ref|XP_233556.2| similar to Ser/Arg-related nuclear matrix prote...    61  1e-08
ref|NP_058079.1| Ser/Arg-related nuclear matrix protein; plenty-...    60  3e-08
gb|AAK53449.1| unknown [Streptomyces aureofaciens]                     59  4e-08
ref|NP_767161.1| blr0521 [Bradyrhizobium japonicum] gi|27348769|...    59  7e-08

>ref|XP_210394.1| similar to Contains similarity to extensin (atExt1) from
           Arabidopsis thaliana gb|U43627 and is rich in proline
           and glycine.  EST gb|Z37262 comes from this gene [Homo
           sapiens]
          Length = 394

 Score = 62.4 bits (150), Expect = 5e-09
 Identities = 63/202 (31%), Positives = 76/202 (37%), Gaps = 14/202 (6%)
 Frame = -1

Query: 569 CRRRSGWAAVAQMWPAQQCAARRRGRRACAAHAGRCGARPWDPPQSPVRGPWRGRRPAPT 390
           C R    A  A   PA+  A +R  RRA       CGA     P  P   P   R P   
Sbjct: 107 CLRSPLRATGAPCVPAEPPACQRNPRRASGTPRRACGA-----PCVPAEPPACQRNPLRA 161

Query: 389 DARTRAPPRRV*CLASDAPRSQARATQWHAPCPPPPAP*PRRRGRRSPWAQRWAAPPPPC 210
                 P     CL     RS  RAT   APC P   P  +R  RR+       A PP C
Sbjct: 162 SGAPGVPAEPPACL-----RSPLRATG--APCVPAEPPACQRNPRRASGTPGVPAEPPAC 214

Query: 209 ---PRRSPRRPLSPR-----KAAPTWRCGS------TPACRRTRQAAGGS*TPPSPRCAP 72
              PRR+   P  P      + +P   CG+       PAC+R+ + A G+   P     P
Sbjct: 215 LRNPRRASGTPCVPAEPPACQGSPLRACGAPGVPAEPPACQRSPRRASGA---PGVPAEP 271

Query: 71  PGCQATPQTRTHPPRAGTCARP 6
           P CQ  P   +  P  G  A P
Sbjct: 272 PACQRNPLRASGTP--GVPAEP 291

 Score = 45.4 bits (106), Expect = 6e-04
 Identities = 57/197 (28%), Positives = 72/197 (35%), Gaps = 6/197 (3%)
 Frame = -1

Query: 602 SPCAAAAACRRCRRRSGWAAVAQMWPAQQCAARRRGRRACAAHAGRCGARPWDPP---QS 432
           +PC  A     C+R    A+ A   PA+  A  R   RA  A        P +PP   ++
Sbjct: 144 APCVPAEP-PACQRNPLRASGAPGVPAEPPACLRSPLRATGAPCV-----PAEPPACQRN 197

Query: 431 PVRGPWRGRRPAPTDARTRAPPRR--V*CLASDAPRSQARATQ-WHAPCPPPPAP*PRRR 261
           P R       PA   A  R P R     C+ ++ P  Q    +   AP  P   P  +R 
Sbjct: 198 PRRASGTPGVPAEPPACLRNPRRASGTPCVPAEPPACQGSPLRACGAPGVPAEPPACQRS 257

Query: 260 GRRSPWAQRWAAPPPPCPRRSPRRPLSPRKAAPTWRCGSTPACRRTRQAAGGS*TPPSPR 81
            RR+  A    A PP C R   R   +P   A        PAC R    A G+   P   
Sbjct: 258 PRRASGAPGVPAEPPACQRNPLRASGTPGVPA------EPPACLRNPLRASGA---PCVP 308

Query: 80  CAPPGCQATPQTRTHPP 30
             PP C   P     PP
Sbjct: 309 AEPPACLRNPCVPAEPP 325

 Score = 40.8 bits (94), Expect = 0.015
 Identities = 60/210 (28%), Positives = 72/210 (33%), Gaps = 19/210 (9%)
 Frame = -1

Query: 599 PCAAAAACRRCRRRSGWAAVAQMWPAQQCAARRRGRRACAA---------------HAGR 465
           P    A  R  RR SG   V    PA+  A +    RAC A                A  
Sbjct: 208 PAEPPACLRNPRRASGTPCV----PAEPPACQGSPLRACGAPGVPAEPPACQRSPRRASG 263

