KCC003227A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC003227A_C01 KCC003227A_c01
tcagcatatactatataGATAGAAATACCTGTAGGACCAAACGAGGCTGCGGAGACAGAA
CAGTCCCACACAGTCCCGAAATTGCAGCTACAGGCAAACGCACAGACGAGGTCCCAGCCC
CACAAGCTGGCTTCATTGTAGTATTTGATACCGAGTGGAGATAGCGAGGCGAGCATAGGC
GCTCGAGCCCGGCTTCGGCAGAATGGCAAAGAAGAAGCTTGGCAATCCCGGTTCGCCGCC
CAAGCCTCGTCGGCCCACTGGGTACTGGAGAGTCTTCAATGCATGGTGGCGTGATCGCCT
TGAGAGCACCGGCCGGCGCCCCACGGTGGAGGAGATGACGACCTGGTACCGGTCCAACGC
ACTGCTGGTGTGGGGCCCCAAGGACCTGCCCCCGATTGAGGACATGAAGCAGTTGAGCAA
GGGCATGCGCTCGACGAAGAACGTGCGCGCCTACTTTCAAGAGTACCGCGC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC003227A_C01 KCC003227A_c01
         (471 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_821742.1| hypothetical protein [Streptomyces avermitilis ...    38  0.068
gb|AAG13537.1|AC023240_10 unknown protein [Oryza sativa] gi|3143...    36  0.26
gb|AAB57629.1| F25451_2 [Homo sapiens]                                 36  0.26
ref|NP_077297.2| hypothetical protein MGC10433 [Homo sapiens] gi...    36  0.26
dbj|BAC57029.1| protomycinolide IV synthase 2 [Micromonospora gr...    35  0.34

>ref|NP_821742.1| hypothetical protein [Streptomyces avermitilis MA-4680]
           gi|29604206|dbj|BAC68277.1| hypothetical protein
           [Streptomyces avermitilis MA-4680]
          Length = 481

 Score = 37.7 bits (86), Expect = 0.068
 Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
 Frame = -2

Query: 440 SSSSACPCSTASCPQSGAGPWGPTPAVRWTGTRSSSPPPW-GAG-RCSQGDHATMH*RLS 267
           S+ +A   +++ CP  G+  W  T    W+ T S+ PPPW G G  C+    +T     S
Sbjct: 368 SAWAATGTTSSRCPVPGSHSWWAT----WSATASTPPPPWAGCGPPCAPSPTSTCRPTNS 423

Query: 266 STQWADEAWAANRDCQASSLP 204
           S  W   + A    C   SLP
Sbjct: 424 SPTWTTSSSA----CPPKSLP 440

>gb|AAG13537.1|AC023240_10 unknown protein [Oryza sativa] gi|31432824|gb|AAP54411.1| unknown
           protein [Oryza sativa (japonica cultivar-group)]
          Length = 104

 Score = 35.8 bits (81), Expect = 0.26
 Identities = 34/97 (35%), Positives = 37/97 (38%), Gaps = 1/97 (1%)
 Frame = +3

Query: 114 PAPQAGFIVVFDTEWR*RGEHRRSSPASAEWQRRSLAIPVRRPSLVGPLGTGESSMHGGV 293
           PA  AG  VV   E R  G  RR +P    W+RR LA P R P+                
Sbjct: 18  PAEAAG--VVAQRERRRYGWQRRGAPL---WRRRRLARPARAPTHAS------------- 59

Query: 294 IALRAPAGAPRWRR*RPGTGPT-HCWCGAPRTCPRLR 401
                  G  RW R R GT    H W G  R CP  R
Sbjct: 60  ----GARGVARWSRRRRGTSAALHRWLG--RHCPSRR 90

>gb|AAB57629.1| F25451_2 [Homo sapiens]
          Length = 339

 Score = 35.8 bits (81), Expect = 0.26
 Identities = 33/101 (32%), Positives = 43/101 (41%), Gaps = 13/101 (12%)
 Frame = -3

Query: 445 HVLRRAHALAQLLHVLNRGQVLGAPHQQCVGP----VPGRHLL------HRGAPAGALKA 296
           HVL+RA +         R   L  PHQ  VGP     PG  ++        G P G++ A
Sbjct: 23  HVLQRADSALSSAAAGPRPMALRPPHQALVGPPLPGPPGPPMMLPPMARAPGPPLGSMAA 82

Query: 295 ITPPCIEDSPVPSGPTRLGRRTGIA---KLLLCHSAEAGLE 182
           + PP  E    P+ P  LG   G+    K     +A AGLE
Sbjct: 83  LRPPLEE----PAAPRELGLGLGLGLKEKEEAVVAAAAGLE 119

>ref|NP_077297.2| hypothetical protein MGC10433 [Homo sapiens]
           gi|13278888|gb|AAH04204.1| Hypothetical protein MGC10433
           [Homo sapiens]
          Length = 480

 Score = 35.8 bits (81), Expect = 0.26
 Identities = 33/101 (32%), Positives = 43/101 (41%), Gaps = 13/101 (12%)
 Frame = -3

Query: 445 HVLRRAHALAQLLHVLNRGQVLGAPHQQCVGP----VPGRHLL------HRGAPAGALKA 296
           HVL+RA +         R   L  PHQ  VGP     PG  ++        G P G++ A
Sbjct: 164 HVLQRADSALSSAAAGPRPMALRPPHQALVGPPLPGPPGPPMMLPPMARAPGPPLGSMAA 223

Query: 295 ITPPCIEDSPVPSGPTRLGRRTGIA---KLLLCHSAEAGLE 182
           + PP  E    P+ P  LG   G+    K     +A AGLE
Sbjct: 224 LRPPLEE----PAAPRELGLGLGLGLKEKEEAVVAAAAGLE 260

>dbj|BAC57029.1| protomycinolide IV synthase 2 [Micromonospora griseorubida]
          Length = 1843

 Score = 35.4 bits (80), Expect = 0.34
 Identities = 32/86 (37%), Positives = 38/86 (43%), Gaps = 20/86 (23%)
 Frame = -2

Query: 455  SRRARSSSSACPCS----TASC-----------PQSGAGPWGPTPAVRWTGTRSSSPPPW 321
            +RR RS+SS  PC+    T SC           P   A P GP P     GT  +SPP  
Sbjct: 1599 ARRRRSTSSTWPCALAGRTPSCYPCDSTRPTVGPLRRARP-GPCPTRSGAGTPPASPPGG 1657

Query: 320  GAGRCSQG-----DHATMH*RLSSTQ 258
            G+GR   G      HA    RLS+ Q
Sbjct: 1658 GSGRPRFGLVERLAHAPRSERLSTLQ 1683



EST assemble image


clone accession position
1 MXL053c09_r BP096134 1 417
2 LCL086g02_r AV630947 18 166
3 LCL047b10_r AV628792 36 471




Chlamydomonas reinhardtii
Kazusa DNA Research Institute