KCC003226A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC003226A_C01 KCC003226A_c01
atctgttataacttgaTAAGCGTTTTCACAGACATTAGACCCGCACTGAGGCAAGACCGT
GCGCCCAGTGTGTATGTAACGGCAAGGGCACATTTGCGGAGCCGTTAGGGCTCGCCCGTG
TAAGCCACTCGAGGTTCTTAGAAGGATGAATCTCAACCGCACCGCCTGTCTGCGGGTTTG
CTGGAGCACAGACCGCGCAGCCTTAGCTCGAGACAAAGACACGTCGGAGAACTTTGCTCC
GGCGTGCTTGCTCCATTGAGTTGTAGCGCGCTCCCAACCTAATCTCAGAGAAGGTCGCTC
ACAACGTGGGCAGGAGCTCGCTCACAAAGTGGGTCATCGCGTTGCTCCCTCCGGTCACCG
ACCGCGCGCCGCCAGTGCTTGAGCACTTGAAGGCACTGGCCAGCGGCTGGGTTTATCGCC
AGGGCAACGCCCG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC003226A_C01 KCC003226A_c01
         (433 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|XP_172581.3| similar to hypothetical protein [Homo sapiens]        32  1.5
emb|CAD38622.1| hypothetical protein [Homo sapiens]                    32  1.5
emb|CAC36272.1| bA528A10.3.2 (novel protein similar to KIAA0161,...    32  1.5
dbj|BAC92441.1| hypothetical protein [Oryza sativa (japonica cul...    32  2.6
dbj|BAC30054.1| unnamed protein product [Mus musculus]                 30  5.9

>ref|XP_172581.3| similar to hypothetical protein [Homo sapiens]
          Length = 383

 Score = 32.3 bits (72), Expect = 1.5
 Identities = 27/101 (26%), Positives = 40/101 (38%), Gaps = 4/101 (3%)
 Frame = -2

Query: 318 SSCPRCERPSLRLGWERATTQWSKHAGAKFSDVSLSRAKAARSVLQQTRRQAVRLRFILL 139
           SSCP C++P L +   R  T+     G +     L R K A   L  +   A RL ++ +
Sbjct: 37  SSCPVCQQPGLAVS-AREATEKPGDGGTQVCCQGLRRLKNAEDRLMGS---AGRLHYLAM 92

Query: 138 RTSSGLHGRALTAP----QMCPCRYIHTGRTVLPQCGSNVC 28
              +   G    AP    ++C C       T L +C    C
Sbjct: 93  TAENPTPGDLAPAPLITCKLCLCEQSLDKMTTLQECQCIFC 133

>emb|CAD38622.1| hypothetical protein [Homo sapiens]
          Length = 350

 Score = 32.3 bits (72), Expect = 1.5
 Identities = 27/101 (26%), Positives = 40/101 (38%), Gaps = 4/101 (3%)
 Frame = -2

Query: 318 SSCPRCERPSLRLGWERATTQWSKHAGAKFSDVSLSRAKAARSVLQQTRRQAVRLRFILL 139
           SSCP C++P L +   R  T+     G +     L R K A   L  +   A RL ++ +
Sbjct: 4   SSCPVCQQPGLAVS-AREATEKPGDGGTQVCCQGLRRLKNAEDRLMGS---AGRLHYLAM 59

Query: 138 RTSSGLHGRALTAP----QMCPCRYIHTGRTVLPQCGSNVC 28
              +   G    AP    ++C C       T L +C    C
Sbjct: 60  TAENPTPGDLAPAPLITCKLCLCEQSLDKMTTLQECQCIFC 100

>emb|CAC36272.1| bA528A10.3.2 (novel protein similar to KIAA0161, isoform 2) [Homo
           sapiens]
          Length = 113

 Score = 32.3 bits (72), Expect = 1.5
 Identities = 27/101 (26%), Positives = 40/101 (38%), Gaps = 4/101 (3%)
 Frame = -2

Query: 318 SSCPRCERPSLRLGWERATTQWSKHAGAKFSDVSLSRAKAARSVLQQTRRQAVRLRFILL 139
           SSCP C++P L +   R  T+     G +     L R K A   L  +   A RL ++ +
Sbjct: 8   SSCPVCQQPGLAVS-AREATEKPGDGGTQVCCQGLRRLKNAEDRLMGS---AGRLHYLAM 63

Query: 138 RTSSGLHGRALTAP----QMCPCRYIHTGRTVLPQCGSNVC 28
              +   G    AP    ++C C       T L +C    C
Sbjct: 64  TAENPTPGDLAPAPLITCKLCLCEQSLDKMTTLQECQCIFC 104

>dbj|BAC92441.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
          Length = 259

 Score = 31.6 bits (70), Expect = 2.6
 Identities = 25/77 (32%), Positives = 33/77 (42%)
 Frame = +1

Query: 127 TRGS*KDESQPHRLSAGLLEHRPRSLSSRQRHVGELCSGVLAPLSCSALPT*SQRRSLTT 306
           TRG  +  + PH  +AG    RPR  S R+           A  SC   P   +RR L  
Sbjct: 63  TRGRGRLTAGPHMAAAGRARRRPRRHSRRE-----------AARSC---PDGRRRRPLAR 108

Query: 307 WAGARSQSGSSRCSLRS 357
            +GAR + G    + RS
Sbjct: 109 RSGARERGGKGETNRRS 125

>dbj|BAC30054.1| unnamed protein product [Mus musculus]
          Length = 716

 Score = 30.4 bits (67), Expect = 5.9
 Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 5/81 (6%)
 Frame = +1

Query: 145 DESQPHRLSAGLLEHRPRSLSSRQRH---VGELCSGVLAPLSCSALPT*SQRRSLT--TW 309
           +E+ P  LSAG       + ++R R     GE   G       +  P  S   + +  TW
Sbjct: 28  EEAAPASLSAGSATASSTARTARMRRPSSAGERARGPRPRQQPAPRPPSSPAAAASAYTW 87

Query: 310 AGARSQSGSSRCSLRSPTARR 372
           AGA + + ++R SL  PTA +
Sbjct: 88  AGAATATATARTSLTRPTAHQ 108



EST assemble image


clone accession position
1 LCL047a05_r AV628782 1 432
2 MXL014g03_r BP093852 17 433




Chlamydomonas reinhardtii
Kazusa DNA Research Institute