Query: 464 CGARPWDPP---QSPVRGPWRGRRPAPTDARTRAPPRRV*CLASDAPRSQARATQW-HAP 297
               P +PP   ++P+R       PA   A  R P R     AS AP   A        P
Sbjct: 264 APGVPAEPPACQRNPLRASGTPGVPAEPPACLRNPLR-----ASGAPCVPAEPPACLRNP 318

Query: 296 CPPPPAP*PRRRGRRSPWAQRWAAPPPPCPRRSPRRPLSPRKAAPTWRCGSTPACRRTRQ 117
           C P   P   R   R+  A    A PP C  R+P  P  P            PAC R+  
Sbjct: 319 CVPAEPPACLRNPLRASGAPCVPAEPPAC-LRNPCVPSEP------------PACHRSPL 365

Query: 116 AAGGS*TPPSPRCAPPGCQATPQTRTHPPR 27
            A G+   P+    PP C  +P     P R
Sbjct: 366 CACGALCVPA---EPPACLWSPLRACGPAR 392

 Score = 38.1 bits (87), Expect = 0.098
 Identities = 39/136 (28%), Positives = 50/136 (36%), Gaps = 17/136 (12%)
 Frame = -1

Query: 362 RV*CLASDAP---RSQARATQWHAPCPPPPAP*PRRRGRRSPWAQRWAAPPPPCPRRSPR 192
           R  C+ ++ P   R+  RA    APC P   P  +R   R+  A    A PP C R   R
Sbjct: 16  RAPCVPAEPPACLRNPLRACG--APCVPAEPPACQRSPLRACGAPGVPAEPPACLRSPLR 73

Query: 191 RPLSPRKAAPTWRC--------------GSTPACRRTRQAAGGS*TPPSPRCAPPGCQAT 54
              +P   A    C                 PAC R+   A G+   P     PP CQ  
Sbjct: 74  ASGAPGVPAEPPACQRNPLRASGAPGVPAEPPACLRSPLRATGA---PCVPAEPPACQRN 130

Query: 53  PQTRTHPPRAGTCARP 6
           P+  +  PR   C  P
Sbjct: 131 PRRASGTPRR-ACGAP 145

>ref|XP_233556.2| similar to Ser/Arg-related nuclear matrix protein;
            plenty-of-prolines-101; serine/arginine repetitive matrix
            protein 1 [Rattus norvegicus]
          Length = 958

 Score = 61.2 bits (147), Expect = 1e-08
 Identities = 67/204 (32%), Positives = 92/204 (44%), Gaps = 14/204 (6%)
 Frame = -1

Query: 575  RRCRRRSGWAAVAQMWPAQQCAARRRGRRACAAHAGRCGARPWDPPQSPVRGPWRGRRPA 396
            RR R     +A       Q+  + RR RR+ +    R    P   P  P   P R RR +
Sbjct: 568  RRRRHSPSRSASPSPRKRQKETSPRRRRRSPSPPPARRRRSPSPAPPPPPPPPPRRRR-S 626

Query: 395  PTD---ARTRAPPRRV*CLASDAPRSQARATQ-WHAPCPPP------PAP*PRRRGRRSP 246
            PT     RT +PP R     S +PR  +   Q  ++P PPP      P P P+RR   SP
Sbjct: 627  PTPPPRRRTPSPPPR---RRSPSPRRYSPPIQRRYSPSPPPKRRTASPPPPPKRRASPSP 683

Query: 245  WAQRWAAPPPPCPRRSPRRPLSPRKA---APTWRCGSTPACRRTRQAAGGS*TPPSPRCA 75
              +R  +  PP  +RSP  P++ R++   +   R GS+P  R TR+A       P+ R +
Sbjct: 684  PPKRRVSHSPPPKQRSP--PVTKRRSPSLSSKHRKGSSPG-RSTREARS---PQPNKRHS 737

Query: 74   PPGCQATPQTRTHPP-RAGTCARP 6
            P      PQT + PP R G  A P
Sbjct: 738  PSPRPRAPQTSSPPPVRRGASASP 761

 Score = 41.2 bits (95), Expect = 0.012
 Identities = 40/145 (27%), Positives = 55/145 (37%)
 Frame = -1

Query: 572 RCRRRSGWAAVAQMWPAQQCAARRRGRRACAAHAGRCGARPWDPPQSPVRGPWRGRRPAP 393
           R R RS   +  +         RRR R    +++ R    P   P    R P R   P P
Sbjct: 334 RSRSRSKSRSRTRSRSPSHTRPRRRHRSRSRSYSPRRRPSPRRRPSPRRRTPPRRMPPPP 393

Query: 392 TDARTRAPPRRV*CLASDAPRSQARATQWHAPCPPPPAP*PRRRGRRSPWAQRWAAPPPP 213
              R+R+P RR    ++    S + ++   +  PP   P   +R    P   R  +P   
Sbjct: 394 RHRRSRSPGRRRRRSSASLSGSSSSSSSSRSRSPPKKPP---KRTSSPPRKTRRLSPSAS 450

Query: 212 CPRRSPRRPLSPRKAAPTWRCGSTP 138
            PRR   RP SP    P  R   TP
Sbjct: 451 PPRRR-HRPSSPATPPPKTRHSPTP 474

 Score = 40.0 bits (92), Expect = 0.026
 Identities = 48/150 (32%), Positives = 60/150 (40%), Gaps = 3/150 (2%)
 Frame = -1

Query: 443 PPQSPVRGPWRGRRPAPTDARTRAPPRRV*CLASDAPRSQARATQWHAPCPPPPAP*PRR 264
           P +S V+    GRR      R  +P R     AS +PR + + T          +P  RR
Sbjct: 556 PKRSHVKNGEVGRR------RRHSPSRS----ASPSPRKRQKET----------SPRRRR 595

Query: 263 RGRRSPWAQRWAAP---PPPCPRRSPRRPLSPRKAAPTWRCGSTPACRRTRQAAGGS*TP 93
           R    P A+R  +P   PPP P   PRR  SP    P  R  S P  RR+      S  P
Sbjct: 596 RSPSPPPARRRRSPSPAPPPPPPPPPRRRRSP-TPPPRRRTPSPPPRRRSPSPRRYS--P 652

Query: 92  PSPRCAPPGCQATPQTRTHPPRAGTCARPS 3
           P  R   P      +T + PP     A PS
Sbjct: 653 PIQRRYSPSPPPKRRTASPPPPPKRRASPS 682

 Score = 37.4 bits (85), Expect = 0.17
 Identities = 37/119 (31%), Positives = 52/119 (43%), Gaps = 8/119 (6%)
 Frame = -1

Query: 335 PRSQARA---TQWHAPCPPPPAP*PRRRGRRSPWAQRWAAPPPPCPRRSPRRPLSPRK-- 171
           PRS++R+   ++  +  P    P  R R R   ++ R    P P  R SPRR   PR+  
Sbjct: 333 PRSRSRSKSRSRTRSRSPSHTRPRRRHRSRSRSYSPR--RRPSPRRRPSPRRRTPPRRMP 390

Query: 170 AAPTWRCGSTPACRRTRQAA---GGS*TPPSPRCAPPGCQATPQTRTHPPRAGTCARPS 3
             P  R   +P  RR R +A   G S +  S R   P  +  P+  + PPR      PS
Sbjct: 391 PPPRHRRSRSPGRRRRRSSASLSGSSSSSSSSRSRSPP-KKPPKRTSSPPRKTRRLSPS 448

>ref|NP_058079.1| Ser/Arg-related nuclear matrix protein; plenty-of-prolines-101;
            serine/arginine repetitive matrix protein 1 [Mus
            musculus] gi|3153821|gb|AAC17422.1|
            plenty-of-prolines-101; POP101; SH3-philo-protein [Mus
            musculus]
          Length = 897

 Score = 59.7 bits (143), Expect = 3e-08
 Identities = 69/219 (31%), Positives = 92/219 (41%), Gaps = 20/219 (9%)
 Frame = -1

Query: 602  SPCAAAAACRRCRRR--SGWAAVAQMW--PAQQCAARRRGRRACAAHAGRCGARPWDPPQ 435
            SP  +A+   R R++  S    + + W  P  + + RRR      A   R  + P  PP 
Sbjct: 522  SPSRSASPSPRKRQKETSPRMQMGKRWQSPVTKSSRRRRSPSPPPARRRRSPS-PAPPPP 580

Query: 434  SPVRGPWRGRRPAPTDARTRA--PPRRV*CLASDAPRSQARATQW-HAPCPPPPAP*PRR 264
             P   P R R P P   R     PPRR     S +PR  +   Q  ++P PPP     RR
Sbjct: 581  PPPPPPRRRRSPTPPPRRRTPSPPPRR----RSPSPRRYSPPIQRRYSPSPPPK----RR 632

Query: 263  RGRRSPWAQRWAAPPPPCPRRSPRRPLSPRKAAPT------------WRCGSTPACRRTR 120
                 P  +R A+P PP  RR    P  P++ +PT             R GS+P  R TR
Sbjct: 633  TASPPPPPKRRASPSPPPKRRVSHSP-PPKQRSPTVTKRRSPSLSSKHRKGSSPG-RSTR 690

Query: 119  QAAGGS*TPPSPRCAPPGCQATPQTRTHPP-RAGTCARP 6
            +A       P+ R +P      PQT + PP R G  A P
Sbjct: 691  EARS---PQPNKRHSPSPRPRAPQTSSPPPVRRGASASP 726

 Score = 42.4 bits (98), Expect = 0.005
 Identities = 43/154 (27%), Positives = 60/154 (38%), Gaps = 1/154 (0%)
 Frame = -1

Query: 572 RCRRRSGWAAVAQMWPAQQCAARRRGRRACAAHAGRCGARPWDPPQSPVRGPWRGRRPAP 393
           R R RS   +  +         RRR R    +++ R    P   P    R P R   P P
Sbjct: 275 RSRSRSKSRSRTRSRSPSHTRPRRRHRSRSRSYSPRRRPSPRRRPSPRRRTPPRRMPPPP 334

Query: 392 TDARTRAPPRRV*CLASDAPRSQARATQWHAPCPPPPAP*PRRRGRRSPWAQRWAAPPPP 213
              R+R+P RR    ++    S + ++   +  PP   P   +R    P   R  +P   
Sbjct: 335 RHRRSRSPGRRRRRSSASLSGSSSSSSSSRSRSPPKKPP---KRTSSPPRKTRRLSPSAS 391

Query: 212 CPRRSPRRPLSPRKAAPTWRCGSTP-ACRRTRQA 114
            PRR   RP SP    P  R   TP    RTR++
Sbjct: 392 PPRRR-HRPSSPATPPPKTRHSPTPQQSNRTRKS 424

 Score = 37.4 bits (85), Expect = 0.17
 Identities = 50/173 (28%), Positives = 71/173 (40%), Gaps = 5/173 (2%)
 Frame = -1

Query: 506 RRRGRRACAAHAGRCGARPWDPPQSPVRGPWRGRRPAPTDARTRAP-PRRV*CLASDAPR 330
           RR+ +++ +       +    P +S V+    GRR   + +R+ +P PR+       +PR
Sbjct: 484 RRQNQQSSSDSGSSSTSEDERPKRSHVKNGEVGRRRRLSPSRSASPSPRKR--QKETSPR 541

Query: 329 SQARATQWHAPCPPPPAP*PRRRGRRSPWAQRWAAP----PPPCPRRSPRRPLSPRKAAP 162
            Q    +W +P         RRR    P A+R  +P    PPP P   PRR  SP    P
Sbjct: 542 MQM-GKRWQSPVTKSSR---RRRSPSPPPARRRRSPSPAPPPPPPPPPPRRRRSP-TPPP 596

Query: 161 TWRCGSTPACRRTRQAAGGS*TPPSPRCAPPGCQATPQTRTHPPRAGTCARPS 3
             R  S P  RR+      S  PP  R   P      +T + PP     A PS
Sbjct: 597 RRRTPSPPPRRRSPSPRRYS--PPIQRRYSPSPPPKRRTASPPPPPKRRASPS 647

 Score = 37.4 bits (85), Expect = 0.17
 Identities = 37/119 (31%), Positives = 52/119 (43%), Gaps = 8/119 (6%)
 Frame = -1

Query: 335 PRSQARA---TQWHAPCPPPPAP*PRRRGRRSPWAQRWAAPPPPCPRRSPRRPLSPRK-- 171
           PRS++R+   ++  +  P    P  R R R   ++ R    P P  R SPRR   PR+  
Sbjct: 274 PRSRSRSKSRSRTRSRSPSHTRPRRRHRSRSRSYSPR--RRPSPRRRPSPRRRTPPRRMP 331

Query: 170 AAPTWRCGSTPACRRTRQAA---GGS*TPPSPRCAPPGCQATPQTRTHPPRAGTCARPS 3
             P  R   +P  RR R +A   G S +  S R   P  +  P+  + PPR      PS
Sbjct: 332 PPPRHRRSRSPGRRRRRSSASLSGSSSSSSSSRSRSPP-KKPPKRTSSPPRKTRRLSPS 389

>gb|AAK53449.1| unknown [Streptomyces aureofaciens]
          Length = 579

 Score = 59.3 bits (142), Expect = 4e-08
 Identities = 70/209 (33%), Positives = 81/209 (38%), Gaps = 13/209 (6%)
 Frame = -1

Query: 593 AAAAACRRCRRRSGWAAVAQMWPAQQCAARRRGRRACAAHAGRCGARPWDPPQSPVRGPW 414
           A  + CR CR     A V    PA    A R    A + +A    ARP      P R P 
Sbjct: 364 ARGSRCRCCRG----AGVEPEGPANGAGAGRP--TATSGYARPQHARP------PARAP- 410

Query: 413 RGRRPAPTDARTRAPPRRV*CLASDAPRSQARATQWHAPCPPPPAP*PRRRGRRSPWAQR 234
            G RPAPT  R  + P R         R  +  T+  AP P P AP    R   +P   R
Sbjct: 411 PGPRPAPT--RAASTPART------GSRPASPPTRPTAPSPAPAAP---PRAAAAPTPAR 459

Query: 233 WAAPPP----PCPRRSPR----RPLSPR-----KAAPTWRCGSTPACRRTRQAAGGS*TP 93
              PPP    P  RR P     RP S R       AP    G+ P  RR R     +  P
Sbjct: 460 RPPPPPTPPVPRARRGPAAGNGRPPSTRDRTAGTRAPASPPGAPPPVRRRRPPPPRAPPP 519

Query: 92  PSPRCAPPGCQATPQTRTHPPRAGTCARP 6
             P    P  +ATP+ R  PPR    ARP
Sbjct: 520 HHPSARNPSARATPRPRP-PPRPSAAARP 547

 Score = 48.1 bits (113), Expect = 9e-05
 Identities = 53/185 (28%), Positives = 62/185 (32%), Gaps = 10/185 (5%)
 Frame = -1

Query: 527 PAQQCAARRRGRRACAAHAGRCGARPWDPPQSPVRGPWRGRRPAPTDARTRAPPRRV*CL 348
           P +    R R  RA  +   RC       P+ P  G   GR   PT     A P+     
Sbjct: 351 PRRSAPGRARRIRARGSRC-RCCRGAGVEPEGPANGAGAGR---PTATSGYARPQHA--- 403

Query: 347 ASDAPRSQARATQWHAPCPPPPAP*PRRRGRRSPWAQRWAAPPPPCPRRSPRRPLSPRKA 168
                R  ARA     P P   A  P R G R          P P P   PR   +P  A
Sbjct: 404 -----RPPARAPPGPRPAPTRAASTPARTGSRPASPPTRPTAPSPAPAAPPRAAAAPTPA 458

Query: 167 APTWRCGSTPACRRTRQAAGGS*TPPSPR---------CAPPGC-QATPQTRTHPPRAGT 18
                  + P  R  R  A G+  PPS R          +PPG      + R  PPRA  
Sbjct: 459 RRPPPPPTPPVPRARRGPAAGNGRPPSTRDRTAGTRAPASPPGAPPPVRRRRPPPPRAPP 518

Query: 17  CARPS 3
              PS
Sbjct: 519 PHHPS 523

 Score = 45.1 bits (105), Expect = 8e-04
 Identities = 50/155 (32%), Positives = 60/155 (38%), Gaps = 8/155 (5%)
 Frame = -1

Query: 602 SPCAAAAACRRCRRRSGWAAVAQMWPAQQCAARRRGRRACAAHAGRCGARPWDPPQSPV- 426
           +P  AA+   R   R          P+   AA  R     AA A     RP  PP  PV 
Sbjct: 416 APTRAASTPARTGSRPASPPTRPTAPSPAPAAPPR-----AAAAPTPARRPPPPPTPPVP 470

Query: 425 ---RGP--WRGRRPAPTD--ARTRAPPRRV*CLASDAPRSQARATQWHAPCPPPPAP*PR 267
              RGP    GR P+  D  A TRAP          +P       +   P PPP AP P 
Sbjct: 471 RARRGPAAGNGRPPSTRDRTAGTRAPA---------SPPGAPPPVRRRRP-PPPRAPPPH 520

Query: 266 RRGRRSPWAQRWAAPPPPCPRRSPRRPLSPRKAAP 162
               R+P A+    P PP    +  RP  P +AAP
Sbjct: 521 HPSARNPSARATPRPRPPPRPSAAARPEPPPRAAP 555

 Score = 37.0 bits (84), Expect = 0.22
 Identities = 44/126 (34%), Positives = 46/126 (35%), Gaps = 13/126 (10%)
 Frame = -1

Query: 500 RGRRACAAHAGR--------CGAR-PWDPPQSPVRGPWRGRRPAPTDARTRAPPRRV*CL 348
           R RR  AA  GR         G R P  PP +P   P R RRP P     RAPP      
Sbjct: 471 RARRGPAAGNGRPPSTRDRTAGTRAPASPPGAPP--PVRRRRPPPP----RAPPPH---- 520

Query: 347 ASDAPRSQARATQWHAPCPPPPAP*PRRRGRRSPWAQRWAAPPP----PCPRRSPRRPLS 180
              A    ARAT       P P P PR      P     AAP P    P P   PR P  
Sbjct: 521 HPSARNPSARAT-------PRPRPPPRPSAAARPEPPPRAAPGPSGTAPGPPSGPRSPSP 573

Query: 179 PRKAAP 162
             +  P
Sbjct: 574 LHRRTP 579

 Score = 33.9 bits (76), Expect = 1.8
 Identities = 51/165 (30%), Positives = 62/165 (36%), Gaps = 29/165 (17%)
 Frame = +3

Query: 99  SATSGCLTRSAARWSGATPPRGCRLTWAQRATWRPAWTRWRRRCPPLRPR*PT---SSPT 269
           +ATSG      AR     PP G R     RA   PA T  R   PP RP  P+   ++P 
Sbjct: 392 TATSGYARPQHARPPARAPP-GPRPA-PTRAASTPARTGSRPASPPTRPTAPSPAPAAPP 449

Query: 270 RSRCGRRRARCVPLSRPSL*PWSVRCQASNAAR------RSSGTCV----------CRSR 401
           R+      AR  P       P + R  A+   R      R++GT             R R
Sbjct: 450 RAAAAPTPARRPPPPPTPPVPRARRGPAAGNGRPPSTRDRTAGTRAPASPPGAPPPVRRR 509

Query: 402 SPTPPRTS--------HWRLRWIPRPRAAAACVCSAR--PPPAAA 506
            P PPR          +   R  PRPR       +AR  PPP AA
Sbjct: 510 RPPPPRAPPPHHPSARNPSARATPRPRPPPRPSAAARPEPPPRAA 554

>ref|NP_767161.1| blr0521 [Bradyrhizobium japonicum] gi|27348769|dbj|BAC45786.1|
           blr0521 [Bradyrhizobium japonicum USDA 110]
          Length = 745

 Score = 58.5 bits (140), Expect = 7e-08
 Identities = 55/164 (33%), Positives = 65/164 (39%), Gaps = 14/164 (8%)
 Frame = -1

Query: 452 PWDPPQSPVRGPWRGRRPAPTDARTRAPPRRV*CLASDAPRSQARATQWHA---PCPPPP 282
           P   P+ P +GP  G  P    AR  APP         A    A A    A   P PPPP
Sbjct: 44  PDGKPKQPPKGP-PGAAPPAAPARPAAPPPAAAPPHPPAAPPPAAAPPRPAAPPPPPPPP 102

Query: 281 AP*PRRRGRRSPWAQRWAAPPPPCPRRSPRRPLSPRKAAPTWRCGSTPACRRTRQAAGGS 102
           A  P             A PPPP P  +P++P  P  AAP     + P       AA  +
Sbjct: 103 AARP-------------APPPPPPPPAAPKQPSPPPAAAPQQHAPTPPP--PAPPAARPA 147

Query: 101 *TPPSPRCA-----------PPGCQATPQTRTHPPRAGTCARPS 3
            TPP+P  A           PP  + TP T   PP AG  ARP+
Sbjct: 148 PTPPAPPPAAAPQHAPPPPPPPAARPTP-TPPPPPPAGPAARPT 190

 Score = 53.1 bits (126), Expect = 3e-06
 Identities = 66/213 (30%), Positives = 72/213 (32%), Gaps = 62/213 (29%)
 Frame = -1

Query: 455 RPWDPPQSPVRGPWRGRRPAPTDARTRAPPRRV*CLASDAPRSQARATQWHAPCPPPPAP 276
           RP  PP  P   P    RPAP       PP       S  P   A A Q HAP PPPPAP
Sbjct: 91  RPAAPPPPP---PPPAARPAPPPP---PPPPAAPKQPSPPP---AAAPQQHAPTPPPPAP 141

Query: 275 *PRRRGRRSPWAQRWAA--------PPPPCPRRSPR---------------------RPL 183
            P  R   +P A   AA        PPPP  R +P                       P+
Sbjct: 142 -PAARPAPTPPAPPPAAAPQHAPPPPPPPAARPTPTPPPPPPAGPAARPTPAPTATPTPV 200

Query: 182 SPRKAAPTWRCGS-----------------TPACRRTRQAAGGS*TPPS--PRCAPPGCQ 60
           +P  AAPT R GS                 TPA   T         PP+  P   PPG +
Sbjct: 201 APPPAAPTARPGSPAPAATPAPTPTPAPTATPAPTATPAPGSTPGAPPAGRPGAPPPGVR 260

Query: 59  --------------ATPQTRTHPPRAGTCARPS 3
                         ATP   T P   GT   PS
Sbjct: 261 PGSPPAAGSPPAPGATPAPTTTPAPGGTATPPS 293

 Score = 50.8 bits (120), Expect = 1e-05
 Identities = 45/152 (29%), Positives = 51/152 (32%)
 Frame = -1

Query: 458 ARPWDPPQSPVRGPWRGRRPAPTDARTRAPPRRV*CLASDAPRSQARATQWHAPCPPPPA 279
           A P  PP  P   P     P P  A  +  P         AP     A     P P PPA
Sbjct: 93  AAPPPPPPPPAARPAPPPPPPPPAAPKQPSPPPAAAPQQHAPTPPPPAPPAARPAPTPPA 152

Query: 278 P*PRRRGRRSPWAQRWAAPPPPCPRRSPRRPLSPRKAAPTWRCGSTPACRRTRQAAGGS* 99
           P P    + +P       PPPP  R +P  P  P  A P  R    P    T  A     
Sbjct: 153 PPPAAAPQHAP-----PPPPPPAARPTPTPP-PPPPAGPAARPTPAPTATPTPVA----- 201

Query: 98  TPPSPRCAPPGCQATPQTRTHPPRAGTCARPS 3
            PP+   A PG  A   T    P     A P+
Sbjct: 202 PPPAAPTARPGSPAPAATPAPTPTPAPTATPA 233

 Score = 50.4 bits (119), Expect = 2e-05
 Identities = 57/162 (35%), Positives = 61/162 (37%), Gaps = 11/162 (6%)
 Frame = -1

Query: 458 ARPWD-PPQSPVRGPWRGRRPAPTDARTR-APPRRV*CLASDAPRSQARATQWHAPCP-- 291
           ARP   PP  P  GP     PAPT   T  APP         +P   A       P P  
Sbjct: 171 ARPTPTPPPPPPAGPAARPTPAPTATPTPVAPPPAAPTARPGSPAPAATPAPTPTPAPTA 230

Query: 290 -PPPAP*PRRRGRR-SPWAQRWAAPPPPCPRRSPRRPLSPRKAAPTWRCGSTPACRRTRQ 117
            P P   P       +P A R  APPP        RP SP  A      G+TPA   T  
Sbjct: 231 TPAPTATPAPGSTPGAPPAGRPGAPPPGV------RPGSPPAAGSPPAPGATPA-PTTTP 283

Query: 116 AAGGS*TPPSPRCAP-----PGCQATPQTRTHPPRAGTCARP 6
           A GG+ TPPS R  P     PG  ATP     P   G    P
Sbjct: 284 APGGTATPPSGRPGPASTPAPGA-ATPAPTATPAPGGALTPP 324



EST assemble image


clone accession position
1 LCL058c04_r AV629409 1 437
2 LCL051c12_r AV629069 187 605
3 LCL097c03_r AV631629 291 407




Chlamydomonas reinhardtii
Kazusa DNA Research Institute